Field / plotLeafClassificationStress / disease detectionDisease symptoms / severity
Plant diseases threaten agricultural productivity, and automated image analysis can support early identification of visible disease symptoms. This study introduces HybOptic-CNN, a convolutional neural network (CNN) whose learning rate and batch size are selected using a hybrid Whale Optimization Algorithm--Grey Wolf Optimizer (WOA-GWO). Nine disease classes were selected from the 22-class CCMT field-image dataset, and 152 local farm leaf images were collected in Enugu State, Nigeria. Of the local images, 122 (80.3%) were added to the model-development data for training and validation, whereas 30 (19.7%) formed an independent Nigerian hold-out set excluded from augmentation, class balancing, early stopping, validation, and hyperparameter selection. Across 10 model-development runs, the optimized model achieved 96.8 ± 0.4% mean validation accuracy, 95.2 ± 0.5% macro-precision, 94.9 ± 0.6% macro-recall, and 95.0 ± 0.5% macro-F1, compared with 90.3 ± 0.9% validation accuracy and 86.3 ± 1.2% macro-F1 for the baseline. The optimized model improved mean validation accuracy by 6.5 percentage points and converged 14.6 epochs earlier. On the independent 30-image Nigerian hold-out, HybOptic-CNN achieved 93.3% accuracy and 93.1% macro-F1 across four represented disease classes. A web application integrating the trained classifier was also demonstrated. These results support improved model-development performance through hybrid hyperparameter selection and motivate broader multi-location field evaluation.
Why it matches plant phenotyping methods植物の可視病徴を画像から分類するCNN手法を開発・検証しており、病害状態のフェノタイピング手法が中心である。
abstractautomated image analysis can support early identification of visible disease symptoms
Reproduction assets foundThe paper's Data availability statement points to two public sources: a Mendeley dataset (the locally collected Nigerian field images) and the Kaggle CCMT plant disease dataset used as the principal image source. Only the Kaggle URL matches an allowed URL; the Mendeley URL is not in the allowed list, so only the CCMT/KDataset · publicnt and independent field-test data and should pub-
lish the class-wise split manifest, random seeds, WOA-GWO
numerical settings, and evaluation code so that the reported pro-
cedure can be reproduced and extended.
Data availability
The data used in this study are available at https://
data.mendeley.com/datasets/bwh3zbpkpv/1 and https://www.kaggle.com/datasets/rahimanshu/ccmt-plant-disease-dataset.Declaration of competing interest
The authors declare that they have no known competing fi-
nancial interests or personal relationships that could have ap-
peared to influence the work reported in this manuscript.
Funding
The authors received no specific funding from any public,
commercial, or not-fOpen asset ↗Kaggle · rahimanshu/ccmt-plant-disease-datasetpdf-raw-page:12 lines:1-78Code / dataset availability confirmedEurope PMC · checked 15 Sept 2026
Abstract Tomato leaf diseases (TLDs) such as Early Blight (EB), Late Blight (LB), and Leaf Mold (LM) have a negative impact on crop yield and quality, result-ing in economic losses in agriculture. Traditional diagnosis methods depend on the visual recognition of a disease, which are time-consuming, subjective and may be difficult to reach in rural settings. Keeping these drawbacks in mind, the present work introduces a Transfer Learning model for tomato leaf disease classification based on EfficientNetB3 network. A pretrained Ef-ficientNetB3 network, trained on ImageNet, is used to obtain discriminative features like lesion boundaries, discoloration, fungal textures, and infection spots. Images are cropped to 224 × 224 pixels and split into training, validation and test set. The proposed architecture employs Global Average Pooling, a dense layer with ReLU activation, drop out regularization and Softmax classifier for classification of tomato leaf images into four classes: Early Blight, Late Blight, Leaf Mold and Healthy. Experimental results show the high classification accuracy and low training, validation and test-ing losses. Inter-class misclassifications of the confusion matrix show very few, which supports good generalization. Moreover, Grad-CAM visualiza-tions can generate interpretable heat maps that point to the regions of the image affected by the disease, and multi-class ROC analysis gives high AUC values, which means that it has excellent class separability. The proposed framework provides a precise, reliable, and interpretable approach for auto-mated tomato leaf disease diagnosis, contributing to precision agriculture by assisting in early detection and prompt management of tomato diseases.
Why it matches plant phenotyping methodsトマト葉画像から病害状態を推定する深層学習手法が研究の中心であり、Grad-CAMによる病変領域の解釈と性能評価も行っているため、植物表現型計測手法として採択。
abstractthe present work introduces a Transfer Learning model for tomato leaf disease classification based on EfficientNetB3 network
Reproduction assets foundThe paper's tomato leaf disease classification uses a publicly available Kaggle dataset (PlantVillage-derived tomato leaf images, 4000 images across 4 classes), explicitly declared in the Data Availability statement with a public URL. No author code, trained models, or other paper-specific assets are disclosed.Dataset · publicitted in accordance with the Journal policies.
Permission to use third-party material
Images or figures are never published previously and did not take from any
internet resources.
Data Availability
The dataset used in this study is publicly available from the PlantVillage
tomato leaf disease dataset on Kaggle’s following link:
https://www.kaggle.com/datasets/kaustubhb999/tomatoleaf
Acknowledgements
The authors would like to thank SR University, Warangal, Telangana,
INDIA and Sharda University, Greater Noida, Uttar Pradesh, INDIA for
providing research facilities and computational resources to carry out this
work.Open asset ↗Kaggle · kaustubhb999/tomatoleafpdf-raw-page:20 lines:1-18Plant phenotyping relevance match · UnverifiedCrossref · checked 15 Sept 2026
Published7 Sept 2026Machine Learning and Knowledge Extraction
Plant diseases, being a subject of interdisciplinary research, significantly reduce crop yield, quality, and economic returns, while the misidentification of pathogens often leads to ineffective treatments and may harm beneficial organisms and ecosystems. This work develops an approach for robust visual classification of plant diseases under limited and heterogeneous data based on multi-scale fractal texture descriptors integrated into a convolutional neural network. The proposed method employs wavelet transform modulus maxima to extract two complementary fractal characteristics, local fractal dimension and singularity spectrum width, from leaf images at several spatial scales. These descriptors form multi-channel fractal maps fed into a fractal attention module (FAM) inserted after the third stage of a ResNet-50 architecture. The FAM learns to emphasize spatial regions where fractal properties are most discriminative, while a parallel branch encodes global fractal statistics into an auxiliary vector combined with backbone features at the final classification layer. Experiments are conducted on a large heterogeneous collection of 11 public plant disease datasets under 5-shot, 50-shot, and full-scale training regimes. The fractal-augmented model raises classification accuracy from 57.06% to 67.73% on 5 shots and from 80.81% to 86.11% on 50 shots, red outperforming the plain ResNet-50 in these settings, converges within 1–2 epochs versus 25–40, and shows markedly better resilience to color distortions, random occlusions, and grayscale conversion in most cases. The generated attention maps provide spatially explicit explanations of the model’s decisions, increasing transparency for practical use. The proposed approach demonstrates that fractal analysis, embedded as a modulating signal inside a deep network, can serve as an efficient and interpretable inductive bias, which is particularly valuable under data scarcity and noisy agricultural imagery.
Why it matches plant phenotyping methods植物葉画像から病害状態を推定するフラクタル特徴抽出とCNN手法の開発・評価が中心であり、植物病害フェノタイピング手法に該当する。
abstractThis work develops an approach for robust visual classification of plant diseases under limited and heterogeneous data based on multi-scale fractal texture descriptors integrated into a convolutional neural network.
Abstract Maize plant plays crucial role not only in the field of agriculture but also in global economy, since it is the third most cultivated crop across the globe. However, these plants are usually affected by various types of diseases such as blight, common rust, gray leaf spot, etc., protecting the plants from these disease is very important. This research proposes a new deep learning model for disease detection to perform well than other models. The hybrid model uses MobileNetV3 as the backbone architecture integrated with attention, fusion and head. The framework includes data preprocessing, feature extraction, classification and interpretation. We will compare the performance of this model with other models such as VGG16, ResNet50, DenseNet121, ALEXNET, etc. criteria for the final evaluation includes Accuracy, Precision, Recall, F1score, Specificity, Logloss, AUC-ROC curve. Through this proposed model we have achieved an accuracy of 98% which is high than the other models compared. The lightweight nature of MobileNetV3 enables us to implement the model in the mobile and IoT devices also. The present study contributes to the development of deep learning model in the field of agriculture, offering a efficient solution for early maize leaf disease detection.
Why it matches plant phenotyping methodsトウモロコシ葉の病徴を画像から検出・分類する深層学習手法の開発と比較が中心であり、植物病害状態の画像ベース表現型計測に該当する。
abstractThis research proposes a new deep learning model for disease detection to perform well than other models.
Reproduction assets foundThe paper's maize leaf disease detection model (MAFH) was trained and evaluated entirely on a public Kaggle image dataset, which the authors explicitly declare in the Data Availability statement. No author code, trained model checkpoints, or other paper-specific assets are stated as publicly available.Dataset · publicig and real-
time datasets and in all the environmental situations.
Funding: This research received no external funding.
Disclosure statement: The authors declare no conflict of interest.
Data Availability
The datasets generated and/or analyzed during the current study are available in the CORN OR
MAIZE LEAF DATASET repository,
https://www.kaggle.com/datasets/smaranjitghose/corn-or-maize-leaf-disease-datasetOpen asset ↗Kaggle · corn-or-maize-leaf-disease-datasetpdf-raw-page:27 lines:1-34Plant phenotyping relevance match · UnverifiedCrossref · checked 15 Sept 2026
Rice leaf diseases significantly reduce agricultural yield and pose a major challenge for sustainable food production, particularly owing to the limitations associated with manual and visual inspection methods that are subjective and often ineffective in early-stage detection. This investigation proposes a new Hybrid ResConvolutional Neural Network (HyResCN-Net) for effective classification and severity identification of rice plant leaf diseases. The proposed framework integrates an Internet of Things (IoT) -based data acquisition and routing simulation using CrowWhale Energy Trust Routing (CrowWhale-ETR) for efficient data handling. Initially, preprocessing is done by an averaging filter to reduce noise. Then, plant leaves are segmented using the Eff-UNet++ method. Augmentation techniques like rotation, scaling, and color change are applied to expand the dataset. Features, like entropy with Gradient Directional Pattern (GDP), Complete Local Binary Pattern (CLBP), and histogram features, are extracted to enhance feature representation. These features are then used within the proposed HyResCN-Net model, which integrates Parallel Convolutional Neural Network (PCNN) and ResNeXt to improve discriminative learning for disease classification and severity estimation. Experimental evaluation is conducted on the Rice Leaf Bacterial and Fungal Disease Dataset. Considering a k-value of 8, the HyResCN-Net gains an accuracy of 94.258%, a True Positive Rate (TPR) of 96.479%, a True Negative Rate (TNR) of 92.898%, a precision of 91.312% and an F1-score of 93.824% compared to existing methods. The HyResCN-Net efficiently enhances rice leaf disease identification and severity analysis, supporting its applicability in precision agriculture applications.
Why it matches plant phenotyping methodsイネ葉の病害分類と重症度という植物の状態を、画像取得・分割・特徴抽出・深層学習により推定する手法を開発・評価しており、フェノタイピング手法が中心である。
abstractThis investigation proposes a new Hybrid ResConvolutional Neural Network (HyResCN-Net) for effective classification and severity identification of rice plant leaf diseases.
Abstract Deep learning models have achieved near-perfect accuracy in plant disease classification within controlled laboratory settings; however, their deployment in real-world agricultural environments is severely hindered by the “deployment gap”—a critical vulnerability to environmental corruptions such as sensor noise, motion blur, and occlusion. To bridge this gap, we propose the Recurrent Active Vision Agent (RAVA), formulating the disease detection task as a Partially Observable Markov Decision Process (POMDP). Unlike passive Convolutional Neural Networks (CNNs) that process images globally, RAVA mimics the active inspection behavior of human agronomists. Our architecture integrates a lightweight ResNet-18 backbone with a Recurrent Neural Network (RNN) and a Spatial Transformer Network (STN). Driven by Proximal Policy Optimization (PPO), the agent learns a sequential policy to intelligently navigate and zoom in on informative “glimpses,” effectively bypassing background clutter. To stabilize the reinforcement learning process and enforce noise-invariant feature representations, we introduce a hybrid objective incorporating Supervised Contrastive Learning (SupCon). Comprehensive experiments on a combined PlantVillage and PlantDoc dataset demonstrate RAVA’s overwhelming superiority under extreme conditions. In a “Severe Degradation” stress test, standard ResNet-50 accuracy collapses to 26.3%, whereas our active agent maintains a robust 77.0%. Under extreme noise and occlusion, RAVA preserves 54.6% accuracy compared to the baseline’s 17.2%. Notably, this resilience is achieved with merely ∼12M parameters—significantly fewer than large-scale Vision Transformers—proving that active visual attention, coupled with contrastive learning, offers a computationally efficient and highly robust pathway for field-ready precision agriculture.
Why it matches plant phenotyping methods植物病害状態を画像から診断するための能動視覚手法を開発し、環境ノイズ下で性能検証している。植物病害の画像ベース表現型推定が中心である。
abstractwe propose the Recurrent Active Vision Agent (RAVA), formulating the disease detection task as a Partially Observable Markov Decision Process (POMDP).
Abstract Plant diseases substantially reduce global crop yields, and cotton production is particularly vulnerable to field-acquired variability in symptom appearance, background clutter, and illumination changes that limit the reliability and scalability of expert visual inspection. This study aimed to develop an accurate, computationally efficient, and explainable framework for real-time cotton leaf disease recognition that is suitable for deployment on resource-constrained edge devices. Using the SAR-CLD-2024 dataset (322 RGB images captured under natural agricultural conditions across seven categories, including healthy and diseased leaves), images were preprocessed via resizing and normalization and augmented online in the training set (random rotations, flips, brightness/contrast adjustments, and random cropping). An EfficientNet-B3 backbone initialized with ImageNet-pretrained weights was fine-tuned using categorical cross-entropy loss and Adam optimization, with early stopping, checkpointing, regularization, and a fixed-seed 70/15/15 train–validation–test partition to enhance reproducibility and reduce leakage. Performance was evaluated on an independent test set using accuracy, precision, recall, F1-score, MCC, balanced accuracy, Cohen’s kappa, confusion matrix, multi-class ROC/AUC, and precision–recall analysis, alongside computational benchmarking (parameters, FLOPs, memory, and inference latency) and comparative experiments against contemporary CNN, lightweight, and transformer-based models. The model showed stable convergence over 30 epochs with a small training–validation gap, predominantly correct predictions with limited confusion among visually similar classes, consistently high precision–recall behavior under moderate class imbalance, and stable performance across repeated runs with low variability and a tight confidence interval. Grad-CAM heatmaps localized necrotic lesions, discoloration, and infected tissues while largely ignoring background, and failure cases were associated with early-stage symptoms, occlusion, shadows, and inter-class similarity. Overall, the framework provides a reproducible, interpretable, and efficient solution for cotton leaf disease classification with practical implications for trustworthy, low-latency, on-device decision support in precision agriculture.
Why it matches plant phenotyping methods綿葉の病徴を画像から分類する深層学習手法の開発が中心で、独立テスト、比較評価、計算性能評価、Grad-CAMによる病徴局在化を実施しているため、植物病害フェノタイピング手法に該当する。
abstractThis study aimed to develop an accurate, computationally efficient, and explainable framework for real-time cotton leaf disease recognition
Reproduction assets foundThe paper's Data Availability statement explicitly names the SAR-CLD-2024 cotton leaf dataset used for all experiments as publicly available on Kaggle with a direct URL. No author analysis code or trained model checkpoint is deposited.Dataset · publicntribute to the development of fully automated, scalable, and real-time smart agriculture
systems.
Declaration
Funding
Datta Meghe Institute of Higher Education and Research Wardha, Maharashtra, India
Data Availability: The SAR-CLD-2024 cotton leaf dataset used in this study is publicly
available through the Kaggle platform at: https://www.kaggle.com/datasets/pantho12/sar-cld-2024-dataset-for-cotton
This dataset includes annotated images of various cotton leaf diseases collected under diverse
environmental conditions. All data utilized in this work are freely accessible, and the data
processing methodology has been described in detail to facilitate reproducibility.
Conflict of interest The aOpen asset ↗Kaggle · SAR-CLD-2024pdf-raw-page:32 lines:1-38Plant phenotyping relevance match · UnverifiedEurope PMC · Crossref · checked 15 Sept 2026
Plant diseases pose a serious threat to agriculture, causing yield losses of 20 to 40 percent each year, resulting in more than 220,000 million dollars in economic damage and significantly affecting the global food supply. Traditional plant health monitoring practices involve visual inspection of plant tissue and can only detect the presence of disease once visual symptoms are already evident. This article presents AgriIDIA, an early-detection plant disease recognition system trained on datasets of 24-channel multispectral images derived from six optical filters (BlueIR, Hotmirror, K590, K665, K720, and K850) and six vegetation indices (NDVI, GNDVI, NDRE, EVI, REI, and SAVI). First, an exploratory data analysis is conducted on the diagnostic capability of the described 24-channel data representation, using 1,266 image stacks labeled with six classes (diseased/healthy papaya, diseased/healthy potato, diseased/healthy tomato). Next, using the results of the exploratory data analysis, the manuscript describes the training and cross-validation performance of AgriIDIA, with a macro-F1 score of 83.91 ± 3.42% and an accuracy of 84.00 ± 3.17% on the validation set. Finally, the performance of the trained model is evaluated on the reserved test set (N=190), demonstrating an accuracy of 81.05%, a macro-F1 score of 0.7398, and a weighted ROC-AUC of 0.9383. The results of this study suggest that the 24-channel multispectral representation has significant diagnostic potential for the early detection of plant diseases and can be used to design accessible phytosanitary methods for small-scale farmers.
Why it matches plant phenotyping methods多チャネルマルチスペクトル画像から植物病害状態を推定する認識システムの開発・検証が研究の中心であり、植物表現型として病害状態を直接評価している。
abstractThis article presents AgriIDIA, an early-detection plant disease recognition system trained on datasets of 24-channel multispectral images
Field / plotLeafClassificationDisease symptoms / severity
Early and accurate detection of plant diseases is critical in precision agriculture to improve crop management and yield. Mungbean ( Vigna radiata L.) is highly susceptible to several foliar diseases, including yellow mosaic, powdery mildew, leaf crinkle, and cercospora leaf spot, which cause substantial productivity losses. Despite expanding applications of deep learning in plant disease diagnosis, systematic multi-architecture evaluation for mungbean disease classification under natural field conditions remains limited. This study addresses this gap by evaluating five state-of-the-art deep convolutional neural network (DCNN) architectures on a large-scale, field-acquired mungbean dataset that captures real-world variability across environmental conditions and disease severity levels, distinguishing it from controlled laboratory studies. A total of 5,617 original images across five classes were used. Data augmentation was applied exclusively to the training subset after stratified splitting to prevent data leakage. The dataset was partitioned into training (70%), validation (15%), and testing (15%) subsets. VGG16, VGG19, ResNet50V2, DenseNet121, and InceptionV3 were evaluated using identical transfer learning and fine-tuning protocols. Model performance was assessed using AUC-ROC, Cohen's kappa coefficient, McNemar's test for pairwise statistical comparisons, five-fold cross-validation, and Grad-CAM-based interpretability. On the independent test set, InceptionV3 achieved the highest accuracy (98.47%) and macro-F1 (98.49%), followed by VGG16 (98.36%) and VGG19 (97.89%). AUC-ROC values exceeded 0.997 for all models, confirming excellent class discrimination. Grad-CAM visualizations further confirmed that model predictions were based on biologically relevant disease symptoms. The findings demonstrate the effectiveness of deep learning for robust disease recognition under realistic field conditions and highlight the potential of AI-based diagnostic tools for crop health monitoring, precision agriculture, and decision-support systems in mungbean production.
Why it matches plant phenotyping methods圃場画像からマングビーン葉の病徴・病害状態を推定する深層学習手法を複数モデルで評価・検証しており、植物病害フェノタイピング手法が中心です。
abstractsystematic multi-architecture evaluation for mungbean disease classification under natural field conditions remains limited
Abstract Maize is the staple crop for millions of people in Sub-Saharan Africa, particularly for Zambia. Unfortunately, maize crops are exposed to several serious threats due to their susceptibility to foliar diseases like Maize Rust, Leaf Blight, Leaf Spot, Maize Streak Virus, and Maize Lethal Necrosis that may lead to great yield losses. Conventional methods of crop disease identification consist of field surveys that are not only subjective but also difficult to conduct for smallholder farmers. This paper presents the design and evaluation of a highly optimized version of the EfficientNet-B0 Convolutional Neural Network for the automatic detection of maize leaf diseases using maize leaf images obtained from real-world scenarios. The proposed model utilized the concept of transfer learning with ImageNet pre-trained weights and was trained on the Mendeley Maize Crop Disease (Leaf) Dataset which consists of 30,120 images in nine maize disease classes. The developed fine-tuned EfficientNet-B0 yielded 97.57% classification accuracy, macro precision of 97.61%, macro recall of 97.64%, and macro F1-score of 97.61%. From these results, it is evident that transfer learning and fine-tuning greatly boost maize disease classification accuracy while ensuring high computational efficiency. This study makes a significant contribution to precision agriculture as it offers an accurate and computationally efficient AI-based maize disease classification model, which could help smallholder farmers in early maize disease classification.
Why it matches plant phenotyping methodsトウモロコシ葉画像から病害状態を推定する深層学習モデルを開発・評価しており、植物病害表現型の取得・分類手法が中心的な研究です。
abstractThis paper presents the design and evaluation of a highly optimized version of the EfficientNet-B0 Convolutional Neural Network for the automatic detection of maize leaf diseases using maize leaf images obtained from real-world scenarios.
Reproduction assets foundThe paper's sole qualifying asset is the public Mendeley Maize Crop Disease (Leaf) Dataset of maize leaf images used for all phenotyping/classification measurements, explicitly declared publicly available with a URL. No author analysis code, trained model checkpoints, or other paper-specific assets are disclosed.Dataset · publiconflicts of interest to publish the paper.
Consent to Publish
All authors have read and approved the final version of the manuscript and agree to its
submission to Discover Networks.
Consent to Participate
Not applicable
Data Availability
The Mendeley Maize Crop Disease (Leaf) Dataset used in this study is publicly available at
https://data.mendeley.com/datasets/6w6gsvghfw
Clinical Trial Number
Not applicable.
Ethics Declaration:
Not applicable.
Competing interests
All authors declare no competing interests.Open asset ↗Mendeley · 6w6gsvghfwpdf-raw-page:55 lines:1-22Plant phenotyping relevance match · UnverifiedCrossref · checked 15 Sept 2026
Brown Rot (Monilinia spp.) and Leaf Curl (Taphrina deformans) are principal fungal diseases affecting peach (Prunus persica L. Batsch) production, lacking validated AI-based diagnostic tools in tropical highland orchards. This study presents a compact Convolutional Neural Network (3658 trainable parameters), applied identically to fruit and leaf classification, integrated with a background-removal preprocessing pipeline and evaluated through stratified 5-fold cross-validation on 800 in-situ images from four orchards in Cómbita and Choachí, Colombia. The proposed architecture achieved mean accuracies of 82.8% (fruit) and 95.3% (leaf), with AUC values of 0.87 and 0.98, and a trained model footprint of approximately 100 KB, supporting storage- and bandwidth-efficient deployment. Benchmarked against ImageNet-pretrained MobileNetV3-Small and MobileNetV2 under an identical protocol, the proposed architecture matched or exceeded MobileNetV3-Small on leaf classification despite a 257-fold smaller parameter count, and achieved comparable or lower inference latency than both larger backbones. To our knowledge, this is the first validated system for simultaneous detection of both pathogens in Prunus persica under real field conditions, combining a compact, deployment-ready architecture with an ablation-verified preprocessing pipeline. The proposed model was deployed in the DurAPP web platform, giving peach growers in tropical highland regions a practical, low-footprint diagnostic tool suited to smallholder farming conditions.
Why it matches plant phenotyping methodsモモ果実・葉の病徴を画像から分類するCNN、前処理、交差検証、他モデル比較、実地検証、プラットフォーム展開が中心であり、植物病害状態の画像ベースフェノタイピング手法に該当する。
abstractThis study presents a compact Convolutional Neural Network (3658 trainable parameters), applied identically to fruit and leaf classification, integrated with a background-removal preprocessing pipeline and evaluated through stratified 5-fold cross-validation on 800 in-situ images from four orchards
Agriculture is being revolutionized through the integration of cutting-edge technologies that support efficiency, productivity, and sustainability. Recent trends in transforming traditional agriculture into smart agricultural systems through the application of Artificial Intelligence (AI), IoT, and drone technology are gaining popularity worldwide. In this context, the current study developed an integrated artificial intelligence-based farming system incorporating Internet of Things sensors, drones, deep learning, and web/mobile applications for timely monitoring of crop and aquatic health. Data were collected using IoT sensors and drones equipped with high-resolution cameras to monitor soil and water parameters, including temperature, humidity, and pH, under various climatic conditions. A dataset of 70,000 images was used for system training, validation, and testing with an 80:10:10 split, together with three months of IoT sensor data. Models including YOLOv8, CNN, Faster R-CNN, ResNet50, MobileNet, EfficientNet, DenseNet, LSTM, and Random Forest were used for pest and disease detection, fish classification, fish disease detection, shrimp disease detection, and monitoring of climatic factors. Data pre-processing included denoising, normalization, missing-value handling, and feature extraction. The designed model showed reliable performance across the tasks, with 88.4% accuracy for shrimp detection, 92.1% for pest detection using YOLOv8, and 93.4% accuracy for plant disease detection using the CNN model. Overall performance was recorded at 97% accuracy, with high precision, F1-score, and mAP, and an RMSE of 1.2 for sensor-based prediction and validation. The current findings indicate the potential of using AI, IoT, and drone technologies to detect biotic and abiotic stresses during farming and support a sustainable agricultural system.
Why it matches plant phenotyping methodsAI・IoT・ドローンを統合した作物健康モニタリングシステムを開発し、植物病害検出モデルを訓練・検証しており、植物状態の取得方法が中心的である。
abstractthe current study developed an integrated artificial intelligence-based farming system incorporating Internet of Things sensors, drones, deep learning, and web/mobile applications for timely monitoring of crop and aquatic health
Abstract Agricultural pest and disease monitoring plays a vital role in ensuring crop productivity, reducing pesticide consumption, and promoting sustainable agricultural development. Although deep learning techniques have achieved remarkable success in plant health diagnosis, many existing models remain computationally intensive and are difficult to deploy on resource-constrained edge devices used in practical agricultural environments. To address these challenges, this study proposes a practical lightweight deep learning framework based on an improved ShuffleNetV2 architecture for real-time maize pest and disease recognition under complex field conditions.The proposed model incorporates the Ghost module to reduce redundant feature generation, the Efficient Channel Attention (ECA) mechanism to enhance feature representation, and the HardSwish activation function to improve nonlinear learning capability while maintaining computational efficiency. Extensive experiments were conducted on a maize pest and disease dataset containing multiple disease and pest categories collected under natural field conditions. Experimental results demonstrate that the proposed model achieves superior recognition accuracy while significantly reducing model parameters and computational complexity compared with several mainstream lightweight convolutional neural networks.The results show that the proposed method achieves an accuracy of 93.00%, a recall of 92.76%, and an F1-score of 92.42%, while maintaining extremely low computational cost (0.03 GFLOPs) and model size (1.16 MB). Furthermore, the proposed model was successfully deployed on a Raspberry Pi platform, demonstrating excellent real-time inference capability and low computational resource consumption. The framework is suitable for practical agricultural applications, including intelligent crop monitoring, UAV-assisted field inspection, and mobile diagnostic systems. By enabling rapid and accurate in-field identification of maize pests and diseases, the proposed approach supports timely crop protection decisions, reduces unnecessary pesticide application, and contributes to sustainable agriculture through practical edge-AI deployment.
Why it matches plant phenotyping methodsトウモロコシの病害状態を画像から認識する軽量深層学習法の開発・評価が中心であり、植物病害フェノタイプの取得手法に該当する。
abstractthis study proposes a practical lightweight deep learning framework based on an improved ShuffleNetV2 architecture for real-time maize pest and disease recognition under complex field conditions.
Hyperspectral sensors have emerged as a promising approach in the study of plant diseases. The objective was to distinguish between healthy and inoculated seeds, and also to distinguish between genera of plant-pathogenic fungi in soybean seeds, using hyperspectral sensors combined with machine learning. The experimental design was a fully randomized factorial design with six algorithms (Simple Logistic Regression, Support Vector Machine, Artificial Neural Network, Random Forest, REPTree and J48 decision trees) and four phytopathogens (Sclerotinia sclerotiorum, Macrophomina phaseolina, Rhizoctonia solani, and Colletotrichum sp.) plus the control. Spectral analysis of the seeds was performed using a spectroradiometer (Ocean Optics) consisting of two sensors: NIR and Flame, covering the spectrum from 350 to 2500 nm. It was possible to distinguish between healthy and inoculated seeds, as well as identify the type of phytopathogen, based on each spectral signature. The Simple Logistic Regression and Support Vector Machine algorithms performed best. Hyperspectral sensors combined with machine learning constitute a promising tool for the detection of phytopathogens in seeds, enabling rapid and non-destructive analysis. This promising tool could serve as a complementary alternative to traditional diagnostic methods, which, although accurate, are time-consuming and rely on specialized labor.
Why it matches plant phenotyping methods種子の健全・感染状態を非破壊的に推定するハイパースペクトルセンシングと機械学習が研究の中心であり、感染植物器官の状態を直接測定する方法として扱える。
abstractThe objective was to distinguish between healthy and inoculated seeds, and also to distinguish between genera of plant-pathogenic fungi in soybean seeds, using hyperspectral sensors combined with machine learning.
Accurate plant disease detection remains challenging when using single-modality data, which fails to capture comprehensive disease-related features. However, many existing studies rely on pixel-level classification or prior plant segmentation and lack explicit modeling of cross-modal interactions, limiting their ability to distinguish between healthy and diseased plants. This study presents a spatial–spectral fusion deep learning framework (S2-PDD) that fuses uncrewed aerial vehicles (UAV)-based RGB imagery and hyperspectral-derived feature representations for plant-level detection of potato diseases (blackleg and Potato virus Y (PVY)), employing early fusion (modalities combined at the input stage) and middle fusion (features integrated at intermediate stages within the model backbone) strategies. The multimodal fusion models were compared against single-modal models and an existing S2ADet model. Model performance, assessed through five-fold cross-validation, demonstrated that multimodal models integrating RGB and vegetation index features achieved the highest mAPs of 86.65 ± 1.71 (%; E-RV model) and 85.74 ± 1.96 (M-RV), respectively. These mAPs were higher than those of all single-modal models, including the RGB-only (83.21 ± 1.46) and hyperspectral-only models (PCA features: 79.71 ± 1.45; vegetation index features: 85.31 ± 2.36). They also exceeded mAPs of multimodal models combining RGB with PCA features (early fusion: 83.00 ± 2.81; middle fusion: 83.11 ± 2.46; S2ADet: 84.04 ± 2.73), regardless of the fusion strategy. The superior performance highlights that vegetation index features provide strong class separability compared to other hyperspectral representations. The proposed models achieved strong plant-level detection performance, with AP of 78.65 ± 4.14 (E-RV) and 77.40 ± 3.46 (M-RV) for blackleg disease, as well as 84.82 ± 3.59 (E-RV) and 83.28 ± 3.86 (M-RV) for PVY. These results demonstrate the potential of UAV-based multimodal sensing for disease monitoring in cropping systems. A potato plant disease detection dataset was constructed and made publicly available, containing paired RGB and hyperspectral image tiles with bounding box annotations. The code is available at https://github.com/Tim-Agro/S2-PDD.
Why it matches plant phenotyping methodsUAV RGB・ハイパースペクトル画像からジャガイモ個体の病害状態を推定する融合モデルを開発・比較検証し、公開データセットも構築しており、病害表現型の取得・抽出手法が中心である。
abstractThis study presents a spatial–spectral fusion deep learning framework (S2-PDD) that fuses uncrewed aerial vehicles (UAV)-based RGB imagery and hyperspectral-derived feature representations for plant-level detection of potato diseases (blackleg and Potato virus Y (PVY))
Rice panicle blast detection is an important task in plant disease phenotyping. Field-based detection remains challenging because infected spike regions are often small, sparse, elongated, and affected by overlapping panicles, complex backgrounds, and variable illumination. In this study, we propose RPB-YOLO11, a lightweight YOLO11-based detector designed for rice panicle blast detection. The model uses a Lightweight Ghost Backbone (LGB) to reduce redundant computation. It uses Anisotropic Axial Stripe Attention (A2SA) to represent elongated panicle structures. It also uses Focal Multi-Scale Attention (FMSA) for multi-scale feature refinement and Adaptive Geometric Shape IoU (AGS-IoU) for geometry-aware localization. The model was trained and evaluated on a rice panicle image dataset containing 1,055 training images, 69 validation images, and 169 test images. On the test set, RPB-YOLO11 achieved 76.09% mAP50, 45.44% mAP50-95, 73.98% precision, and 72.75% recall with 6.21 GFLOPs. Compared with the YOLO11n baseline, it improved mAP50, mAP50-95, precision, and recall by 2.73, 2.12, 1.64, and 2.11 percentage points, respectively. An Android-oriented inference application supports local image inference, detection visualization, class counting, and diseased-panicle incidence estimation. These results suggest that RPB-YOLO11 provides a practical approach for image-based rice panicle blast survey.
Why it matches plant phenotyping methodsイネ穂いもちの画像検出モデルを開発・比較検証し、罹病穂率を推定する実用アプリまで構築しており、植物病害状態の画像ベース表現型取得が中心である。
abstractIn this study, we propose RPB-YOLO11, a lightweight YOLO11-based detector designed for rice panicle blast detection.
Reproduction assets foundThe paper links a public Hugging Face dataset used to establish the rice panicle blast detection dataset and a public GitHub release (data availability statement) containing the study's datasets/models.Dataset · publicsites, cultivars, growth stages, imaging conditions, and disease severities are still needed to evaluate generalization more fully.
Statements
Data availability statement
The datasets presented in this study can be found in online repositories. The names of the repository/repositories and accession number(s) can be found below: https://github.com/XuzheYang2Doc/RPB-YOLO11/releases/tag/rpb-yolo11 .
Author contributions
XY: Data curation, Formal analysis, Investigation, Methodology, Software, Validation, Visualization, Writing – original draft, Writing – review & editing. XZ: Conceptualization, Methodology, Visualization, Writing – original draft, Writing – review & editing. CX: Formal analysisOpen asset ↗XuzheYang2Doc/RPB-YOLO11 · rpb-yolo11lines:639-658Plant phenotyping relevance match · UnverifiedCrossref · checked 14 Sept 2026
Problem: Agriculture plays a pivotal role in the Indian economy, where crop production quality and quantity directly impact the livelihoods of millions. Climate variability, emerging plant diseases, and improper pesticide application contribute significantly to agricultural losses. Early and accurate disease detection is crucial for mitigating crop damage and ensuring food security. Methodology: This study presents a novel deep learning framework based on EfficientNet architecture, enhanced with Progressive Fine-Tuning Strategy for automated plant disease detection. The proposed methodology was evaluated on two benchmark datasets: the Plant Village dataset comprising 20,639 images of tomato, potato, and bell pepper with 15 disease varieties; and a drone-captured rice plant dataset containing 4432 samples from public repositories. The model’s performance was assessed using multiple metrics, including classification accuracy, precision, recall, and F1-score. To strengthen the validation of high accuracy results, additional statistical analyses like class imbalance ratio, Entropy, Chi-Square test, convergence curve, ANOVA test, Tukey’s post hoc HSD test, confidence interval, Cohen’s Kappa result, fold-wise dispersion analysis, mean, std deviation are included in the manuscript. Result: Experimental results demonstrate that the fine-tuned EfficientNetV2-B1 architecture achieved exceptional performance with 99.7% classification accuracy on the PlantVillage dataset and 99.03% accuracy on the drone-based rice disease dataset, significantly outperforming existing state-of-the-art transfer learning models. Model explainability techniques further validated the reliability and interpretability of the predictions, confirming the model’s focus on disease-relevant features.
Why it matches plant phenotyping methods植物画像から病害状態を推定する深層学習手法を開発し、複数データセットで性能検証しており、植物フェノタイピング手法が中心である。
abstractThis study presents a novel deep learning framework based on EfficientNet architecture, enhanced with Progressive Fine-Tuning Strategy for automated plant disease detection.
Automated plant disease classification from leaf images demands models that jointly achieve high accuracy and efficient training convergence. Standard deep learning approaches process images through a single feature pathway, limiting their ability to capture diverse visual manifestations such as color changes, texture patterns, and spatial distributions. This paper introduces DMCNNA-FBVL, a framework integrating two complementary innovations: (1) a Deep Multi-Component Neural Network Architecture (DMCNNA) employing three specialized pathways processing color-space statistics, texture descriptors, and raw image features before fusing them through SoftMax-weighted aggregation; and (2) Feedback-Based Validation Learning (FBVL), a training strategy that periodically blends validation-set gradients into weight updates to accelerate convergence. Experiments on the New Plant Diseases Dataset (87,000 images, 38 classes) show that DMCNNA-FBVL achieves 98.7% accuracy, 98.8% precision, 98.6% recall, and 98.7% F1-score, outperforming ResNet-50 by 3.2 percentage points ( 𝑝 < 0 . 0 0 1 ). The primary reported metrics are computed exclusively on an independent 10% hold-out test set, whereas the separate 10% validation partition is used during training for FBVL gradient blending and does not contribute to final test evaluation. Five-fold cross-validation confirms stability (98.7% ± 0.15%). Ablation experiments confirm additive gains, while FBVL reduces wall-clock training time by 15% through faster convergence.
Why it matches plant phenotyping methods葉画像から植物病害を分類するニューラルネットワークと学習戦略の開発・検証が研究の中心であり、植物の病害状態を直接推定している。
abstractAutomated plant disease classification from leaf images demands models that jointly achieve high accuracy and efficient training convergence.
Reproduction assets foundThe paper's plant disease classification experiments use the New Plant Diseases Dataset, which the authors state is publicly available on Kaggle. The authors' code and trained models are only promised 'upon acceptance' (no public URL), so they do not qualify as public assets.Dataset · publicral
monitoring systems.
Declaration of competing interest
The authors declare that they have no known competing financial interests or personal relationships that could have
appeared to influence the work reported in this paper.
Data availability
The New Plant Diseases Dataset used in this study is publicly available on Kaggle (https://www.kaggle.com/datasets/vipoooool/new-plant-diseases-dataset). Code and trained models will be made available upon
acceptance.
Funding
This research did not receive any specific grant from funding agencies in the public, commercial, or not-for-profit
sectors.
Acknowledgments
[Removed for double-blind review.]
CRediT authorship contribution statement
[Removed fOpen asset ↗Kaggle · new-plant-diseases-datasetpdf-raw-page:19 lines:1-59Plant phenotyping relevance match · UnverifiedEurope PMC · checked 14 Sept 2026
Abstract In Bangladesh, the potato (Solanum tuberosum L.) stands as an indispensable food and cash crop, deeply intertwined with national food security, rural livelihoods, and the broader agricultural economy. However, foliar diseases such as early blight and late blight frequently precipitate substantial yield losses and quality degradation when not identified and mitigated during the nascent stages of infection. Contemporary diagnostic paradigms remain predominantly manual and visual, relying heavily on agricultural professionals, which is often inefficient and inaccessible for remote farmers. While deep learning has demonstrated remarkable efficacy in automated plant disease recognition, existing methodologies frequently lack interpretability, disease severity quantification, and real-world field applicability. This paper introduces a comprehensive, interpretable deep learning-based framework utilizing EfficientNetV2-B0 for classifying potato leaf images into healthy, early blight, and late blight categories. By integrating Gradient-Weighted Class Activation Mapping (Grad-CAM), the model achieves high transparency, highlighting critical prediction regions. Furthermore, a severity assessment module estimates infection percentages, providing actionable treatment recommendations, ultimately enhancing agricultural decision-making.
Why it matches plant phenotyping methodsジャガイモ葉の画像から病害の種類と感染割合（重症度）を推定する深層学習手法が研究の中心であり、植物病害状態の表現型取得・定量化に該当する。
abstractThis paper introduces a comprehensive, interpretable deep learning-based framework utilizing EfficientNetV2-B0 for classifying potato leaf images into healthy, early blight, and late blight categories.
The automation and standardization of hyperspectral imaging, particularly at high spatial resolution, are essential for advancing plant phenomics and supporting diverse plant science research. We developed HyperBird, a hyperspectral microscopic imaging robot, to automate the acquisition of up to 351 leaf-disc samples in a single tray within approximately 2.4 h and thereby support scalable plant experiments. System calibration established a spatial resolution of 24.3 μ m (full width at half maximum; FWHM), a spectral resolution of 1.78 nm (FWHM), and a depth of field of 4.53 mm, producing hyperspectral data cubes of 2195 × 2000 × 950 pixels across the 400–1000 nm spectral range. System-level and biological-sample consistency assessments confirmed stable spectral measurements during extended scanning sessions and across independently prepared trays. Thermal evaluation confirmed that the 150 W illumination design introduced minimal sample heating during scanning. HyperBird was first evaluated using grape downy and powdery mildews, where no consistent measurable effect of repeated imaging on pathosystem development was detected under the tested experimental conditions. Subsequently, HyperBird was used to characterize spatiotemporal spectral progression in grapevine leaves inoculated with Plasmopara viticola . An automated regional spectral tracing pipeline was developed to isolate spectra from retrospectively traced regions and compare them with whole-leaf averaged spectra across 0–9 days post-inoculation (DPI). Categorical mixed-effects modeling showed that these spatially resolved regional spectra exhibited significant disease-associated spectral change by 5 DPI, with a sharp transition at 6 DPI, whereas whole-leaf spectra showed delayed and weaker disease-aligned changes beginning at 7 DPI. These results demonstrate that HyperBird enables high-throughput, spatially resolved hyperspectral imaging for quantifying localized plant disease progression and provides a scalable platform for studying spectral biology across plant phenotyping applications.
Why it matches plant phenotyping methodsHyperBirdの高スループット・ハイパースペクトル画像取得ロボットを開発し、校正、再現性、加熱影響、病害進展の定量性能を検証しており、植物フェノタイピング手法が中心である。
abstractWe developed HyperBird, a hyperspectral microscopic imaging robot, to automate the acquisition of up to 351 leaf-disc samples in a single tray within approximately 2.4 h and thereby support scalable plant experiments.
Reproduction assets foundThe paper's Data Availability statement points to a public GitHub repository containing the authors' code and processed data supporting the phenotyping analyses; raw hyperspectral image data are request-only.Code · publicData Availability
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The code and processed data supporting the findings of this study are available in the GitHub
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repository at https://github.com/jy773Cornell/HyperBird-Robot. Raw hyperspectral image
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data are available from the corresponding author upon reasonable request due to file size and storage
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constraints.
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Supplementary Materials
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Supplementary materials accompany this article as a separate document (supplementary.pdf).
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Supplementary Figure S1. Representative GSAM-based segOpen asset ↗HyperBird-Robotpdf-raw-page:39 lines:1-75Code / dataset availability confirmedEurope PMC · checked 14 Sept 2026
Southern corn leaf blight (SCLB) is caused by the fungal pathogen Bipolaris maydis (syn. Cochliobolus heterostrophus Drechsler) and is a common disease of fall crops of sweet corn. Phenotyping for SCLB resistance is performed through visual scoring, which is subjective and may limit genetic gain for this quantitative trait. As an alternative, we integrated computer vision (CV)-based phenotyping, genome-wide association studies (GWASs), and predictive breeding approaches to dissect the genetic basis of SCLB resistance. We utilized a sweet corn diversity panel with 693 genotypes, for which whole-genome resequencing produced a high-density single-nucleotide polymorphism (SNP) dataset. Broad-sense heritability for visual scoring ranged from 0.44 to 0.73, while CV-based phenotyping produced estimates ranging from 0.56 to 0.73 in multi-environment resistance trials conducted across 5 years and three locations. We performed GWAS using 16,755,210 SNPs and identified 41 associated SNPs. Genomic selection (GS) models on visual scoring phenotypes achieved moderate prediction accuracies under cross-validation of untested genotypes across characterized environments (0.22-0.47) and high prediction accuracies when predicting tested genotypes in uncharacterized environments (0.49-0.68). Using CV-based phenotypes for GS, we observed prediction accuracies of 0.45-0.47 under the untested genotypes in the characterized environments cross-validation scheme and 0.59-0.62 under the tested genotypes in the uncharacterized environments scheme. GS demonstrated reliability for ranking the individuals across a gradient of environments. These findings identify candidate loci and predictive breeding strategies to accelerate the development of resistant sweet corn cultivars.
Why it matches plant phenotyping methodsCVベースの病害抵抗性表現型測定を視覚評定と比較し、多環境・多年次試験で妥当性を評価しており、フェノタイピング手法が研究の中心である。
abstractPhenotyping for SCLB resistance is performed through visual scoring, which is subjective and may limit genetic gain for this quantitative trait.
Reproduction assets foundThe authors state that all datasets (phenotype data) and analysis code (CV phenotyping script, customized GAPIT script) are publicly available in their GitHub repository, which is listed in allowed_urls.Code · publiche images taken for each plot were saved in JPG format and analyzed using a CV method. Here, we refer to the CV method as a custom Python script written using the OpenCV library version 4.5.0, a set of tools for CV (Bradski, 2000 ). The Python script used for leaf CV image analysis is available in our public GitHub repository ( https://github.com/Resende‐Lab/SCLB‐Disease ).
FIGURE 1
Leaf imaging set up with QR‐coded plot IDs (bottom right) and color checker for computer vision phenotyping of southern corn leaf blight disease severity in sweet corn.
In the CT19 environment, a black cloth attached to a wooden board was used as the background. A wooden frame was used to clamp the leaves down toOpen asset ↗Resende‐Lab/SCLB‐Diseaselines:199-209Dataset · publicBLUP and BayesB model implemented in BGLR.
ACKNOWLEDGMENTS
This work was supported by the National Institute of Food and Agriculture USDA‐NIFA2018‐51181‐28419, USDA‐NIFA2019–05410, and USDA‐NIFA 2022–51181‐38333.
DATA AVAILABILITY STATEMENT
All the datasets and codes used in this study are available in the following repository: https://github.com/Resende‐Lab/SCLB‐Disease
REFERENCES
Amadeu , R. R.
,
Cellon , C.
,
Olmstead , J. W.
,
Garcia , A. A. F.
,
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, &
Muñoz , P. R.
( 2016 ).Open asset ↗Resende‐Lab/SCLB‐Diseaselines:566-596Plant phenotyping relevance match · UnverifiedEurope PMC · checked 14 Sept 2026
Whitefly-transmitted begomoviruses cause tomato leaf curl disease (ToLCD). In India, at least 15 begomoviruses are known to cause ToLCD, posing a major challenge to resistance breeding. Although several Ty resistance loci have been introgressed from wild tomato relatives, variable resistance responses are frequently observed, likely due to mixed infections and the absence of a standardized disease scoring system. Moreover, limited knowledge of the infecting begomoviruses in resistant genotypes has hindered the effective use of donor lines in breeding programs. This study evaluated 17 homozygous Ty-gene donor tomato genotypes under natural epiphytotic conditions and identified the associated begomoviruses. To quantify disease severity, a robust disease scoring system was developed using coefficient of infection (CI) by integrating symptom parameters- leaf curling, leaf smalling, stunting, and fruiting, with population-level disease incidence. Field evaluations for two years revealed that genotypes carrying both Ty-2 and Ty-3 loci showed higher resistance, though variability existed among them. Genotypes with Ty-3 alone or Ty-5 + Ty-6 combinations also displayed substantial tolerance, and five genotypes were identified as highly resistant. Molecular indexing revealed frequent mixed infections and identified multiple begomoviruses, including a newly characterized species, tomato leaf curl Ty Pusa virus, alongside tomato leaf curl New Delhi virus, tomato leaf curl Palampur virus, tomato leaf curl Gujarat virus, and tomato leaf curl Joydebpur virus. These findings highlight a shift in begomovirus predominance and possible recombination-driven emergence of new variants. This study provides an integrated framework for evaluating ToLCD resistance and emphasizes the need for continuous reassessment of resistance sources to ensure durable tomato cultivar development.
Why it matches plant phenotyping methods植物の病徴と発病率を統合した病害重症度スコアリング法を開発し、抵抗性評価に適用しており、表現型取得法が研究の中心である。
abstractTo quantify disease severity, a robust disease scoring system was developed using coefficient of infection (CI) by integrating symptom parameters- leaf curling, leaf smalling, stunting, and fruiting, with population-level disease incidence.
To overcome YOLOv11’s limitations in complex field environments, this paper proposed SDD-YOLOv11n, a lightweight real-time detector for soybean diseases. The model reconstructed the backbone using GhostConv to minimize redundancy and integrates a C3k2_Star module to enhance small lesion detection against background noise. Additionally, a Detect Efficient (DE) head further compressed the architecture. Experimental results verified the model's efficiency, achieving a parameter count of 1.88 M and a weight size of 3.9 MB—reductions of 27.3% and 25% compared to YOLOv11n, respectively. Furthermore, the model maintained high detection performance with a Mean Average Precision (mAP50) of 75.6% and an F1-score of 69.3%, demonstrating its effectiveness in balancing architectural efficiency and accuracy in complex field environments.
Why it matches plant phenotyping methods圃場のダイズ病害病斑を画像から検出する軽量YOLOモデルの開発と性能評価が研究の中心であり、植物の病害状態を直接推定するフェノタイピング手法に該当する。
titleREAL-TIME AND PRECISE DETECTION OF FIELD SOYBEAN RUST AND BACTERIAL SPOT BASED ON IMPROVED YOLOV11N
Pepper / chilliPotatoTomatoLeafClassificationVisualization / data managementDisease symptoms / severity
Early detection of plant leaf diseases is critical for minimizing crop losses and supporting precision agriculture. While Convolutional Neural Networks (CNNs) have demonstrated high accuracy in image-based diagnosis, conventional architectures may not optimally balance spatial localization and channel-wise feature refinement, particularly in multi-crop classification settings. This study proposes a redundancy-aware dual-attention architecture, termed ATSA-DenseNet, which integrates the spatial branch of the Convolutional Block Attention Module (CBAM-Spatial) with Efficient Channel Attention (ECA) within a DenseNet121 backbone. Unlike prior dual-attention frameworks that retain full CBAM and introduce channel-level redundancy, the proposed design isolates complementary spatial and channel mechanisms to improve representational efficiency without increasing computational complexity. The framework is evaluated on controlled multi-crop PlantVillage-derived datasets comprising tomato, potato, pepper, and maize. Across both 3-crop and 4-crop configuration, ATSA-DenseNet consistently outperforms baseline DenseNet121 and single-attention variants, achieving 99.94% accuracy and 0.9994 macro-F1 on the 4-crop setting while maintaining a lightweight footprint (6.96M parameters, 2.87G FLOPs). Grad-CAM visualizations indicate improved localization of disease-relevant regions compared to the baseline. While results are obtained under controlled imaging conditions, the findings demonstrate that redundancy-aware dual-attention enhances feature discrimination efficiency in multi-class agricultural classification tasks. Future work will extend validation to real-field datasets with natural variability.
Why it matches plant phenotyping methods植物葉の病害状態を画像から推定するCNN手法を提案・評価しており、病害表現型の取得・分類手法が研究の中心である。
abstractThis study proposes a redundancy-aware dual-attention architecture, termed ATSA-DenseNet, which integrates the spatial branch of the Convolutional Block Attention Module (CBAM-Spatial) with Efficient Channel Attention (ECA) within a DenseNet121 backbone.
Rice false smut is a major panicle disease that affects rice yield and grain quality and is an important target for resistance evaluation in breeding programs. Accurate field phenotyping is important for disease assessment and resistance screening, yet current assessment relies heavily on manual visual scoring and smut ball counting, which are laborious and subject to evaluator variation. In close-range single-panicle images, false smut balls are often small, dense, occluded, adhered, making automatic detection and severity grading difficult. To address these challenges, we developed a YOLOv12-RSLW detector by integrating RepGhost, SimAM, LSCD, and WIoU into YOLOv12. Detection boxes were then used to guide the Segment Anything Model for panicle and lesion mask extraction, allowing calculation of the lesion-to-panicle area ratio as a supplementary indicator for count-based severity grading. A total of 1911 original field images were collected. After augmentation, the dataset contained 5663 images, including 4531 training images, 566 validation images, and 566 test images. Detection performance was evaluated on the test set, while SAM segmentation was assessed using 80 manually annotated original images. YOLOv12-RSLW achieved 92.06% mAP@0.5, 91.46% precision, and 87.01% recall, with 3.45 M parameters and 6.0 GFLOPs. Compared with the baseline YOLOv12, mAP@0.5 and recall increased by 3.60 and 4.37 percentage points, respectively. Within the augmented dataset, 41.2% of samples initially assigned to Grade 1 and 28.1% of those assigned to Grade 2 met the area-ratio criteria for potential reassignment to higher grades. The framework provides a quantitative approach to rice false smut severity phenotyping and may support future resistance breeding after further validation.
Why it matches plant phenotyping methodsイネいもち病の病徴を画像から検出・分割し、病斑面積比に基づく重症度を定量化するフェノタイピング手法を開発・評価しており、方法が研究の中心である。
abstractTo address these challenges, we developed a YOLOv12-RSLW detector by integrating RepGhost, SimAM, LSCD, and WIoU into YOLOv12.
Plant diseases greatly affect agricultural production, especially in developing countries, where prompt diagnosis can be quite challenging due to the limited availability of experts in real-time. Deep learning techniques for image analysis is gaining popularity and are increasingly considered an alternative to traditional manual inspection of plants. This research presents the evaluation of plant leaf disease detection system based on a convolutional neural network (CNN) optimized with different nature-inspired algorithms. The backbone model is based on the EfficientNet-B0 pretrained on ImageNet. Therefore, transfer learning is used to adapt the model to an updated PlantVillage dataset. Experiments have been conducted with multiple nature-inspired algorithms to improve generalisation and training efficiency of the prediction model. Different data preparation techniques have been carefully applied to the dataset, creating a unified approach to ensure consistency in the preprocessing pipeline for the training, validation, and testing phases. Our experiments indicate that application of the grey wolf optimizer (GWO) for tuning key hyperparameters of the model, including dropout, learning rates, and weight decay produced the best results, with an accuracy around 99.45%.
Why it matches plant phenotyping methods植物葉の病害状態を画像から分類する深層学習手法を、複数の最適化アルゴリズムで評価・改良しており、病害表現型の取得・推定が研究の中心である。
abstractThis research presents the evaluation of plant leaf disease detection system based on a convolutional neural network (CNN) optimized with different nature-inspired algorithms.
Abstract - Plant diseases can significantly affect plant growth, productivity, and overall health. This research presents a mobile-based plant analysis system designed to identify plants, assess their health condition, and analyze visible diseases from plant images. The proposed system allows users to capture an image using a mobile camera or upload an existing image. The image is processed and analyzed using machine learning and deep learning techniques. A Convolutional Neural Network (CNN) can be used to learn visual features such as leaf shape, color, spots, and disease symptoms for plant identification and disease analysis. The system also provides a health assessment and disease severity indication to support users in understanding the condition of a plant. A Flutter-based mobile application provides the user interface, while Python and Flask can be used for image-processing and model-serving tasks. The proposed approach aims to provide a simple and accessible tool for preliminary plant identification, health assessment, and disease analysis. Key Words: plant identification, plant health assessment, disease analysis, CNN, deep learning, Flutter.
Why it matches plant phenotyping methods植物画像から健康状態と病害症状・重症度を推定する機械学習システムの開発が中心であり、植物の病害状態という表現型を画像から取得・評価する方法を扱っている。
abstractThis research presents a mobile-based plant analysis system designed to identify plants, assess their health condition, and analyze visible diseases from plant images.
Visible-near infrared (Vis-NIR) spectroscopy provides rapid crop disease assessment; however, poor model generalizability remains a major limitation when models developed for a specific period are applied to batches collected at different times, primarily due to variations in physicochemical properties such as chlorophyll content, moisture level, surface texture, and tissue structure, which induce shifts in spectral distributions across batches. This study investigates deep domain adaptation to enhance cross-batch transferability for sugarcane disease classification. Two batches of healthy and symptomatic leaves were collected at different times using the same spectrometer. A customized one-dimensional convolutional neural network (1D-CNN) was trained on Batch 1 and adapted to Batch 2 using labelled samples through two strategies: retraining only the fully connected layers or fine-tuning all network parameters. Both strategies achieved 94% accuracy, with precision 0.92, sensitivity 0.97 and specificity 0.98, outperforming the non-adapted model and standard-free calibration transfer methods, namely Correlation Alignment and Transfer Component Analysis. These findings demonstrate that deep domain adaptation substantially improves the robustness and transferability of Vis-NIR classification models across heterogeneous sampling batches.
Why it matches plant phenotyping methodsサトウキビ葉の病徴分類を対象に、Vis-NIR分光と深層ドメイン適応によるモデルの開発・クロスバッチ検証が研究の中心であり、植物病害状態を直接推定している。
abstractThis study investigates deep domain adaptation to enhance cross-batch transferability for sugarcane disease classification.
Background: Faba bean is an important legume crop valued for its nutritional and soil-enriching benefits, yet its productivity is severely affected by foliar diseases. Automated image-based detection using deep learning provides a rapid and reliable approach for early disease identification and improved crop management. Methods: This study developed a machine learning-based automated framework for multi-class classification of Faba bean leaf diseases using transfer learning with the VGG16 convolutional neural network. A dataset of 8,021 RGB images collected under natural field conditions was used, comprising four classes: healthy, rust, gall and chocolate spot. Images were resized to 224 × 224 pixels and normalized prior to training. The pretrained convolutional layers of VGG16 were frozen and a custom classification head with global average pooling and dropout regularization was added. Model performance was evaluated using classification metrics. Result: The proposed model achieved an overall classification accuracy of 92.34% and a macro-averaged F1-score of 0.9227 on the test dataset. Strong classification performance was observed across all disease categories, with particularly high predictive accuracy for healthy and rust classes. The findings demonstrate the effectiveness of transfer learning for plant disease detection and highlight its potential for scalable, automated crop health monitoring in precision agriculture.
Why it matches plant phenotyping methods植物葉画像から病害状態を自動推定する深層学習手法の開発・性能評価が中心であり、植物フェノタイピング手法に該当する。
abstractThis study developed a machine learning-based automated framework for multi-class classification of Faba bean leaf diseases using transfer learning with the VGG16 convolutional neural network.
Xylella fastidiosa (Xf) is among the most devastating phytosanitary threats to Mediterranean agriculture, causing Olive Quick Decline Syndrome (OQDS). Since containment efficacy depends on timely intervention, scalable in-field screening tools are needed. This study evaluates a portable digital electronic nose, based on a carbon-nanotube sensor array combined with artificial intelligence algorithms, for the in-field screening of Xf through volatile organic compound (VOC) profiling. Three replicate acquisitions were performed on 130 olive trees (390 measurements) across four cultivars (Cellina di Nardò, Ogliarola Salentina, Ogliarola Barese, and Leccino) in four Italian regions (Apulia, Calabria, Lazio, and Tuscany). Plant status was assigned from the official status of the sampling area (demarcated OQDS focus versus Xf-free area) and supported by real-time quantitative PCR (qPCR) on every plant; within demarcated sites, plants with undetectable DNA in sampled twigs were retained as Xf+ following phytosanitary criteria, giving 216 infected and 174 healthy samples. The multidimensional sensor signals were processed with an optimized Shallow Neural Network. Under plant-grouped 80/20 validation, keeping each plant’s replicates in the same subset, the model achieved (93.3 ± 4.0)% accuracy, (97.7 ± 3.5)% sensitivity, and (88.2 ± 8.3)% specificity (mean ± SD). A feature-importance analysis revealed a reproducible, though not chemically resolved, VOC-related response pattern. This low-cost, portable Internet of Things (IoT) device offers a proof-of-concept screening approach for Xf surveillance, pending plant-level and external validation.
Why it matches plant phenotyping methods植物の感染状態をVOCセンサーとAIで直接推定する現地スクリーニング手法を開発・評価しており、植物病害状態の取得が研究の中心である。
abstractThis study evaluates a portable digital electronic nose, based on a carbon-nanotube sensor array combined with artificial intelligence algorithms, for the in-field screening of Xf through volatile organic compound (VOC) profiling.
Rice leaf diseases pose a significant threat to global food security by reducing crop productivity and causing substantial economic losses. The traditional diagnosis method is manual method, which is low in efficiency, subjective and not suitable for large-scale agricultural monitoring. Despite the advances in automated disease detection using deep learning methods like CNNs, GANs, and transfer learning models, these techniques remain highly computational, not very flexible, and struggle to perform well in different imaging scenarios. Considering these drawbacks, this paper introduces an Explainable Deep Q-Learning based CNN framework which employs CNN-based feature extraction and Deep Q-learning-based adaptive policy optimization for rice leaf disease classification. The proposed model continuously refines the classification actions through reward-based learning, which makes the model more robust in various agricultural imaging environments, in contrast to traditional supervised CNN models that have static classification decisions. The proposed model achieved 98.5% accuracy, 98.52% precision, 98.50% recall, and a 98.51% F1-score, outperforming existing CNN, GAN, reinforcement learning, and transformer-based methods. It also offers a high computational efficiency of 14.2 GFLOPs, 248 MB memory consumption, ~ 48 min of training time, and 6.8 ms inference time per image suitable for resource constrained applications in agriculture. The results demonstrate the effectiveness, scalability, and practical applicability of the proposed framework. The proposed framework performs well on benchmark datasets but more research in the deployment of the edge-devices under different real-world agricultural settings will be investigated in future work.
Why it matches plant phenotyping methodsイネ葉の病害状態を画像から分類する深層学習手法の開発・評価が研究の中心であり、植物の病害表現型を直接推定しているため。
abstractthis paper introduces an Explainable Deep Q-Learning based CNN framework which employs CNN-based feature extraction and Deep Q-learning-based adaptive policy optimization for rice leaf disease classification.
Reproduction assets foundThe paper trains its Deep Q-CNN rice leaf disease classifier on public Kaggle rice leaf image datasets, which are cited with explicit public URLs and qualify as paper-specific phenotyping image inputs. The authors' own derived data/analysis artifacts are only available upon request, so no authors' code or trained modelDataset · publicSoni Gautam. Rice Leaf Bacterial and Fungal Disease Dataset. Kaggle. Available:Open asset ↗Kagglepdf-page:24 lines:1-94Code / dataset availability confirmedCrossref · checked 15 Sept 2026
Plant diseases are still posing a challenge to the productivity, quality of crops, and food security, especially in locations where field diagnosis is based on manual visual inspec-tion. This paper assesses deep learning network-based automated classification of plant leaf diseases on public RGB leaf-image datasets, such as the Kaggle New Plant Diseases Dataset (Augmented) and PlantVillage images. They investigated four archi-tectures: EfficientNetV2B0, ResNet152V2, DenseNet201, and one hybrid Vision Trans-former (ViT)-based model. The steps of the experiment involved loading the dataset, exploratory analysis, preprocessing, resizing, normalizing, augmentation, transfer learning, independent model training, and evaluation metrics such as accuracy, preci-sion, recall, F1-score, training curves, testing results, and confusion matrices. The hy-brid ViT-based model was reported to have the best accuracy of 99.5%. On the smaller seven class subset of PlantVillage, EfficientNetV2B0 scored 98.11%. On the 38-class dataset, DenseNet201 improved test accuracy (97.34) and validation classification ac-curacy (around 98). ResNet152V2 scored 97.01 on the 38-class test set. The results demonstrate that CNN and transformer-based models can help to recognize plant diseases accurately whereas hybrid attention-based structures provide a promising path to enhance fine-grained classification. Since the model notebooks had varying class settings and splits, the comparison is seen as a model-structured assessment as opposed to a precisely identical benchmark across all architectures.
Why it matches plant phenotyping methods植物葉画像から病害状態を分類する深層学習手法を複数モデルで比較・評価しており、病害表現型の取得・抽出と技術検証が研究の中心である。
abstractThis paper assesses deep learning network-based automated classification of plant leaf diseases on public RGB leaf-image datasets
Reproduction assets foundThe paper's phenotyping inputs are two public plant leaf-image datasets explicitly named in the Data Availability statement: the Kaggle New Plant Diseases Dataset (Augmented) and the PlantVillage dataset, both with public URLs. No author code, models, or supplementary materials are deposited (supplementary materials: 'Dataset · publicy available. Plant leaf images were
obtained from the Kaggle New Plant Diseases Dataset (Augmented) and PlantVillage
datasets. The datasets contain publicly accessible RGB images of healthy and diseased
plant leaves used for supervised image classification research.
DATASET SOURCES
Kaggle New Plant Diseases Dataset (Augmented):
https://www.kaggle.com/datasets/vipoooool/new-plant-diseases-dataset
PlantVillage Dataset: https://plantvillage.psu.edu/All processed data, experimental configurations, and model implementation details are
described within the manuscript. Additional materials may be made available from the
corresponding author upon reasonable request.
ACKNOWLEDGMENTS
The author acknowOpen asset ↗Kaggle · new-plant-diseases-datasetpdf-raw-page:24 lines:1-23Dataset · publicgmented) and PlantVillage
datasets. The datasets contain publicly accessible RGB images of healthy and diseased
plant leaves used for supervised image classification research.
DATASET SOURCES
Kaggle New Plant Diseases Dataset (Augmented):
https://www.kaggle.com/datasets/vipoooool/new-plant-diseases-dataset
PlantVillage Dataset: https://plantvillage.psu.edu/All processed data, experimental configurations, and model implementation details are
described within the manuscript. Additional materials may be made available from the
corresponding author upon reasonable request.
ACKNOWLEDGMENTS
The author acknowledges Istanbul Aydin University for academic support and research
guidance duringOpen asset ↗PlantVillagepdf-raw-page:24 lines:1-23Plant phenotyping relevance match · UnverifiedCrossref · checked 15 Sept 2026
Agricultural production faces significant annual losses due to plant diseases, with economic impacts exceeding 40 million dollars and contributing to acute hunger affecting over 281.6 million people in 2023. The timely and accurate identification of plant diseases through leaf image analysis is crucial to mitigate these losses and ensure global food security. This study proposes a lightweight Convolutional Neural Network model, inspired by the MobileNet architecture, designed to classify various plant leaf diseases efficiently. Leveraging a publicly available dataset, this research focuses on developing a model that balances high performance with computational efficiency, making it suitable for real-world applications in resource-constrained environments. The proposed model, named LDPNet, achieved an outstanding accuracy of 99.62%, alongside precision, recall, F1-Score, and AUC metrics of 99.16%, 99.08%, 99.11%, and 99.99%, respectively. A comprehensive comparative analysis was conducted against MobileNetV2 and a reference model from previous research, highlighting the superior performance of LDPNet in terms of both accuracy and efficiency. The results demonstrate that the proposed architecture not only maintains high classification performance but also significantly reduces the number of parameters, making it a practical and scalable solution for plant disease identification. This study contributes to the growing field of agricultural technology by providing a robust, lightweight, and efficient tool for early disease detection, with the potential to enhance crop management and reduce economic losses in agriculture.
Why it matches plant phenotyping methods葉画像から植物病害を分類する軽量CNNを開発し、性能・効率を比較評価しており、植物の病害状態を取得する方法が研究の中心である。
abstractThis study proposes a lightweight Convolutional Neural Network model, inspired by the MobileNet architecture, designed to classify various plant leaf diseases efficiently.
Emerged Technologies include imparted potentiality to generate adequate food to converge ultimatum of society. However, aspects like, climate change, plant disease, refuse at pollinators as well as others are demanding to farmers. The presence of diseases pulls up the maturation of their corresponding species. Plant disease recognition using image processing and machine learning (ML) with data collected from Internet of Thing (IoT) sensors has been receiving greater amount of interest in recent years, however timely disease detection remains a demanding issues. Despite early disease detection though reduces the risk of destruction to plants nevertheless the noise present in the sensor networks (i.e. Internet of Things) while collecting internet scrapped images compromise overall precision and accuracy. To address on this research gap, i.e., addressing noise with timely disease detection, in this work ML based plant disease detection method called, Intersection Histogram and Rotational Invariant Principal Component Regression (IH-RIPCR) is introduced. IH-RIPCR technique is dividing as pre-processing and feature extraction. First with the raw plant dataset obtained as input from Corn or Maize Leaf Disease Dataset, pre-processing is done employing Intersection Histogram based Contrast Enhancement model. Second with the obtained pre-processed contrast enhanced images is subjected as input to ML-based Rotational Invariance Principal Component Regression feature extraction model to extract relevant features pertaining to corn or maize leaf images for disease detection in an accurate and precise manner. Experiments are conducted with corn or maize plant leaf dataset with different existing methods to verify hypothesis potentiality of IH-RIPCR technique. Significance of technique is evaluated based on numerous parameters in terms of PSNR, processing time, precision, recall and accuracy respectively.
Why it matches plant phenotyping methodsトウモロコシ葉の病徴を画像から検出する画像処理・機械学習手法を開発し、既存法との比較評価を行っており、植物病害状態の表現型取得が中心です。
abstractin this work ML based plant disease detection method called, Intersection Histogram and Rotational Invariant Principal Component Regression (IH-RIPCR) is introduced.
Maize diseases affecting leaves, stalks, and ears can substantially reduce yield and quality; therefore, rapid and accurate recognition in complex field environments is important for intelligent agricultural monitoring. To address the large-scale variation, weak fine-grained texture, and strong background interference associated with multi-part maize diseases, this study proposes YOLOv11-MPD (YOLOv11 for Maize Multi-Part Disease Detection), a maize disease detection algorithm based on YOLOv11n. The method jointly improves spatial position awareness, shallow detail preservation, local-context modeling, key semantic-region enhancement, and lightweight detection-head reconstruction. RFCAConv, C3k2_RFCAConv, and Detect_LSDECD are introduced into the baseline network to strengthen directional texture modeling, multi-scale feature aggregation, and detection-head feature representation. FG-RFCAConv, HGD-C3k2, LCA-C3k2, and GRN-BiAttn are further designed for high-frequency differential gated detail compensation, P3 high-resolution detail enhancement, local-context fusion, and global-response-normalized attention regulation, respectively. Experimental results show that YOLOv11-MPD achieves Precision, Recall, mAP50, and mAP50-95 of 72.3%, 72.8%, 79.5%, and 50.2%, improving YOLOv11n by 2.4, 2.5, 2.9, and 2.4 percentage points, respectively, while reducing parameters from 2.6 M to 2.4 M. These results indicate that, within the scope of the dataset used in this study, YOLOv11-MPD improves multi-part maize disease detection under complex field conditions. However, the current conclusions are limited to the constructed dataset, and further validation using larger multi-region, multi-season, and multi-device datasets is required to evaluate its broader generalization ability.
Why it matches plant phenotyping methodsトウモロコシの葉・茎・穂における病害状態を画像から検出するアルゴリズムを開発し、性能比較・検証しており、植物表現型取得が研究の中心です。
abstractthis study proposes YOLOv11-MPD (YOLOv11 for Maize Multi-Part Disease Detection), a maize disease detection algorithm based on YOLOv11n.
Abstract Deep convolutional networks now classify leaf images on curated benchmarks such as PlantVillage with accuracies close to the measurement ceiling of those datasets, which has shifted the open questions away from raw accuracy toward two under-reported issues: which components of a composite pipeline actually cause the result, and whether the components that matter on laboratory images are the same ones that matter on field photographs. We address both with a classification framework evaluated under a protocol that fixes every development decision before the independent test data are read. A Mask R-CNN stage localizes the dominant leaf, the accepted box is expanded by a validation-selected 5% margin and resized to a shared 224 by 224 input, and the same localized image is passed to ResNet50, InceptionV3, and MobileNetV2 together with an extractor that produces eighteen colour and shape descriptors. The forty-five class probabilities and eighteen descriptors form a sixty-three-dimensional input to a neural meta-classifier developed by three repetitions of stratified five-fold cross-validation. On a locked 3,101-image PlantVillage test partition of fifteen classes the framework reached 99.77% accuracy and 99.75% macro F1 with seven misclassifications, and a one-component-at-a-time ablation confirmed that every stage contributed. The same design was then trained and evaluated entirely within a separate thirteen-class PlantDoc field-image dataset, where it reached 90.03% accuracy and 89.40% macro F1. This is a within-PlantDoc experiment and not a controlled-to-field transfer test, so the figure measures how the pipeline behaves on field imagery rather than how a PlantVillage-trained model survives a domain shift. The central finding comes from running the identical ablation on both datasets: on clean images the ensemble breadth and descriptors provide the incremental gains, but under field conditions the ordering changes, and leaf localization and learned fusion become the decisive components. Removing localization cost 2.83 accuracy points and replacing the neural fusion with soft voting cost a further 2.08 points, the two largest effects on PlantDoc. The contribution is a controlled and transparent account of where each component of a localization-aware plant disease classifier earns its place, and of how that ordering shifts between laboratory and field acquisition.
Why it matches plant phenotyping methods葉画像から植物病害状態を推定する分類パイプラインの開発・アブレーション検証が中心であり、単なる病害実験や routine measurement ではない。
titleA Localization-Aware Heterogeneous CNN Ensemble with Neural Meta- Fusion for Plant Disease Classification, with a Component Analysis on Laboratory and Field Images
Reproduction assets found保存済みの本文根拠を更新済みルールで再検証し、公開資産1件を確認しました。Dataset · publicThe classification subset used here (20,638 images spanning fifteen pepper-bell, potato, and tomato classes) was obtained from PlantVillage, which is openly accessible at https://www.kaggle.com/datasets/emmarex/plantdisease.Open asset ↗Kaggle · emmarex/plantdiseaselines:314-336Plant phenotyping relevance match · UnverifiedCrossref · checked 14 Sept 2026
Published26 Aug 2026International Research Journal of Computer ScienceCited by 0 · OpenAlex ↗
Tomato leaf diseases must be identified early and accurately in order to reduce output loss and advance sustainable agriculture. Deep learning models have shown encouraging results in the identification of plant diseases, but their high processing requirements and inability to adjust to field-specific limitations sometimes make it difficult to implement them in real-world applications. For the purpose of accurately and efficiently classifying tomato leaf diseases, we present a convolutional neural network based on AlexNet that is lightweight and field-aware. Our proposed model is designed with less complexity than traditional architectures and is able to perform inference faster without sacrificing accuracy, making it suitable for real-time implementation in low resource agricultural environments. The algorithm was trained and tested on a dataset of 7704 augmented images of tomato leaves from 7 different disease categories. The Lightweight AlexNet achieved accuracy comparable to VGG variants and outperformed deeper models such as ResNet (96.81%) with lower parameter overhead. It was trained from scratch using TensorFlow & Keras on 100×100 pixel inputs, achieving a training accuracy of 99.15% and a validation accuracy of 99.74%. Moreover, an effective structure of the model enables the installation on edge devices, which offers a scalable precision farming solution. Our work helps to bridge the gap between deep learning research and real-world application in agriculture, allowing the development of real-field, resource-efficient disease detection systems.
Why it matches plant phenotyping methodsトマト葉の病害状態を画像から分類する軽量CNNを開発し、精度・計算量・エッジ実装性を評価しており、植物フェノタイピング手法が研究の中心である。
abstractFor the purpose of accurately and efficiently classifying tomato leaf diseases, we present a convolutional neural network based on AlexNet that is lightweight and field-aware.
Plant diseases can reduce crop quality and productivity, making early detection an important aspect of modern agriculture. Recent advances in deep learning, particularly Convolutional Neural Networks (CNN), have shown promising performance in image-based plant disease classification. This study proposes an explainable deep learning approach for multi-class plant disease classification using ResNet50 and EfficientNetB0 combined with Grad-CAM visualization. The experiments were conducted using the PlantVillage dataset consisting of 15 classes of healthy and diseased plant leaves.The research process included image preprocessing, data augmentation, transfer learning, model training, performance evaluation, and explainability analysis. The dataset was divided into training and validation sets with a ratio of 80:20. Model performance was evaluated using accuracy, loss, confusion matrix, precision, recall, and f1-score metrics. Experimental results showed that ResNet50 achieved the best performance with an accuracy of 92% and a validation loss of 0.19, outperforming EfficientNetB0 which obtained 76% accuracy and 0.82 validation loss. The classification report demonstrated that ResNet50 provided more stable and consistent predictions across most disease classes. Furthermore, Grad-CAM visualization successfully highlighted disease-relevant regions such as lesions, discoloration, and damaged leaf areas, improving the interpretability of the CNN model. The findings indicate that the combination of ResNet50 and Grad-CAM is effective for plant disease classification and provides better explainability for deep learning-based agricultural applications.
Why it matches plant phenotyping methods植物葉の病害状態を画像から分類・可視化する深層学習手法が研究の中心であり、病徴領域の推定も評価しているため、植物フェノタイピング手法として採用。
abstractThis study proposes an explainable deep learning approach for multi-class plant disease classification using ResNet50 and EfficientNetB0 combined with Grad-CAM visualization.
Abstract Purpose : The system for diagnosing diseases in Solanaceae crops (SolanAPP), including tomatoes, potatoes, peppers, and eggplants, represents a promising tool for supporting decision-making in agricultural fields using AI. This system reconciles the computational intensity of multitasking models with the infrastructural limitations of rural environments, thereby increasing digital literacy. Its architecture is based on two fundamental pillars: (i) autonomous, offline operation for the detection and classification of diseases in Solanaceae crops; (ii) a georeferenced epidemiological surveillance network with agricultural recommendations for crop monitoring. Methods : The core diagnostic process combines crop-specific semantic segmentation and disease classification models exported to TensorFlow Lite, enabling on-device visual inference and pixel-level severity estimation. An optional online layer integrates Groq’s large language model (LLM)-based reasoning and Firebase services to generate structured agronomic explanations and facilitate the creation of georeferenced community reports when a connection is available. Preprocessing and management of the dataset were performed using the Roboflow platform. The mobile app was developed natively in Kotlin. Model performance was rigorously evaluated using accuracy, recall, F1 score, mean IoU, mPA, inference latency, model size, and decision matrix. The optimal model for the crop was selected using Simple Additive Weighting (SAW). Finally, the overall framework quality and usability were evaluated in Cuba through a user validation survey using a 5-point Likert scale and aligned with the ISO/IEC 25010 software quality model. Results : The model that yielded the best results for most crops was DeepLabV3+ with MobileNetV2, which achieved a classification accuracy of over 97\% while operating with lower inference latency. Beyond individual diagnoses, the system incorporates a collaborative georeferencing feature that allows users to share observations and precise geographic coordinates of detected pathologies to facilitate regional epidemiological monitoring. The user satisfaction survey yielded a satisfaction rating of 4.5/5, with users highlighting the importance of offline diagnosis. Conclusion : Plant disease diagnosis using computer vision can support earlier intervention in resource-constrained agricultural settings, but practical deployment requires models that are accurate, lightweight, interpretable, and usable under limited connectivity. SolanAPP, an offline-first Android framework for detecting foliar pathologies in Solanaceae crops, not only establishes a framework for disease identification in complex natural environments but also provides a theoretical and practical foundation for automated agronomic treatment recommendations and community-based crop surveillance. Impact SolanAPP is a free framework that supports the synergy between multitask deep learning for offline disease diagnosis and LLM-driven reasoning for decision-making in the field. Beyond the quantitative metrics obtained from the selected models, the deployment of SolanAPP in rural contexts serves a fundamental socio-technical purpose: it acts as a catalyst for open access, digital literacy, and agronomic decision-making under unfavorable development conditions. It also represents a strong effort to foster a collaborative epidemiological surveillance network in the agricultural sector. Although it faces challenges, such as the use of field images for model training, this framework marks a promising step in the deployment of edge AI, balancing technical accuracy with practical utility.
Why it matches plant phenotyping methods植物病害を画像からセグメンテーションし、病害のピクセル単位の重症度を推定する手法と、オフライン実装・性能評価を中心とした研究であり、植物状態の計測方法が中核です。
abstractThe core diagnostic process combines crop-specific semantic segmentation and disease classification models exported to TensorFlow Lite, enabling on-device visual inference and pixel-level severity estimation.
Abstract Plant diseases represent major constraints on agricultural productivity, often resulting in significant yield losses. This study presents FitoView, a cloud-based mobile decision support system that integrates deep learning with real-time weather forecasting for sustainable plant disease management. Demonstrated through a case study on Cercospora leaf spot in chili pepper, the system employs custom YOLOv8 models for automated disease detection, classification, and pixel-level severity quantification, combined with meteorological data from the OpenMeteo API. The core innovation lies in an integrated decision matrix that considers three dimensions: AI-assessed disease severity, 48-hour climatic risk forecasts, and optimal spraying conditions, generating four contextualized management scenarios with tailored re-evaluation periods (3-10 days). OpenMeteo API validation across four cities in Sergipe demonstrated very strong correlations, with Pearson coefficients (r) of 0.90-0.97 for temperature, 0.81-0.95 for humidity, and 0.92-0.95 for solar radiation, corresponding to R² values of 0.65-0.94. The YOLOv8 object detection model achieved perfect precision (100%) and macro-averaged recall of 89% across all disease classes, with Cercospora leaf spot detection reaching perfect metrics (100% precision, recall, and F1-score). Field validation in Lagarto, Sergipe, confirmed the system’s practical use: it accurately detected Cercospora leaf spot, estimated severity, and, combined with climatic risk, generated recommendations for alternative treatment and short-term re-evaluation. The Progressive Web Application architecture, deployed on a Cloud Platform, ensures accessibility without installation requirements, while the modular design enables scalability to additional crops and diseases, representing a significant advancement toward democratizing AI-powered precision agriculture tools for smallholder farmers in Brazil.
Why it matches plant phenotyping methods植物病害の検出・分類と病斑のピクセルレベル重症度推定をYOLOv8で実装・検証したシステムであり、植物状態の取得・定量化が中心的な技術貢献です。
abstractThe core innovation lies in an integrated decision matrix that considers three dimensions: AI-assessed disease severity, 48-hour climatic risk forecasts, and optimal spraying conditions
Abstract Ascochyta blight is a widely occurring chickpea fungal disease that can cause severe yield loss. Breeding for crop resistance benefits from high‐throughput evaluation of plant–pathogen interactions in genotypes which can serve as sources of resistance. Current practice for the evaluation is human visual scoring of disease symptoms, which is limited in throughput and precision. Here, we developed open‐source sensor‐based phenotyping methods using red, green, blue (RGB) and multispectral imaging to measure resistance components and predict disease severity classes in chickpea and wild relatives grown outdoors over three seasons. Pots were imaged at multiple time points with a ground‐based platform, providing 86,792 RGB and 8199 multispectral images. Lesion count was estimated with YOLOv5 (You Only Look Once version 5) object detection (F1 score = 0.27–0.30), fractional green canopy cover was estimated from RGB images, and vegetation indices were extracted from multispectral images. A model trained on growth rates of fractional green canopy cover normalized to control genotypes could predict disease severity classes with an accuracy of 65% –81 % ( 0.43–0.59) on unseen data from three different seasons. The developed methods provide a pathway to predict visual disease severity scores and support the breeding of crops for disease resistance. They may also be used to characterize disease progression, to find underlying resistance mechanisms, and for early disease detection.
Why it matches plant phenotyping methodsRGB・マルチスペクトル画像と地上センサープラットフォームを開発し、病斑数、緑色キャノピー被覆率、病害重症度を推定・予測する手法が研究の中心であるため。
abstractHere, we developed open‐source sensor‐based phenotyping methods using red, green, blue (RGB) and multispectral imaging to measure resistance components and predict disease severity classes in chickpea and wild relatives grown outdoors over three seasons.
The rapid detection and continuous monitoring of crop health and disease outbreaks are critical components of modern precision agriculture, essential for maintaining global food security. Traditional field-based scouting methods, while accurate, are often labor-intensive, time-consuming, and limited by spatial coverage, making them inadequate for large-scale agricultural operations. Remote sensing (RS) technologies—spanning satellite imagery, drone-based aerial platforms, and proximal sensors—offer a powerful, non-destructive, and scalable alternative for capturing high-resolution spectral and temporal data. This paper provides a comprehensive evaluation of current remote sensing applications in crop health monitoring and disease surveillance. We analyze how vegetation indices derived from multispectral and hyperspectral data, such as NDVI and red-edge parameters, serve as sensitive indicators of physiological stress and pathogen infection, often manifesting before visible symptoms appear. Furthermore, we explore the integration of machine learning and artificial intelligence algorithms in automating disease identification and severity mapping. By synthesizing recent advancements in sensor technology and data analytics, this paper demonstrates that remote sensing is indispensable for proactive, site-specific management. The findings emphasize that a multi-scale RS approach—integrating broad-scale satellite monitoring with high-resolution drone sorties—enables farmers to optimize input efficiency, minimize yield losses, and enhance the overall resilience of agro-ecosystems against biotic and abiotic stressors.
Why it matches plant phenotyping methods作物の健康・病害を対象に、リモートセンシング、センサー、植生指数、機械学習による状態・重症度推定を包括的に評価するレビューであり、フェノタイピング手法が中心です。
abstractThis paper provides a comprehensive evaluation of current remote sensing applications in crop health monitoring and disease surveillance.
Abstract Disease management aims to protect crop yield and quality and reduce economic losses caused by plant pathogens. Consequently, reducing disease is a central objective of applied plant pathology. However, what constitutes effective disease control, and how it is measured and analyzed, varies substantially among studies. We conducted a systematic methodological review to characterize how plant disease control has been evaluated in the plant pathology literature over the past 15 years. We searched selected plant pathology journals for articles containing "control" in their titles and used an artificial intelligence-assisted workflow, followed by human verification, to extract and standardize information on experimental settings, disease measurements, measurement scales, and statistical analyses. The final dataset comprised 340 articles representing diverse host-pathogen systems and experimental environments. Disease control was evaluated using a wide range of response variables, most commonly disease severity and incidence, with substantial heterogeneity in measurement scales and sampling practices. Despite this diversity, statistical analysis was remarkably uniform: 79.4% of articles relied exclusively on ANOVA-based approaches. Among studies using ordinal disease scales, 73.3% included ANOVA in the analysis, whereas only 10.6% explicitly reported data transformation. Mean-separation procedures were also common, particularly Tukey, Fisher's LSD, and Duncan's multiple range test; Duncan's test was reported in 20.3% of all articles and varied markedly among journals. Our findings reveal a marked contrast between diversity in how plant disease control is measured and the narrower range of methods used to analyze those measurements. Greater alignment among biological meaning, measurement properties, experimental design, and statistical analysis could improve transparency, comparability, and interpretation in disease-management research.
Why it matches plant phenotyping methods植物病害の重症度・発生率など、植物の病害状態をどのように測定・解析するかを体系的にレビューしており、測定尺度、サンプリング、統計手法の標準化が中心的な方法論的貢献である。
abstractWe conducted a systematic methodological review to characterize how plant disease control has been evaluated in the plant pathology literature over the past 15 years.
Plant diseases destroy 20–40% of global food production annually, posing a critical threat to food security for a projected population of 9.7 billion by 2050. Conventional diagnostic approaches relying on expert visual assessment are slow, costly, and unsuitable for modern agricultural scales. While deep convolutional neural networks demonstrated early promise, single-modality, image-centric systems consistently fail under real-world field conditions characterized by variable lighting, co-occurring infections, and cultivar diversity. This review synthesizes a decade of progress across four interconnected frontiers: the evolution of deep learning architectures for plant disease detection; the adaptation of foundation models including CLIP, SAM, and DINOv2 to agricultural contexts; the development of multimodal fusion frameworks integrating imagery, environmental, genomic, and hyperspectral data; and the transition from static disease diagnosis to descriptive comparison of reported metrics, which suggested that multimodal approaches frequently reported improved diagnostic performance relative to corresponding single-modality baselines, although direct cross-study comparison was limited by methodological heterogeneity. A systematic review following PRISMA guidelines identifies eligible comparative studies. Descriptive comparison of reported performance metrics across these studies indicated that multimodal approaches generally achieved higher accuracy and sensitivity than single-modality models, particularly for pre-symptomatic disease detection. Eight critical research gaps are identified, including the absence of a unified agricultural foundation model and limited climate-aware forecasting under non-stationary climate projections. A structured research agenda is proposed to accelerate translation from laboratory performance to globally equitable, field-deployable crop protection systems.
Why it matches plant phenotyping methods植物病害の画像ベース検出・予測手法を対象とする系統的レビューであり、植物の病徴・病害状態を観測から推定するフェノタイピング手法のレビューとして中心的です。
titleMultimodal Deep Learning and Foundation Models for Early Detection and Forecasting of Plant Diseases
Abstract In modern agriculture, it is essential to identify the early symptoms of plant diseases and to accurately maintain the productivity of the crop and reduce economic losses. Foliar diseases are a special concern in peach because they can cause yield as well as quality if not timely detected. Artificial intelligence, machine learning and deep learning are some of the advanced technologies that are gaining great importance in today's agriculture, especially with the image analysis applications. In this study, a deep learning method for automated detection and classification of three peach leaf diseases and healthy class was presented based on image data. The dataset were taken at different phenological and disease stages under temperate conditions in Kashmir with four classes Healthy, Leaf Curl, Shot hole and Rust. Three convolutional neural networks (CNNs) architectures were applied, VGG-16, ResNet 50 and Xception were trained using transfer learning and Inception-V4 was trained from scratch for a comparative study of the learning strategies. Data augmentation techniques were applied to improve generalization. Results show that all models were able to learn disease specific features well. The result of Inception-V4 was found to be highest with 97.50%, followed by ResNet-50 with 94.49%, VGG-16 with 92.04% and Xception with 75.95%. The results of transfer learning-based architectures were also good and competitive but the best results obtained from the Inception-V4 architecture reveal its capability in modelling complex visual patterns. The results highlight the potential of deep learning techniques for early detection of diseases in peach, supporting precision agriculture and better disease management.
Why it matches plant phenotyping methodsモモ葉の画像から病害症状を自動検出・分類する深層学習手法が研究の中心であり、植物の病害状態を直接推定しているため。
abstracta deep learning method for automated detection and classification of three peach leaf diseases and healthy class was presented based on image data.
Potato, one of the world's most important staple food crops, is highly susceptible to various foliar diseases that significantly affect its productivity and pose a serious threat to food security, thereby contributing to economic losses and impacting farmers’ income. Therefore, early and accurate detection is essential. Conventional detection methods rely primarily on manual observation, which is time-consuming and requires specialized personnel. In this study, five convolutional neural network (CNN) architectures were evaluated for the automatic classification of potato leaf diseases, including pretrained models (ResNet50, MobileNet, and VGG16) and models trained from scratch (AlexNet and LeNet-5). The dataset was constructed by integrating and selecting images from publicly available Kaggle repositories, resulting in a total of 6,691 images distributed across five classes: early blight, late blight, potato leafroll virus (PLRV), mosaic virus (PVY), and healthy leaves. Multiple experiments were conducted by varying hyperparameters such as batch size, optimizers, and the number of training epochs. The results show that VGG16 achieved the best performance, with an accuracy of 99.87%, outperforming the other architectures. Additionally, a mobile application based on the optimal model was developed for real-time detection. These findings demonstrate the potential of deep learning for intelligent and scalable agricultural diagnostic systems.
Why it matches plant phenotyping methodsジャガイモ葉の病害状態を画像から自動分類するCNN手法を比較・評価し、最適モデルと実時間アプリを開発しており、植物表現型取得が中心である。
abstractfive convolutional neural network (CNN) architectures were evaluated for the automatic classification of potato leaf diseases
Early detection of latent fungal decay caused by Penicillium italicum(P. italicum) and Penicillium digitatum(P. digitatum) remains challenging due to the absence of visible symptoms. In this study, a Vis-NIR hyperspectral imaging framework was developed to characterize early biochemical alterations in navel oranges. To address sample scarcity, a generative modeling approach (WGAN-GP) was employed to capture the intrinsic physiological variability of infected tissues. The successive projections algorithm (SPA) identified 20 key wavelengths associated with water redistribution (OH), carbohydrate depletion (CH), and chlorophyll degradation. These wavelengths were expanded into continuous ROI windows (W = 17), enabling integration of narrow-band pigment signals and broad-band absorptions related to water and carbohydrates via a multi-scale mixture-of-experts (MS-MoE) network. The framework achieved a classification accuracy of 97.10% and an F1-score of 0.9666. These results demonstrate that specific spectral absorption windows can serve as reliable, chemically interpretable spectral biomarkers for detecting early pathological changes in citrus fruit.
Why it matches plant phenotyping methodsVis-NIRハイパースペクトル画像と解析モデルを開発し、柑橘果実の初期病変をスペクトル特徴から推定する方法が研究の中心であるため、植物病害表現型の計測手法として含める。
abstracta Vis-NIR hyperspectral imaging framework was developed to characterize early biochemical alterations in navel oranges.
Accurately quantifying the areas of necrotic lesions on plant leaves is essential for evaluating plant-pathogen interactions and disease resistance. Although digital image analysis methods using ImageJ are widely employed, they often require case-specific optimization and may not be readily applicable across different experimental conditions. Furthermore, many studies have used ImageJ for lesion measurement without providing methodological details, which limits reproducibility. Here, we present a simple, step-by-step ImageJ workflow for measuring irregular necrotic lesions using a standard personal computer and mouse. The procedure relies on manual lesion selection using the freehand selection tool, followed by Gaussian smoothing, binarization, and automated particle analysis to extract lesion area measurements. By balancing manual isolation with computational thresholding, this protocol eliminates the need for extensive parameter tuning. This approach provides an accessible, reliable alternative to time-consuming color thresholding methods, thereby improving transparency and reproducibility in lesion quantification. The workflow's reproducibility has been confirmed through both intra-user and inter-user analyses. Key features • Relies on simple manual freehand selection combined with minimal image processing, requiring only a standard computer and mouse without specialized software or advanced training. • Enables accurate quantification of irregular necrotic lesions in conditions where automated thresholding methods require time-consuming optimization. • Provides a fully detailed, reproducible ImageJ workflow addressing common gaps in published methods, facilitating direct implementation. • Demonstrates high reproducibility, validated by intra-user and inter-user statistical analyses, ensuring reliable lesion quantification regardless of the operator.
Why it matches plant phenotyping methods植物葉の壊死病斑面積を画像から抽出するImageJワークフローを開発し、ユーザー内・ユーザー間解析で再現性を検証しており、病害表現型の取得手法が中心である。
abstractHere, we present a simple, step-by-step ImageJ workflow for measuring irregular necrotic lesions using a standard personal computer and mouse.
Accurate quantification of plant disease severity is essential for evaluating host-pathogen interactions and assessing the effectiveness of disease management strategies. Traditional visual scoring methods and manual estimation of infected tissue are widely used but are often subjective and prone to observer bias. Digital image analysis offers an objective alternative by enabling automated identification and quantification of symptomatic plant tissues based on color and spatial characteristics. Here, we present a MATLAB-based image processing protocol for differentiating diseased and healthy plant tissue from digital leaf images. The workflow involves acquisition of standardized leaf images, conversion of RGB images into hue-saturation-value (HSV) color space, segmentation of diseased tissue using defined HSV thresholds, refinement of the segmented mask through morphological operations, and extraction of the whole leaf area. The protocol then calculates the diseased area and total leaf area in pixels and computes the percentage of infected tissue. The method uses MATLAB together with the Image Processing Toolbox and can be implemented using simple scripts. This protocol enables rapid and reproducible quantification of disease severity in plant leaves exhibiting visually distinct symptoms such as necrotic lesions or blight patches. By minimizing observer bias and providing quantitative measurements of infected area, the protocol offers a practical and reproducible approach for plant disease phenotyping and evaluation of disease management strategies across diverse plant-pathogen systems where diseased tissues can be clearly distinguished from healthy tissues under reasonably controlled imaging conditions. Key features • A reproducible MATLAB-based workflow for separating diseased and healthy plant tissue using color-space segmentation. • Applicable to plant diseases where symptomatic tissue contrasts clearly with healthy tissue (necrosis, blight lesions, rot patches). • Requires digital leaf images, MATLAB, and the MATLAB Image Processing Toolbox for image processing and disease quantification. • Enables rapid calculation of diseased leaf area and disease severity using automated pixel-based quantification.
Why it matches plant phenotyping methods植物病斑を画像から分割・定量し、感染面積と病害重症度を算出するMATLAB画像解析プロトコルが研究の中心であり、植物病害表現型の取得・抽出手法に該当する。
abstractHere, we present a MATLAB-based image processing protocol for differentiating diseased and healthy plant tissue from digital leaf images.
Reproduction assets foundThe protocol explicitly deposits its authors' MATLAB image-processing workflow (HSV segmentation, mask refinement, pixel-based disease quantification) in a public GitHub repository with README instructions and example images.Code · publicGitHub repository containing the MATLAB source code, README file with installation and execution instructions, and representative example image(s): https://github.com/pankajborahmajuli-source/Leaf-Disease-Detection-MATLAB-Code/blob/main/README.mdOpen asset ↗Leaf-Disease-Detection-MATLAB-Codehtml-lines:112-148Plant phenotyping relevance match · UnverifiedCrossref · checked 15 Sept 2026
Food safety globally is threatened by crop disease, which creates a major obstacle to yield losses, so there is an urgent need for rapid, precise, and large-scale diagnostic methods for all the global risks crops are exposed to from disease. While imaging sensors, as well as Artificial Intelligence (AI), have made great strides in recognising plant disease, most literature does not have a comprehensive analysis that combines methods, technology, and implementation. Therefore, a systematic literature review follows PRISMA methods; we review 61 excellent studies published within the last five years that outline the advancement of imaging modalities (Red, Green, Blue (RGB), multispectral/ hyperspectral, thermal), deep learning architectures, augmentation of data, explanation methods and IoT (Internet of Things)-edge-cloud for managing intelligent agriculture. These modern AI-based systems (AI systems) have consistently produced accurate results above 98%. However, there are problems with the generalisability (across hybrid plant species), robustness (when exposed to environmental stresses), and interpretability of the results presented to consumers. This review represents the first compilation of using imaging sensors, artificial intelligence models, Internet of Things architecture (IoT-edge), and robotics into one comprehensive framework for the detection of plant disease in the next generation. In addition, this review suggests future research directions, including lightweight edge-deployable models, multimodal sensor fusion, interpretable AI, larger validated datasets, and autonomous robotic systems for scalable and sustainable smart agriculture.
Why it matches plant phenotyping methods植物病害の画像・センサーによる検出手法を体系的にレビューしており、病害状態のフェノタイピング手法が中心です。
titleComprehensive Review of Plant Disease Detection: Advancements in Imaging Sensors, AI Techniques, and Future Directions in Smart Agriculture
Abstract In real field scenarios in agriculture, automatic segmentation of plant diseases is an important technique for precision farming. However, it remains exceptionally challenging due to blurred lesions, complex morphological structures, irregular backgrounds, and severe class imbalance. While traditional convo lutional networks struggle to capture long-range semantic context and standard vision transformers fail to preserve sharp localized boundaries, this paper proposes an efficient, attention-gated hybrid framework optimized for field deployment. Our architecture leverages a hierarchical Mix Transformer (MiT-B2) encoder stream integrated with an Atrous Spatial Pyramid Pooling (ASPP) scale-space context bridge and a custom Cross-Scale Multimodal Attention Gate (CMAG) to isolate discriminative disease markers selectively. Evaluated on the highly challenging and unbalanced PlantSeg dataset, our framework achieves competitive mean Intersection over Union (mIoU) of 66.57% and an F1-score of 79.93%, while maintaining a highly compact parameter footprint of only 30.37 M. Experimental evaluations demonstrate that the proposed system establishes a new performance milestone, outperforming current competitive architectures and proving highly viable for resource-constrained edge devices. To further enhance out-of-distribution stability, we outline future directions to extend our top-performing candidate variants into a Level 1 meta-stacking ensemble optimized via few-shot learning and partial backbone fine-tuning.
Why it matches plant phenotyping methods植物病害領域の画像セグメンテーション手法を開発・評価し、病変の分割性能を定量検証しているため、植物の病害状態を推定するフェノタイピング手法が中心です。
abstractautomatic segmentation of plant diseases is an important technique for precision farming.
To address the challenges posed by large lesion-scale variations, weak boundary cues, and high inter-class similarity in rice leaf disease detection, this study proposes an improved RT-DETRv2-R50-based rice disease detection model, termed CED-RTDETR. First, a Lightweight Contour-Guided Aggregation Backbone (LCGA-Backbone) is constructed. In the PResNet residual blocks, an InceptionDWConv2d-based direction-aware depthwise separable spatial mixing strategy is introduced to capture local, horizontal, and vertical lesion texture patterns with low computational overhead. Meanwhile, a Contour-guided Efficient Global Aggregation Block (CEGA Block) is embedded after the outputs of the C3, C4, and C5 stages. Through contour-difference enhancement, channel shuffle, group-wise efficient global aggregation, and bottleneck channel mixing, the proposed block strengthens the representation of the boundaries of small lesions, weak textures, and contextual semantics. Second, a Multi-scale Evidence Interaction Fusion Neck (MEIF-Neck) is used to perform multi-scale evidence interaction and salient-region competition after cross-scale feature concatenation. A lightweight feature reconstruction process is further implemented using Spatial-Evidence RepNCSPELAN (SE-RepNCSPELAN), which is developed from a YOLO-style feature fusion structure. Finally, a Direction-Amplitude Decoupled Deformable Attention (DAD-DA) mechanism is introduced to decompose sampling offsets into direction rotation residuals and radius gains while incorporating an aspect-ratio-aware geometric compression-restoration strategy, thereby improving the geometric stability of sampling locations during the decoding stage. Experimental results on the constructed rice leaf disease dataset show that CED-RTDETR achieves AP, AP50, and AP75 values of 29.5%, 75.2%, and 17.6%, respectively, outperforming RT-DETRv2-R50 by 4.1, 4.9, and 3.8 percentage points. To further evaluate the model on an additional public benchmark dataset, experiments were also conducted on the public Rice Disease Dataset. On this dataset, CED-RTDETR achieves AP, AP50, and AP75 values of 34.1%, 77.1%, and 23.2%, respectively, improving upon RT-DETRv2-R50 by 4.3, 5.6, and 3.4 percentage points. These results indicate that the proposed method achieves consistent overall performance improvements on both the constructed dataset and the public benchmark dataset.
Why it matches plant phenotyping methodsイネ葉の病斑・病害を画像から検出する深層学習モデルを開発し、構築データセットと公開ベンチマークで性能検証しているため、植物病害状態のフェノタイピング手法が中心です。
abstractTo address the challenges posed by large lesion-scale variations, weak boundary cues, and high inter-class similarity in rice leaf disease detection, this study proposes an improved RT-DETRv2-R50-based rice disease detection model, termed CED-RTDETR.
Plant diseases remain a threat to global agricultural productivity, food security and livelihoods, especially in developing countries where the availability of experts in agriculture is still limited. The recent progress in AI, particularly deep learning and computer vision, has ushered in new possibilities for automated plant disease diagnosis, especially for plant image-based systems. This paper provides a systematic review of the deep learning methods employed for plant disease diagnosis, highlighting CNN-based methods, the application of transfer learning, explainable AI (XAI) methods and deployment issues. In the framework of PRISMA 2020, the relevant peer reviewed literature from 2016 to 2025 was systematically identified, screened and analysed on the most important academic databases. The review compared some of the most popular architectures such as GoogLeNet, DenseNet-121, MobileNetV2, EfficientNet, Attention-CNNs and Vision Transformers. Results showed very high classification accuracy in controlled lab conditions with DenseNet-121 achieving ~99.75% accuracy with good computational efficiency. But it also revealed a big gap between the lab and the field, mainly due to environmental variations, domain shifts, and dependence on datasets. Some innovative and emerging technologies like explainable AI, hyperspectral imaging, few-shot learning, and lightweight mobile architectures showed promise of enhancing the interpretability, early detection of disease, and the use of smart phones in low-resource agricultural settings. In conclusion, the study suggests that in order to be implementable in the field, future intelligent agricultural diagnosis systems must be able to balance predictive accuracy, explainability, computational efficiency and field adaptability. The results enrich the existing knowledge on precision agriculture and serve as useful information for researchers, agricultural technologists, and policymakers working on the creation of AI-based systems for crop protection.
Why it matches plant phenotyping methods植物病害を画像から診断する深層学習手法を体系的に比較・レビューしており、植物の病徴・病害状態の推定方法が中心である。
abstractThis paper provides a systematic review of the deep learning methods employed for plant disease diagnosis
Reliable and objective phenotyping is essential for plant breeding programs to characterize genetic variation and accelerate crop improvement. Conventional disease assessment relies on expert visual scoring, which is labor-intensive, subjective, and prone to inter- and intra-rater variability. Although image-based phenotyping methods have been proposed, many require manual intervention, specialized imaging setups, or single time-point measurements, limiting their ability to capture disease progression over time. Here, we present a pipeline for longitudinal plant disease phenotyping that quantifies wheat stripe rust and leaf rust progression from time-series images. The pipeline performs semi-automated leaf and automated pustule segmentation from images acquired in situ , enabling objective disease severity estimation with minimal user intervention and without requiring solid backgrounds or manual leaf manipulation or detachment. By extracting temporal traits, including disease severity trajectories and standardized area under the disease progress curve, the method provides a comprehensive characterization of disease development throughout infection. Association between automated and expert assessments was moderate for stripe rust ( R 2 = 0.58) and strong for leaf rust ( R 2 = 0.85), while expert inter-rater reliability was moderate for both diseases (ICC = 0.675 and 0.800, respectively). The proposed approach establishes a scalable and reproducible framework for longitudinal disease phenotyping in controlled environments, with broad applications in disease resistance screening and crop breeding.
Why it matches plant phenotyping methods画像時系列から植物病害の進展と重症度を抽出する半自動・自動解析パイプラインを開発し、専門家評価との比較で検証しており、表現型取得手法が研究の中心です。
abstractHere, we present a pipeline for longitudinal plant disease phenotyping that quantifies wheat stripe rust and leaf rust progression from time-series images.
Reproduction assets foundThe paper's Code and Data Availability section explicitly states that software and datasets (the phenotyping pipeline and imaging datasets) are publicly available at the authors' GitHub repository and project website, both of which are in the allowed URL list.Code · publicSoftware and datasets are available at:
https://github.com/USask-BINFO/greenskeye_analysis and https://greenskeye.usask.ca/speedbreeding/ .Open asset ↗USask-BINFO/greenskeye_analysislines:195-225Dataset · publicSoftware and datasets are available at:
https://github.com/USask-BINFO/greenskeye_analysis and https://greenskeye.usask.ca/speedbreeding/ .Open asset ↗lines:195-225Plant phenotyping relevance match · UnverifiedOpenAlex · Crossref · checked 5 Sept 2026
Plant diseases lead to substantial yield losses and pose a persistent threat to global food security, creating an urgent demand for high-throughput, accurate, scalable, and non-destructive disease-monitoring approaches. Remote sensing has emerged as a powerful tool, yet progress in plant disease detection remains fragmented across various disciplines, tasks, sensing methods, and data modalities. This review introduces a hex-view perspective to synthesise remote-sensing-based plant disease detection within a cohesive conceptual framework. Instead of treating sensing technologies, algorithms, and datasets independently, the hex-view incorporates six interconnected dimensions that jointly capture how biological processes, the measurement scale, and data characteristics constrain disease detectability, including when detection is possible and how reliably it can be achieved. The hex-view framework comprises six interconnected dimensions and forms an integrated framework called BTSCAD: (1) Biology (B): plant–pathogen interactions constituting the biological foundation of disease development and expression. (2) Task (T): the diverse disease-detection tasks and their corresponding research objectives. (3) Sensor (S): the sensing modalities that define the data acquisition type and richness of captured information. (4) Condition (C): the environmental conditions, sensing platforms, and spatial scales that shape disease observations and bridge controlled experiments and real-world deployment across leaf, canopy, plot, and regional scales. (5) Algorithm (A): the classical and state-of-the-art data-analysis algorithms used to extract disease-related information from sensor data. (6) Dataset (D): the data sources that underpin model development, evaluation, and generalisability. The hex-view perspective provides a clear framework for interpreting previous research and identifying future research directions. This review lays a structured foundation for developing robust, interpretable, and transferable disease-detection systems, supporting advancements in precision agriculture, high-throughput phenotyping, and sustainable crop production.
Why it matches plant phenotyping methods植物病害を対象としたリモートセンシングによる病徴・病害状態の検出方法を、センサー、条件、アルゴリズム、データセットの観点から体系化する方法論レビューであり、植物フェノタイピング手法が中心です。
abstractThis review introduces a hex-view perspective to synthesise remote-sensing-based plant disease detection within a cohesive conceptual framework.
Cercospora janseana (Racib.) O. Const. is a re-emerging fungal pathogen that causes Cercospora net blotch on rice. Previous research on resistance to C. janseana has primarily focused on foliar symptoms. Subsequently, sheath infection remains poorly characterized which hinders disease management efforts. This study developed and validated a reproducible sheath inoculation protocol under controlled conditions. Three inoculation methods (agar disc, spray, and drop) were evaluated with and without mechanical wounding. Lesions only formed with inoculation methods using wounding and the agar disc method produced the most consistent and uniform symptom development. Time-course analysis in the susceptible variety Cheniere revealed earlier lesion onset, more rapid expansion, and lower variability in the agar disc method compared to spray, confirming its suitability for phenotypic screening. The optimized protocol was applied across five independent trials involving four rice varieties. DG263L consistently exhibited minimal lesion development, confirming its resistance, while Cheniere showed extensive lesion growth, indicating high susceptibility. PVL03 and LaGrue displayed moderately susceptible reactions, with PVL03 developing significantly higher lesion lengths and AUDPC values than LaGrue in one-month-old plants. Although lesion onset was delayed in 45-day-old plants, disease progressed more rapidly once established. AUDPC analysis corroborated these trends, further distinguishing varietal responses. The protocol effectively discerned resistant, intermediate, and susceptible phenotypes, supporting its use in resistance screening. To our knowledge, this is the first controlled sheath inoculation method developed for Cercospora net blotch, offering a standardized approach for evaluating sheath-specific resistance and advancing the characterization of the C. janseana -rice pathosystem.
Why it matches plant phenotyping methodsイネ葉鞘の病斑を用いた抵抗性表現型の取得プロトコルを開発・検証し、品種間の病害表現型を再現性よく識別しているため、植物フェノタイピング手法が中心である。
abstractThis study developed and validated a reproducible sheath inoculation protocol under controlled conditions.
Image-based plant disease identification is essential for advancing smart agriculture, particularly for staple crops such as rice and economically significant crops such as tea, which are cultivated under complex environmental conditions. Furthermore, these crop groups present distinct challenges: rice leaf disease data typically exhibits clear pathological structures but necessitates large-scale deployment on resource-limited devices, whereas tea leaf disease data is complicated by variable lighting, diverse backgrounds, and high biodiversity. Although current deep learning models achieve high accuracy, they predominantly utilize deep convolutional neural network (CNN) architectures with millions of parameters, which hinders practical deployment on edge devices and increases the risk of overfitting when field data is scarce. In response, this study introduces DisQuan, a hybrid architecture that integrates classical deep learning with quantum machine learning (QML) to balance accuracy and resource efficiency. In particular, DisQuan combines the lightweight DisNet feature-extraction network with a variablequantum neural network to compress and refine feature representations in quantum space, yielding a model with only 0.09 million parameters. Experimental results on rice and tea leaf disease datasets indicate that DisQuan achieves the highest accuracy on the rice dataset and performance comparable to deep CNN models with significantly more parameters on the tea dataset, while maintaining a compact and stable structure. Overall, these findings suggest that DisQuan provides a practical compromise between performance and model complexity, and highlight the potential of quantum-classical hybrid architectures for plant disease detection in real-world agricultural settings and on resource-constrained devices.
Why it matches plant phenotyping methods植物葉の病害状態を画像から識別する量子・古典ハイブリッド手法を開発し、複数データセットで性能とモデル規模を評価しており、表現型取得・推定が中心である。
abstractExperimental results on rice and tea leaf disease datasets indicate that DisQuan achieves the highest accuracy on the rice dataset and performance comparable to deep CNN models with significantly more parameters on the tea dataset
In Nigeria, maize is the most widely cultivated grain, largely supporting food security for about half of the population. Research has indicated that there is annual production is declaiming to approximately 50% in maize, this is due to crop diseases and pest damage. This research presents a deep learning surveillance system for crop disease prediction and pesticides recommendations based on a DenseNet-121 architecture for continuous video streams. The research was evaluated on a curated field dataset collected from three states in Nigeria; Adamawa, Borno, and Taraba State. The system achieved a mean accuracy of 98.2% and a mean F1-score of 0.982. The results reflect a strong discriminative capacity across the diverse textural maize diseases.
Why it matches plant phenotyping methodsトウモロコシの病害状態を映像から推定する深層学習手法の開発・評価が中心であり、植物病害表現型の画像ベース計測に該当する。農薬推薦も含むが、病害分類性能が明示的に評価されている。
abstractThis research presents a deep learning surveillance system for crop disease prediction and pesticides recommendations based on a DenseNet-121 architecture for continuous video streams.
Manual inspection of grain plant leaves for defects is subjective and labor-intensive. Few studies have compared deep learning methods on a combined multi-crop dataset. The study collected locally 5,640 leaf images from rice, maize, and guinea corn farms in Nigeria and grouped them into six classes representing defective and healthy leaves for each crop. Three models were trained: YOLOv8 for end-to-end detection and classification, EfficientNetB0 for standalone image classification, and a hybrid that used YOLOv8 for leaf detection followed by EfficientNetB0 for patch classification. The hybrid achieved 99.85% accuracy on the test set, slightly above EfficientNetB0 (99.82%) and YOLOv8 (mAP 0.995). The hybrid also supplies bounding box locations, helping farmers identify exactly where damage appears. This system offers a reliable, field-deployable tool for monitoring grain crop health.
Why it matches plant phenotyping methods穀物葉の健全・欠損状態を画像から検出・分類する深層学習システムの開発とモデル比較が中心であり、植物の病害・損傷状態を直接推定するため、植物フェノタイピング手法に該当する。
abstractManual inspection of grain plant leaves for defects is subjective and labor-intensive.
Plant phenotyping relevance match · UnverifiedbioRxiv · Europe PMC · checked 5 Sept 2026
Red crown rot of soybean (RCR), caused by Calonectria ilicicola, is an emerging soilborne disease whose quantification is challenging due to its complex symptom development across root and foliage levels. This study developed and evaluated a multi-scale framework to improve the assessment of RCR severity from controlled environments to field conditions using root imaging and standardized visual scales. Under controlled conditions, a standard area diagram (SAD) for root necrosis was developed and validated, and SAD-assisted evaluations significantly improved accuracy, precision, and inter-rater agreement compared with unaided assessments. In field conditions, a diagrammatic symptom scale (DSS) was developed using consensus-rated images from experts and showed high reliability, repeatability, and reproducibility across 18 raters, with strong intra- and inter-rater agreement. This study developed and evaluated complementary methods to improve the assessment of RCR severity from controlled environments to field conditions using root imaging and standardized visual scales.
Why it matches plant phenotyping methods根の壊死と地上部症状という植物病害状態の定量評価法を開発・検証しており、画像化と標準視覚尺度が研究の中心であるため。
abstractThis study developed and evaluated a multi-scale framework to improve the assessment of RCR severity from controlled environments to field conditions using root imaging and standardized visual scales.
Field / plotLeafSegmentationDisease symptoms / severity
Camellia oleifera leaf disease segmentation under natural field conditions is important for precision plant protection but remains challenging because lesions often show small target areas, blurred boundaries, uneven illumination, complex backgrounds, and coexisting symptoms. To address these problems, this paper proposes BFMambaNet, a Boundary-Frequency-guided Global Semantic Mamba Network for fine-grained disease segmentation. The model adopts an encoder-decoder framework and introduces a Global Semantic Mamba-based spatial selective feature modeling block to capture long-range lesion context and reduce semantic confusion. A gated wavelet spatial enhancement block is further designed to strengthen high-frequency boundary details while suppressing noisy responses. During training, boundary-frequency auxiliary supervision guides contour localization and pathological texture recovery without additional manual boundary labels. A reinforcement-learning-guided adaptive loss controller adjusts class-wise reweighting factors and loss-component weights according to the training state, improving optimization stability. A pixel-level dataset containing 1400 images and seven disease categories was constructed for evaluation. Experimental results show that BFMambaNet achieves 92.39% Precision, 91.43% Recall, 91.26% Dice, and 85.46% mIoU, outperforming representative CNN-based, Transformer-based, and Mamba-based models. Evaluations on environmental subsets confirm superior robustness, outperforming VMamba by 3.70% mIoU under uneven illumination, 3.55% mIoU under complex backgrounds, and 5.10% mIoU under coexisting symptoms. Cross-dataset validation on Apple leaf diseases further proves its generalization with 3.39% mIoU and 3.84% Dice improvements over U-Mamba, while maintaining a competitive inference speed of 30 FPS. Qualitative results also show clearer boundaries, fewer missed small lesions, and more stable predictions in complex field scenarios.
Why it matches plant phenotyping methods植物葉の病斑・病害状態を画像から画素単位で推定するセグメンテーション手法を開発し、データセット構築、性能評価、環境別評価、クロスデータセット検証まで行っており、病害フェノタイピング手法が中心である。
abstractA pixel-level dataset containing 1400 images and seven disease categories was constructed for evaluation.
Introduction Applying general-purpose vision-language models (VLMs) to crop disease diagnosis presents three critical bottlenecks: reliance on large-scale annotated data, the high computational cost of full finetuning, and existing adaptation methods designed mainly for discriminative classification without sufficient visual-linguistic interaction for generative diagnosis. Methods We propose BLAP, an adaptive multi-scale visual prompt fine-tuning framework built upon BLIP-2. BLAP introduces an adaptive visual prompt fusion module (APFM) with learnable prompt vectors and a gating mechanism, together with a multi-scale pyramid feature fusion module (PFM). All BLIP-2 backbone parameters are frozen, and only 0.11% of the model parameters are optimized. Results On a few-shot dataset comprising 990 images from 11 crops and 33 disease categories, BLAP achieved 92.78% recognition accuracy, outperforming the BLIP-2+LoRA baseline by 21.67 percentage points. BLEU-4 and ROUGE-L scores reached 0.6507 and 0.7184, respectively, while inference latency increased by only 2.15%. Discussion BLAP provides a lightweight solution that balances accuracy, efficiency, and interpretability for crop disease diagnosis in resource-constrained settings. The proposed dynamic prompt fusion and multiscale pyramid adaptation strategy may also be extended to parameter-efficient fine-tuning of visionlanguage models in other domain-specific applications.
Why it matches plant phenotyping methods作物病害画像から病徴・病害状態を推定する視覚モデル適応手法BLAPの開発と評価が中心であり、植物病害フェノタイピング手法に該当する。
abstractWe propose BLAP, an adaptive multi-scale visual prompt fine-tuning framework built upon BLIP-2.
Reproduction assets foundThe paper's few-shot crop disease dataset (990 images, 11 crops, 33 classes) is compiled entirely from four public Mendeley Data image repositories, each cited in Table 1 as the data source for specific crop/disease classes. These are the plant image inputs directly used for this paper's phenotyping/analysis. No authorDataset · publicncluding laboratory and field environments (Approximately 45% of them were captured in field environments), to enhance sample representativeness and model robustness.
Table 1
The number of collected diseases or healthy image data for each crop.
Crop
Disease
No. of images
Collection conditions
Data source
Apple
Apple scab
30
Lab
https://data.mendeley.com/datasets/tywbtsjrjv/1
Cedar apple rust
30
Lab
https://data.mendeley.com/datasets/tywbtsjrjv/1
Healthy
30
Lab
https://data.mendeley.com/datasets/tywbtsjrjv/1
Cashew
Healthy
30
Lab
https://data.mendeley.com/datasets/8fr7grr73p/1
Leaf miner
30
Lab
https://data.mendeley.com/datasets/8fr7grr73p/1
Red rust
30
Lab
https://data.mendeley.com/datasets/Open asset ↗lines:37-116Plant phenotyping relevance match · UnverifiedEurope PMC · checked 15 Sept 2026
Why it matches plant phenotyping methodsブドウ葉ディスク上のべと病症状を画像から自動分割し、病害重症度を推定する手法を開発・検証しており、植物表現型取得が中心である。
abstractWe developed SporaScan, an automated pipeline combining YOLO v8n for leaf disc localization, Mobile SAM for background removal, and UNet for sporulation segmentation.
Abstract The classification of banana leaf disease has a large impact on agricultural output and relies heavily on timely early detection, with reliability as a fundamental component of effective crop management. The framework proposed in this study comprises a Hamiltonian Full Node Coverage Graph Attention Network (HFNC-GAT) and Fuzzy C-Means super pixel graph learning to explain the classification of banana leaf diseases. The HFNC-GAT allows for the representation of segmented leaf areas as the nodes in a graph. This framework also makes optimal use of an attention learning model to represent the spatial dependence of diseased leaf regions, allowing it to leverage both local and global spatial dependencies. The HFNC-GAT was demonstrated through observed experiments to achieve high performance with 96.11 and 94.19 accuracy, 0.9111 Cohen's Kappa, 0.9111 MCC, 0.9344 F2-score, and 0.9939 ROC-AUC compared to the performance of conventional CNN, GCN, and baseline GAT models.
Why it matches plant phenotyping methodsバナナ葉の病斑領域を画像から抽出・分類するグラフ学習手法が研究の中心であり、植物の病害状態を直接推定するため、植物フェノタイピング手法として適格です。
abstractThe framework proposed in this study comprises a Hamiltonian Full Node Coverage Graph Attention Network (HFNC-GAT) and Fuzzy C-Means super pixel graph learning to explain the classification of banana leaf diseases.
Reproduction assets foundThe paper's Dataset Availability statement explicitly declares two public Kaggle banana leaf image datasets used for the phenotyping/classification experiments: Banana Leaf Disease Dataset V4 and BananaLSD. No author analysis code or trained model is reported as publicly available.Dataset · publicThe Banana Leaf Disease
Dataset V4 is available at https://www.kaggle.com/datasets/rayhanarlistya/banana-leaf-disease-dataset-v4.Open asset ↗Kaggle · banana-leaf-disease-dataset-v4pdf-page:19 lines:1-55Dataset · publicThe Banana Leaf Spot Diseases (BananaLSD) dataset is available at
https://www.kaggle.com/datasets/shifatearman/bananalsdOpen asset ↗Kaggle · bananalsdpdf-page:19 lines:1-55Plant phenotyping relevance match · UnverifiedCrossref · checked 11 Sept 2026
Rice leaf diseases significantly affect crop health and yield potential, creating a need for accurate and timely disease diagnosis. Many existing approaches still rely on single-stream feature extraction architectures, which may limit the ability to simultaneously capture global contextual information and fine-grained disease characteristics. Moreover, limited interpretability and decision-support capability hinder their practical deployment in real-world rice farming. To address these limitations, we employed a framework consists of two parallel feature extraction streams designed to capture different characteristics of disease patterns. The first stream uses a Swin Transformer to learn global contextual information and long-range spatial relationships across the leaf image. The second stream employs ConvNeXt to extract local texture features, including lesion details, spots, and color variations. By combining these complementary representations, the proposed framework effectively integrates global semantic information with local disease-specific features for improved classification performance. The extracted features from the two streams are fused through concatenation followed by an attention-based feature refinement module, enabling adaptive weighting of discriminative features. The refined representation is then used by a fully connected classifier for disease prediction. To enhance model interpretability, Grad-CAM visualization is incorporated to highlight disease-relevant regions and provide visual explanations for the model decisions. Furthermore, an LLM-based advisory module is integrated as a post-diagnosis decision-support component to provide contextualized disease management information and suggestions based on the predicted disease category. The generated suggestions are intended to support, rather than replace, expert agronomic recommendations and should be validated by agricultural professionals before practical application. The proposed framework was evaluated on two rice leaf disease datasets, achieving accuracies of 99.55% and 97.06% on Dataset-1 and Dataset-2, respectively, which are higher than those reported in previous studies. Additionally, five-fold cross-validation on Dataset-1 achieved an average accuracy of 98.91% ± 0.47, demonstrating the stability of the proposed approach. Cross-dataset evaluation using nine common disease classes across both datasets achieved 90.80% accuracy, indicating improved generalization across different data distributions. The proposed framework provides an accurate and explainable approach for rice leaf disease diagnosis in smart agriculture applications.
Why it matches plant phenotyping methodsイネ葉画像から病害状態を推定する二流路深層学習手法を開発・評価しており、植物病害表現型の取得・分類が中心である。
titleGlobal-Local Feature-Based Rice Leaf Disease Classification Using Two-Stream Deep Neural Network Feature Fusion
This paper explores how deep learning methods can be used to monitor the health of crops and identify diseases, particularly for the apple crop. As the need for food security and sustainable farming methods increases, there is a strong demand for early detection of crop diseases. We have used a Convolutional Neural Network (CNN), based on the model of VGG16 architecture, since the model is known to be effective in image classification. The dataset contained 7771 training images for to enhance machines deep learning regarding plant diseases. Following that, validation image collection of 1747 images divided into four health conditions of the apple crops. In addition, the model was evaluated using 196 new images as a final test. To enhance the model capacity for recognizing diseases of real leaves rather than just memorize exact training pictures, data augmentation was used with ImageDataGenerator of TensorFlow. This means the training images were zoomed, rotated, and shifted to enable the machine detects more variations. Ten epochs of training were performed to measure the model accuracy. The results indicated that the model obtained significant improvement in training and validation accuracy from 56.43% to 78.12% and 92.94 to 96.93%, respectively. Most impressively, the final test dataset, which contained completely new images, scored an accuracy rate of 98%. The results indicate that in the architecture field the application of deep learning methodologies is effective, suggesting that automated detection of diseases by using sophisticated image analysis manages crop diseases identification efficiently. Combination of these methods successfully creates avenues for novel research to built real-time systems of crop disease monitoring, which help farmers increase their productions and farm their lands sustainably.
Why it matches plant phenotyping methodsリンゴ葉の画像から病害・健全状態をCNNで推定する画像ベース植物フェノタイピング手法であり、学習・検証・未知画像で性能評価を行っているため含める。
abstractWe have used a Convolutional Neural Network (CNN), based on the model of VGG16 architecture, since the model is known to be effective in image classification.
This study evaluated the effects of input-channel composition and the incorporation of attention modules on the detection accuracy of visually suspected pine wilt disease (PWD)-affected trees using unmanned aerial vehicle (UAV) RGB orthomosaic imagery and the YOLO26-Large (YOLO26-L) deep learning model.Four datasets were constructed: Dataset A, consisting of three RGB channels; Dataset B, combining RGB with elevation and aspect (5 channels); Dataset C, combining RGB with three graylevel co-occurrence matrix (GLCM) texture features, namely Angular Second Mement (ASM), Entropy, and Homogeneity (6 channels); and Dataset D, combining RGB with the GLCM texture features and topographic information, namely elevation and aspect (8 channels).The Squeeze-and-Excitation (SE) block and Convolutional Block Attention Module (CBAM) were independently integrated into the YOLO26-L baseline model, and the detection performance of the 12 combinations was analyzed.In the accuracy assessment, the YOLO26-L baseline model trained with Dataset B achieved the highest mean Average Precision (mAP)@50 of 0.63 among the 12 combinations.However, the differences among the 12 combinations were marginal and did not indicate the superiority of a specific combination.Dataset C and Dataset D, which incorporated GLCM texture features, achieved accuracy levels similar to those of Dataset A, which used RGB alone, indicating that GLCM texture features did not substantially improve the detection of PWD-affected trees in 5-cm-resolution imagery.The application of attention modules also did not lead to a consistent improvement in accuracy, and the detection rates of all 12 combinations remained around 60% for objects smaller than 25 m².These results suggest that simply adding texture features or attention modules did not reliably improve detection accuracy.This study extends RGB-based UAV detection of PWD-affected trees by progressively integrating elevation, aspect, and GLCM texture features into four datasets and evaluating their interactions with SE and CBAM attention modules across a 12-combination experimental matrix.The results can inform the selection of input channels and model architectures in future forest disease detection studies.
Why it matches plant phenotyping methodsUAV画像と深層学習モデルを用いてマツ材線虫病罹病木の検出精度、入力特徴、注意機構を比較評価しており、植物の病害状態を推定する方法の技術的検証が中心である。
abstractThis study evaluated the effects of input-channel composition and the incorporation of attention modules on the detection accuracy of visually suspected pine wilt disease (PWD)-affected trees using unmanned aerial vehicle (UAV) RGB orthomosaic imagery and the YOLO26-Large (YOLO26-L) deep learning model.
O cultivo de maçãs tem grande importância econômica no setor agropecuário brasileiro, especialmente na região Sul do país. No entanto, a produtividade dos pomares é frequentemente comprometida por doenças foliares que, se não tratadas, podem resultar em perdas substanciais. Nesse contexto, os avanços em técnicas de Aprendizado de Máquina têm possibilitado o desenvolvimento de soluções computacionais que auxiliam no diagnóstico agropecuário com maior precisão e agilidade. Este trabalho propõe uma abordagem baseada em Redes Neurais Convolucionais que utiliza aprendizado por transferência para detectar automaticamente sintomas de doenças em folhas de macieira. A metodologia desenvolvida inclui a segmentação e análise de regiões sintomáticas para reduzir o ruído proveniente de áreas saudáveis e direcionar o aprendizado do modelo para sinais relevantes. Um total de 32.382 manchas de sintomas foram extraídas de 1.995 imagens originais, abrangendo cinco classes de distúrbios foliares: glomerela, sarna, danos por herbicidas, deficiência de magnésio e deficiência de potássio. A rede MobileNetV2, treinada por meio de aprendizado por transferência, alcançou um F1-score de 0,926 e 93,8% de acurácia no conjunto de teste reservado. Os resultados indicam um bom desempenho no contexto avaliado, sugerindo o potencial da abordagem como ferramenta de apoio ao diagnóstico da saúde das plantas e à tomada de decisões em campo. Palavras-chave: aprendizado de máquina; visão computacional; doenças em plantas. Application of convolutional neural networks for disease detection in apple tree leaves ABSTRACT: Apple cultivation holds significant economic importance in the Brazilian agricultural sector, especially in the southern region of the country. However, orchard productivity is often compromised by foliar diseases, which, if left untreated, can lead to substantial losses. In this context, advances in Machine Learning techniques have enabled the development of computational solutions that support agricultural diagnostics with greater accuracy and agility. This work proposes an approach based on Convolutional Neural Networks that uses transfer learning to automatically detect disease symptoms in apple leaves. The developed methodology includes segmentation and analysis of symptomatic regions to reduce noise from healthy areas and focus the model’s learning on relevant signals. A total of 32,382 symptom patches were extracted from 1,995 original images, covering five foliar disorder classes: glomerella, scab, herbicide damage, magnesium deficiency, and potassium deficiency. The MobileNetV2, trained via transfer learning, achieved a F1-score of 0.926 and 93.8% accuracy on the held-out test set. The results indicate good performance in the evaluated setting, suggesting the approach’s potential as a tool to support plant-health diagnosis and field decision-making. Keywords: machine learning; computer vision; plant disease.
Why it matches plant phenotyping methods葉の病徴を画像から自動検出・分類するCNNと、症状領域のセグメンテーションを中心的に開発・評価しており、植物病害状態の画像ベース表現型計測に該当する。
abstractEste trabalho propõe uma abordagem baseada em Redes Neurais Convolucionais que utiliza aprendizado por transferência para detectar automaticamente sintomas de doenças em folhas de macieira.
Sustainable wheat farming is challenging. Real-time information on crop health, disease transmission, and anticipated yields is essential for farmers. However, they frequently use slow, expensive, or non-communicative tools. This project develops a workable solution. There is no need for massive server farms because the entire system operates on a single graphics card. It incorporates images of wheat fields, Indian farming notes, greenhouse records, harvest statistics, and NASA meteorological data. Consider them as various “eyes” for crop photo analysis, and we tried several lightweight computer vision models. ConvNeXt-Tiny was slower but could operate on older equipment with 75% accuracy; EfficientNetB0 recognised wheat heads with 92% accuracy; and AgroMark, a hybrid solution that merged photo analysis with agricultural metadata (soil type, rainfall, increased to 87%, etc. Combining picture analysis with attention mechanisms (CBAM) allowed us to anticipate the amount of wheat that a field will yield based on these photo insights, and the results showed that our predictions were accurate, with an R 2 score of 0.97. Additionally, we developed a versatile detector that simultaneously detects disease, stress, head count, and pests. It is adjusted to deal with training data that is unbalanced (some diseases are common, while others are rare). As we packed everything into a 16-GB graphics card, we spent real time determining which strategies smaller training sets, removing weak features, and adjusting loss functions, work. We encounter real-world obstacles along the road, such as photographs from different locations not always match, mislabeled photographs from different locations not always match, mislabeled diseases, and neglected rare pests. Our step-by-step instructions, charts, and code are available.
Why it matches plant phenotyping methods小麦画像から病害・ストレス・穂数・収量などの植物形質・状態を推定するマルチモーダル手法を開発し、複数モデルの精度比較と実装上の検証を行っており、表現型取得・推定が研究の中心である。
abstractThis project develops a workable solution.
Reproduction assets foundThe paper builds its multimodal wheat phenotyping analysis on several explicitly cited public data assets: the Kaggle Wheat Plant Diseases image dataset (used for disease classification, Tables 2 and 9), the Global Wheat Head Detection dataset (used for head detection, Tables 1 and 6), FAOSTAT and India Open GovernmentDataset · publicAvailable online at: https://www.fao.org/faostat/ . FAOSTAT statistical database.Open asset ↗lines:1110-1162Code / dataset availability confirmedEurope PMC · checked 14 Sept 2026
Abstract Sustainable agriculture has substantial share on improvement of food security and optimization of resources utilization particularly for high value crops like rice leaf. Rice varieties should be properly classified in order to benefit the harvest management, reduced loss after harvest and improved agriculture methods. The traditional classification method usually brings the low precision and the traditional classification method is also subjected to human error, which is difficult to bring about reliable output. This study introduces an optimized multi-class rice leaf disease classification system utilizing “Rice Feature Selection” (RiceFS) and ensemble machine learning approaches. RiceFS is realized based on a feature selection mechanism based on Recursive Feature Elimination. Selected classifiers such as KNN, Random Forest, Gradient Boosting, Ensemble Learning and Optimized SVM are analyzed based on the extracted subset of features and the proposed system is used to classify the seven classes of rice leaf disease. The experimental results show that the Optimized SVM has the best classification results among the different classifiers with accuracy of 92.10%, Precision of 92.20%, balanced Recall and F1 Score, which shows that Optimized SVM is very effective in multi-class rice leaf disease classification. The performance can be improved by feature reduction, generalization capability and computational complexity reduction, which are realized with the help of RiceFS. The proposed framework is designed to provide an intelligent decision support system for timely intervention, loss minimization and sustainable agriculture. Results indicate that these algorithms are applicable for rice leaf disease classification since they are accurate, reliable and scalable.
Why it matches plant phenotyping methodsイネ葉の病害状態を観察データから分類する計算手法が研究の中心であり、RiceFSと複数の機械学習器を用いた分類フレームワークを開発・評価しているため。
abstractThis study introduces an optimized multi-class rice leaf disease classification system utilizing “Rice Feature Selection” (RiceFS) and ensemble machine learning approaches.
Reproduction assets foundThe paper's RiceFS phenotyping/classification experiments are built on two public Kaggle rice leaf disease image datasets, explicitly cited with URLs and a data availability statement. No author code or models are deposited.Dataset · publicThe RiceFS framework proposed initially
performs a feature selection, followed by training
several classifiers: K-Nearest Neighbors (KNN),
Random Forest (RF), Gradient Boosting (GB),
Ensemble Learning, and Optimized Support
Vector Machine (Optimized SVM). The data is
published on the Kaggle website. The data is
open-source at:
https://www.kaggle.com/datasets/vbookshelf/rice-leaf-diseases [44].
This data consists of 120 jpgs of disease infected
rice leaves. The photos are divided into 3
categories according to the kind of disease. There
are 40 images in each class.
Classes
• Leaf smut
• Brown spot
• Bacterial leaf blight
The datasets are preprocessed by eliminating
redundant information, normOpen asset ↗Kaggle · vbookshelf/rice-leaf-diseasespdf-raw-page:11 lines:1-103Code / dataset availability confirmedCrossref · checked 14 Sept 2026
Published11 Aug 2026Engineering, Technology & Applied Science ResearchCited by 0 · OpenAlex ↗
Corn is a staple crop of global significance; however, foliar diseases may lead to 30–60% yield loss if not detected at an early stage. Conventional visual inspection is time-consuming, subjective, and difficult to scale for smallholder farmers worldwide. To overcome these issues, we present Corn Transfer Learning Network (CTL-Net), an end-to-end hybrid deep learning model for corn leaf disease identification. CTL-Net, which combines Inception-ResNet-v2 as the backbone and MobileNetV3 as a feature extractor in parallel convolutional streams, simultaneously learns diverse scales of texture information from low-level textures, mid-level structural patterns, and high-level disease semantics of RGB leaf images. Adaptive feature fusion is formulated through learnable weighting coefficients and bi-directional spatial–channel attention mechanisms, which further enhance feature discriminability and robustness. The proposed approach is tested on an extensive dataset of 12,456 images from 10 corn diseases, including Northern Leaf Blight, Common Rust, Gray Leaf Spot, and Cercospora Leaf Spot, acquired under controlled and real-field conditions. CTL-Net attains the highest classification accuracy of 99.42%, outperforming DenseNet121 (97.92%), EfficientNetB3 (97.35%), and general stacking models (97.89%). Robustness experiments demonstrate the effectiveness of the proposed method against illumination variations, additive noise, and partial occlusions. CTL-Net enables real-time inference with a latency of 42 ms on an NVIDIA RTX 3090 GPU. Gradient-weighted Class Activation Mapping++ (Grad-CAM++)-based interpretability analysis results in a mean Intersection over Union (IoU) of 87.6% with expert-annotated disease regions. Five-fold cross-validation, ablation studies, and statistical significance testing (p
Why it matches plant phenotyping methodsトウモロコシ葉画像から病徴・病害状態を推定する深層学習手法を開発し、複数モデルとの比較、頑健性評価、交差検証、アブレーションを行っており、植物フェノタイピング手法が中心である。
abstractwe present Corn Transfer Learning Network (CTL-Net), an end-to-end hybrid deep learning model for corn leaf disease identification.
Reproduction assets foundThe paper states its final curated corn leaf disease dataset (12,456 images, 10 classes) is publicly available via the authors' GitHub repository vishruthkp/maizedataset (reference [30] and Data Availability statement). The Kaggle PlantVillage and Corn or Maize Leaf Disease datasets are cited source inputs, not paper-Dataset · public"Prediction of Crop Yield using Machine Learning," International Available: https://github.com/vishruthkp/maizedataset.Open asset ↗vishruthkp/maizedatasetpdf-page:7 lines:1-53Code / dataset availability confirmedEurope PMC · checked 5 Sept 2026
Field / plotLeafClassificationStress / disease detectionDisease symptoms / severity
Automated plant disease recognition from field photographs remains challenging: models trained on laboratory datasets collapse on in-the-wild images, and the current state of the art on PlantWild-the largest open in-the-wild benchmark (18,542 images, 89 classes)-relies on text prototypes derived from a language model to reach 76.18% top 1 accuracy. We ask whether text supervision is truly necessary or whether the bottleneck is the diversity of the visual representation. Our central methodological finding is that backbone selection and fusion matter far more than classifier-head engineering : across 118 experiments, a simple fixed-weight linear-prototype combination on top of three complementary frozen backbones yields larger and more reproducible gains than any head-level adaptive routing mechanism we test. Specifically, through a systematic study of six frozen vision backbones (three CLIP, two DINOv3, and one DINOv2), three classifier heads, and four fusion configurations, completed in a single day on one consumer GPU, we establish three findings. (i) A single self-supervised backbone (DINOv2 ViT-L/14) already surpasses text-augmented MVPDR (77.56% vs. 76.18%). (ii) Concatenating three complementary backbones (DINOv2 + DINOv3 + CLIP) reaches 80.23% ± 0.41% (five seeds), exceeding the published MVPDR accuracy by +4.05 points and our own reproduction of MVPDR under an identical evaluation protocol by +7.96 points, without any language supervision. (The difference between the two deltas reflects evaluation-protocol differences-our split, model-selection criterion, and training schedule-rather than any discrepancy in the reported numbers; see Section 4.6.6 for a full reconciliation.) (iii) Every form of learned routing we test-per-class gating, backbone gating, sample-wise gating-is inessential; the gain is entirely attributable to backbone diversity and a simple linear-prototype scoring combination. On the smaller PlantDoc benchmark, the same principle transfers but with substantially higher seed variance: the best configuration reaches 80.09% at a favourable seed but 76.97% ± 1.48% over five seeds-a suggestive rather than robust gain. Beyond the accuracy headline, we provide a pathology-aware per-class analysis showing that DINOv2/v3 dominate on fine-texture lesion classes (rusts, mildews, and leaf spots) whilst CLIP's narrow advantage concentrates on organ/species-level identification (rice leaf and potato late blight). All primary claims are validated over five seeds, and all code, feature caches, and result files are released for full reproducibility.
Why it matches plant phenotyping methods植物病害の画像認識を対象に、複数の視覚基盤モデル融合と分類器を体系比較・検証しており、病害状態の推定手法が研究の中心である。
abstractOur central methodological finding is that backbone selection and fusion matter far more than classifier-head engineering
Reproduction assets foundThe paper states that its code, cached features, and result files will be released, but no authors' public URL or repository is provided in the supplied blocks (future-tense availability language only). The DINOv3 GitHub link and OpenReview link are third-party backbone resources, not paper-specific assets.Code · publicAll primary claims are validated over five seeds, and all code, feature caches, and result files are released for full reproducibility.Open asset ↗lines:332-335Code / dataset availability confirmedCrossref · checked 14 Sept 2026
Published11 Aug 2026Engineering, Technology & Applied Science ResearchCited by 0 · OpenAlex ↗
In recent years, areca nut plants have been vulnerable to different diseases that appear as distinct colors on leaves, caused by bacteria or fungi. These symptoms disrupt photosynthesis and reduce yield, affecting productivity and crop health. Therefore, accurate plant disease classification is essential for detecting distinct disease shapes and sizes. Existing Deep Learning (DL) models have several limitations that prevent them from distinguishing between various plant diseases due to similar characteristics. To overcome this limitation, a Dynamic elastic boundary strategy Sailfish Optimization Algorithm and Convolution Neural Network (DSFO-CNN) method is proposed to identify and accurately classify arecanut plant diseases. The Visual Geometry Graph-19 (VGG-19) model extracts features that have significant information about disease in arecanut plants. The proposed arecanut plant disease classification model employed feature selection and drop cyclic learning rate, which adjusts the CNN learning rate to efficiently learn the subtle information about various leaf and nut diseases to enhance classification. The experimental results of the DSFO-CNN demonstrate superior performance compared to existing approaches.
Why it matches plant phenotyping methodsアレカヤシの葉・果実に現れる病徴を画像から分類するCNNベース手法を提案・評価しており、植物病害状態の取得・推定が中心的な方法論的貢献である。
abstractTherefore, accurate plant disease classification is essential for detecting distinct disease shapes and sizes.
Reproduction assets foundThe paper's phenotyping inputs are two public image datasets: the collected Arecanut dataset (Kaggle) and the PlantVillage dataset (Kaggle), both explicitly cited and declared openly available. No author analysis code or trained model is released.Dataset · publicDATA AVAILABILITY
The data used in this study are openly available at [19] and
[20].Open asset ↗pdf-page:7 lines:1-63Plant phenotyping relevance match · UnverifiedCrossref · Europe PMC · checked 15 Sept 2026
Accurate crop disease diagnosis is critical for agricultural productivity and food security, yet existing deep learning systems often struggle to generalize across visually similar diseases and varying environmental conditions. Recent Vision-Language Models (VLMs) have demonstrated promising zero-shot reasoning capabilities; however, most agricultural diagnostic systems still rely on isolated single-model predictions without collaborative reasoning or consensus mechanisms. In this work, we propose VIDA+PANDA, a multi-agent Vision-Language framework for zero-shot crop disease diagnosis. The framework consists of two stages: VIDA, where multiple VLM agents independently analyze crop leaf images to establish baseline performance, and the Peer-Anchored Named Deliberation Architecture (PANDA), which introduces a structured multi-round debate among a selected group of high-performing and architecturally diverse agents. During deliberation, agents exchange reasoning, critique peer predictions, and revise decisions through evidence-grounded discussion, while an anti-sycophancy mechanism discourages unsupported consensus shifts. Final predictions are generated through performance-weighted consensus voting. Experiments are conducted on the CDDM benchmark using seven heterogeneous VLMs from four independent providers, including two open-source models, under a fully zero-shot setting. A non-participant GPT-5 model serves as an independent judge to assess the final diagnostic predictions. Beyond conventional accuracy, the framework introduces three semantic measures: Semantic Label Similarity (SLS), which measures how semantically close a predicted crop-disease pair is to the ground truth and captures partial correctness overlooked by exact-match evaluation; Reasoning Specificity (RS), which measures how concretely an agent’s explanation references visual evidence such as lesion color, shape, texture, or margins; and Inter-Agent Reasoning Convergence (IRC), which measures the extent to which agents rely on similar visual evidence, capturing epistemic alignment independently of label correctness. Experimental results show that collaborative multiagent deliberation improves individual diagnostic performance and semantic alignment, with the largest gains observed among weaker participating agents. The findings also reveal important relationships between predictive accuracy, persuasive influence, and consensus formation in VLM-based agricultural diagnosis.
Why it matches plant phenotyping methods葉画像から植物病害状態を推定するマルチエージェント画像・言語フレームワークを開発し、ベンチマークで性能評価しており、病害表現型の取得・推定手法が中心である。
abstractwe propose VIDA+PANDA, a multi-agent Vision-Language framework for zero-shot crop disease diagnosis.
Common beanLeafClassificationDisease symptoms / severity
Abstract Accurate recognition of plant leaf diseases from images is essential for intelligent agriculture and precision crop protection. However, reliable disease identification remains challenging because lesion regions often exhibit subtle visual differences, complex backgrounds, and large intraclass variations, especially when available disease samples are limited. To address these challenges, this study proposes PR-CNN, a deep learning framework that integrates convolutional neural networks, pyramid split attention, and a relation network for bean leaf disease image recognition. The convolutional backbone is first used to extract visual features from support and query images. Then, the pyramid split attention module enhances multiscale spatial and channel feature representation, enabling the model to focus on discriminative lesion regions while suppressing redundant background information. Finally, the relation network learns a nonlinear similarity metric between paired samples and generates relation scores for disease category prediction. Experimental results show that PR-CNN achieves an overall classification accuracy of 99.24% on the primary bean leaf disease dataset, outperforming representative models, including ResNet50, DenseNet, Inception v4, and EfficientNet B7, in terms of recognition accuracy and adaptability. In addition, PR-CNN was evaluated on four publicly available plant disease datasets, including CGIAR, Plant Diseases, LWDCD 2020, and Plant Pathology, achieving an average accuracy of 99.84%. These results demonstrate that PR-CNN can effectively improve image based plant disease recognition and provides a robust visual classification framework for intelligent crop disease diagnosis.
Why it matches plant phenotyping methods豆葉画像から病徴・病害を認識する深層学習手法を開発し、複数データセットで性能検証しており、植物の病害状態の画像ベース計測が研究の中心である。
abstractthis study proposes PR-CNN, a deep learning framework that integrates convolutional neural networks, pyramid split attention, and a relation network for bean leaf disease image recognition.
Citrus Huanglongbing (HLB) is one of the most destructive citrus diseases worldwide, and early diagnosis remains challenging because uneven pathogen distribution often leads to false-negative PCR results. Here, a paper-based nanozyme sensor array was developed for volatile organic compound (VOC) chemical fingerprinting of HLB-associated citrus samples. Fe/Al bimetallic NH₂-MIL-53 nanozymes were designed to regulate VOC adsorption and peroxidase-like catalytic activity. Exposure of the nanozyme sensors to VOCs reduced the catalytic oxidation of 3,3',5,5'-tetramethylbenzidine (TMB), generating concentration-dependent colorimetric responses. By tuning the Fe/Al ratio, the nanozymes exhibited differentiated responses toward HLB-associated volatiles, including methyl salicylate, phenylacetaldehyde, and linalool, with recognition limits of 0.1-0.5 ppm. Integration with two MOF-based sensing channels formed a five-channel artificial olfactory array capable of generating multidimensional color fingerprints. The sensor array successfully discriminated healthy, asymptomatic, and infected citrus leaf samples, achieving an overall classification accuracy of 92.5%. These results suggest that the proposed platform provides a simple and low-cost approach for citrus VOC chemical fingerprinting and may provide useful information for quality-related screening in citrus production systems, while further field-oriented validation is still needed to assess its practical applicability.
Why it matches plant phenotyping methods柑橘葉のHLB感染状態をVOCセンサーアレイで識別する計測・解析法の開発が研究の中心であり、植物病害状態を直接推定している。
abstractHere, a paper-based nanozyme sensor array was developed for volatile organic compound (VOC) chemical fingerprinting of HLB-associated citrus samples.
Abstract Crop diseases pose significant challenges to productivity in resource-constrained settings, often remaining undiagnosed when diagnostic tools and infrastructure are either non-existent or inadequate. Current crop disease diagnosis relies on manual inspection methods that are labor-intensive, prone to error, and incapable of delivering real-time or region-specific insights in the process. Such limitations call for developing advanced diagnostic systems that are scalable and efficient in resource-constrained settings. This research introduced a comprehensive multi-spectral imaging and machine learning framework that can easily revolutionize the disease diagnosis and management inside the low-resource farming communities. Built within its core is the 3D Spectral-Spatial Convolutional Neural Network (3D SSCNN) that extracts high-resolution spectral-spatial features from hyperspectral image cubes. The accuracy achieved is around ~ 95% within 0.3 s per sample. Fed-DiagNet has provided support for distributed training that enables scalability and also data privacy to enhance the accuracy of regional models at approximately 92% as well as reduces training by almost 40%. Temporal disease progression modeling is enabled by Temporal Progression LSTM that provides dynamic trends with 90% accuracy up to a horizon of 10 days. This means that in addition to integrating disparate data sources-including hyperspectral imagery, environmental data, and pest observations-MTAN achieves an almost ~ 93% stress identification accuracy. Lastly, an RL-FO system tailors its treatment recommendations to local conditions so as to optimize for yield improvement and cost-effectiveness. With the proposed system, diagnostic precision increases to ~ 94%, and it is manifested in real-time efficiency while supporting scalability with actionable insights to empower farmers to mitigate crop losses and augment food security across several scenarios.
Why it matches plant phenotyping methods植物病害の状態をマルチスペクトル画像から推定する画像・機械学習フレームワークの開発が研究の中心であり、植物フェノタイピング手法に該当する。
abstractThis research introduced a comprehensive multi-spectral imaging and machine learning framework that can easily revolutionize the disease diagnosis and management inside the low-resource farming communities.
Reproduction assets foundThe paper's Data Availability statement points to two public repositories containing the data analyzed: a Kaggle PlantVillage dataset and a GitHub hyperspectral datasets repository. No author code or models are explicitly deposited.Dataset · publicAll data analyzed during this study are available in the Kaggle and Github repository, in the links https://www.kaggle.com/datasets/rohithaaiswarya/plant-village and https://github.com/antmedellin/HyperspectralDatasets .Open asset ↗Kaggle · rohithaaiswarya/plant-villagelines:563-583Dataset · publicAll data analyzed during this study are available in the Kaggle and Github repository, in the links https://www.kaggle.com/datasets/rohithaaiswarya/plant-village and https://github.com/antmedellin/HyperspectralDatasets .Open asset ↗GitHub · antmedellin/HyperspectralDatasetslines:563-583Plant phenotyping relevance match · UnverifiedCrossref · checked 15 Sept 2026
Background: Plant diseases significantly threaten global food security, reducing potential harvests and sometimes causing total crop failure. Traditional detection methods, which rely on manual inspection and laboratory testing, are time-consuming, costly and prone to human error. Methods: To address these challenges, this study applies transfer learning techniques using deep convolutional neural networks for accurate and efficient plant disease detection. A comparative analysis of nine pretrained models, VGG16, VGG19, ResNet50, ResNet101V2, MobileNetV2, InceptionV3, DenseNet121, InceptionResNetV2 and Xception was conducted on the PlantVillage dataset, focusing on apple, potato and peach leaf images. Result: Results show that DenseNet121 and ResNet101V2 achieved the highest accuracy, particularly for potato leaves with 98.5%, while MobileNetV2 also performed well with up to 99% accuracy for apple and peach leaves. The study demonstrates that transfer learning effectively enhances plant disease classification, enabling faster, more reliable and resource efficient detection for precision agriculture.
Why it matches plant phenotyping methods植物葉画像から病害状態を推定する深層学習手法を比較評価しており、病害表現型の取得・分類が研究の中心である。
abstractthis study applies transfer learning techniques using deep convolutional neural networks for accurate and efficient plant disease detection.
Existing plant-disease datasets target classification and detection, leaving vision-language models unable to support interactive, reasoning-based diagnosis. To address this, we present PlantExpertVQA, a large-scale visual question answering (VQA) dataset designed to advance vision-language models for agricultural decision-making. It is compiled from 45 open-source datasets, including the widely used PlantVillage corpus, and comprises 765,186 high-quality question-answer (QA) pairs grounded over 150,841 images spanning 38 crop species and 89 disease conditions. Questions are organized into 3 levels of cognitive complexity and 9 distinct categories. Each was phrased following expert guidance and generated via an automated two-stage pipeline: template-based QA synthesis from image metadata, followed by multi-stage linguistic re-engineering. The dataset was iteratively reviewed by domain experts for scientific accuracy and relevance. We find that current frontier vision-language models, including recent open-source instruction-tuned multimodal LLMs, perform poorly on PlantExpertVQA. However, parameter-efficient fine-tuning of a compact 2B-parameter model on a small fraction of the dataset yields substantial improvements across all question categories, demonstrating its effectiveness for domain adaptation.
Why it matches plant phenotyping methods植物病害画像を対象とする大規模VQAデータセットの構築・ベンチマークが研究の中心であり、植物の病害状態を画像から評価する再利用可能なデータセットです。
abstractwe present PlantExpertVQA, a large-scale visual question answering (VQA) dataset designed to advance vision-language models for agricultural decision-making.
Reproduction assets found保存済みの本文根拠を更新済みルールで再検証し、公開資産1件を確認しました。Code · publicThe code for the programmatic QA generation pipeline, the data-refinement and template-paraphrasing steps, the automated outlier-detection pipeline, and the parameter-efficient fine-tuning experiments reported in this work is publicly available at https://github.com/syed-nazmus-sakib/PlantExpertVQA.Open asset ↗syed-nazmus-sakib/PlantExpertVQAhtml-lines:578-597Code / dataset availability confirmedEurope PMC · checked 5 Sept 2026
The tomato plant is considered one of the most important crops in the world, yet it is vulnerable to various diseases that affect crop quality and agricultural productivity. These challenges have driven the need for an efficient and intelligent plant disease detection system. With the development of computer vision and artificial intelligence, this proposed methodology based on deep learning for tomato leaf diseases has been presented. Two public datasets: Taiwan DS with nine classes and Tomato Leaf Diseases Detection Computer Vision Dataset (TLDDCV DS) with seven classes have been used to test this system. This system begins with plant image processing, which includes gamma correction and bilateral filtering, to enhance image quality and clarity while preserving key disease features. Then, a genetic metaheuristic algorithm was used to automatically select the most significant hyperparameters, further optimizing both processing time and accuracy. After that, the tomato leaf disease detection applies the You Only Look Once version 11 Nano (YOLOv11n) model. The YOLOv11n backbone is edited through a Data-efficient Image Transformer (DeiT) to improve the system's capacity for learning global contextual information and long-range dependencies. Experimental results demonstrate that the proposed system outperforms existing methods. It achieved an average mAP@50 of 97.8%, mAP@50-95 of 93.4%, precision of 97.3%, recall of 93.8%, and F1-score of 95.5% on the Taiwan dataset. Additionally, it achieved an average mAP@50 of 87%, mAP@50-95 of 48%, precision of 83.9%, recall of 70.3%, and F1-score of 76.4% on the TLDDCV dataset. These results demonstrate the generalizability and effectiveness of the proposed system in real-world agricultural situations.
Why it matches plant phenotyping methodsトマト葉の病徴を画像から検出・分類する深層学習手法の開発と2データセットでの性能評価が研究の中心であり、植物病害状態のフェノタイピングに該当する。
abstractthe tomato leaf disease detection applies the You Only Look Once version 11 Nano (YOLOv11n) model.
Reproduction assets foundThe paper uses two public Roboflow tomato leaf disease image datasets and states its source code is publicly available on Zenodo, all with explicit availability statements and URLs.Dataset · publicThe first dataset is the Taiwan dataset, which can be found at the following link: (https://universe.roboflow.com/bryan-b56jm/tomato-leaf-disease-ssoha).Open asset ↗tomato-leaf-disease-ssohalines:317-328Dataset · publicThe second dataset is the TLDDCV dataset, which can be found at the following link: (https://universe.roboflow.com/sylhet-agricultural-university/tomato-leaf-diseases-detect)Open asset ↗tomato-leaf-diseases-detectlines:317-328Code · publicThe source code of the proposed framework, including the implementation of the proposed methodology and experimental setup, is publicly available in the Zenodo repository: https://doi.org/10.5281/zenodo.20777853 .Open asset ↗Zenodo · 10.5281/zenodo.20777853lines:317-328Plant phenotyping relevance match · UnverifiedCrossref · checked 14 Sept 2026
Published8 Aug 2026International Journal of Engineering Trends and TechnologyCited by 0 · OpenAlex ↗
Brassica juncea (Mustard) is one of the most economic seed vegetable crops of the world, playing a major role in the production of world edible oil and the agricultural economy. The third-largest producer is India, which had an area under cultivation of about 8.6 million hectares of Mustard in 2021 22, and annual revenue of over USD 5 billion in 2021 22. Nevertheless, the presence of diseases like Alternaria Leaf Spot, White Rust, Powdery Mildew, and Septoria Leaf Spot threatens yield and quality by up to an estimated 2070% loss every year, based on the severity of the disease, and thus economic losses are estimated at over USD 1.5 billion per year in India alone. Traditional diagnostic systems are based on a manual examination of an agronomist trained to look at the sample and make a judgment, which is time-consuming, subjective, and subject to human error. Current deep learning methods of automated disease detection, promising as they are, are prone to inaccuracies on complex disease patterns, poor uncertainty estimation that is essential in real-world implementation, and poor generalizability to different field conditions. In response to these drawbacks, Swin-BNN-RF, a hybrid framework that combines Swin Transformer as a hierarchical attention-based feature extractor, Bayesian Neural Network (BNN) with symmetrized posterior as a probabilistic learner, and a Random Forest (RF) as an ensemble classifier, is proposed in this study. The Swin Transformer also harnesses local and global spatial biases with its shifted window self-attention network, and it is able to extract better features on leaf images of high-resolution. The uncertainty estimates of the BNN component are trusted, and unambiguous predictions are highlighted to get the opinion of the human expert. Random Forest classifier uses the bagging and boosting ensemble methods to improve stability and the robustness of the classification. A large dataset was experimented with; it consisted of more than 10,000 samples per category of disease in four diseases. In the case of binary classification, the proposed model was 98.32% accurate, 98.52% precise, 98.70% recall, and 98.36% F1. On multi-class classification, it obtained 97.50, 97.82, 98.51, and 97.46 accuracy, precision, recall, and F1 score, respectively, which showed consistent performance in comparison with state-of-the-art models such as EfficientNet, MobileNet, and Residual Networks. The contribution of each component is verified by the Ablation studies and statistical analysis of significance (p
Why it matches plant phenotyping methodsマスタード葉の画像から病害状態を推定する深層学習フレームワークを開発・評価しており、植物病害表現型の取得・分類手法が中心である。
abstractSwin-BNN-RF, a hybrid framework that combines Swin Transformer as a hierarchical attention-based feature extractor, Bayesian Neural Network (BNN) with symmetrized posterior as a probabilistic learner, and a Random Forest (RF) as an ensemble classifier, is proposed in this study.
Accurate detection of small-target diseases on apple leaves is of great importance for optimizing orchard management and facilitating precision agriculture. Small-target disease detection remains challenging due to insufficient features and complex backgrounds. This work proposes an effective detector for apple leaf small-target diseases called ALSDet. The global context module is integrated into Stage2 to Stage4 of the ResNet-50 backbone, yielding a refinement of the feature-extraction architecture. In the bottleneck blocks of the Stage2 and Stage3, dilated convolution is used in place of the normal 3×3 convolution to enlarge the receptive field for small targets and strengthen feature extraction. During the model training phase, a multi-scale training strategy combined with the online hard example mining method is adopted to focus on learning hard samples and enhance adaptability for various scale targets. According to the experimental results, ALSDet obtains a mean average precision (mAP) of 65.6% and an average recall (AR) of 71.2% on the dataset. The proposed model achieves the highest levels in both mAP and AR when compared to the popular object detection models, such as Cascade R-CNN, Faster R-CNN, GFL, Grid R-CNN, Libra R-CNN, FCOS, VFNet, RetinaNet, SSD, YOLOv7, and YOLOv8. For small-target diseases like rust and frog eye leaf spot, the average precision surpasses 87% with an intersection over union (IoU) threshold of 0.5. These results confirm that ALSDet achieves stable performance against existing methods, demonstrating its potential as a practical tool for intelligent orchard disease management.
Why it matches plant phenotyping methodsリンゴ葉の病斑を画像から検出する深層学習モデルを開発・比較評価しており、植物の病害状態の取得・推定が研究の中心である。
abstractThis work proposes an effective detector for apple leaf small-target diseases called ALSDet.
Identifying plant health conditions is an emerging precision-agriculture and food-security challenge, intensified by deploying deep-learning models on memory- and power-constrained edge devices. We present a TinyMLOps pipeline spanning model design, optimization, quantization, and deployment across diverse edge devices, evaluated under controlled laboratory conditions. Using a dataset derived from the PlantVillage benchmark, 39 fine-grained classes are aggregated into three superclasses: healthy leaf, unhealthy leaf, and no leaves. The resulting system therefore performs plant health-status classification and background filtering rather than diagnosing specific diseases. We train a MobileNet-based convolutional neural network jointly optimized for classification accuracy and computational efficiency, adopting state-of-the-art hyperparameter optimization (HPO) tools. Five models are selected, four from the Pareto Front and one as the biggest evaluated model during HPO, converted to LiteRT and ONNX, and evaluated at float32 and post-training int8 precision on a Raspberry Pi Zero 2 W and an STM32H743ZI microcontroller. At float32, LiteRT is 1.87–2.65× faster than ONNX Runtime on the Raspberry Pi across all five models. Relative to their float32 LiteRT counterparts, the int8 LiteRT models are 2.83–3.67× smaller on disk and 21.3–31.2% faster on the same board, at a cost in F1-score of between 0.0010 and 0.0068. On the microcontroller, only the two smallest models deploy at both precisions; for these, the fully quantized int8 variants are 4.3× faster and 3.85× smaller in MCU flash footprint than the float32 counterparts. The mid-range model fits the 2 MB flash and 1 MB RAM budget only when quantized, while the two largest models exceed it in every configuration tested.
Why it matches plant phenotyping methods葉画像から植物の健康状態を推定する分類手法と、エッジデバイス向けの最適化・量子化・展開パイプラインが研究の中心であり、植物状態の画像ベースフェノタイピングに該当する。
abstractWe present a TinyMLOps pipeline spanning model design, optimization, quantization, and deployment across diverse edge devices, evaluated under controlled laboratory conditions.
Reproduction assets foundThe paper's plant-phenotyping measurements are based on a derived PlantVillage dataset (39 classes aggregated into three superclasses) that the authors explicitly state is openly available in their own GitHub repository, also catalogued in the AgrifoodTEF Data Space. No author analysis code or trained model checkpointsDataset · publicThe data used in this study are derived from the openly available GitHub repository available at https://github.com/FBK-OpenIoT/PlantVillage-AugNoLeaves , accessed on 1 July 2026.Open asset ↗FBK-OpenIoT/PlantVillage-AugNoLeaveslines:1355-1403Dataset · publicPlantVillage-AugNoLeaves—AgrifoodTEF Data Space Catalogue. 2025. [(accessed on 1 July 2026)]. Available online: https://dataspace.agrifoodtef.eu/asset/did:op:3091fdcf83a05784416e585e4e45ea24afaf8c925a891921a3949acd98426f65Open asset ↗did:op:3091fdcf83a05784416e585e4e45ea24afaf8c925a891921a3949acd98426f65lines:1424-1474Plant phenotyping relevance match · UnverifiedCrossref · checked 6 Sept 2026
Early and accurate plant disease detection is essential for reducing crop losses and supporting sustainable agricultural management. Although deep learning-based approaches have achieved strong performance in plant disease analysis, many existing models require substantial computational resources, which limits their use in resource-constrained agricultural environments. This study proposes ShuffleNetV2-hSimKD, a lightweight integration framework for plant disease detection. It adopts ShuffleNetV2 as the backbone and incorporates the parameter-free SimAM attention mechanism to enhance disease-related feature representation without introducing additional learnable parameters. In addition, the standard ReLU activation function is replaced with h-swish to improve nonlinear feature extraction and preserve informative feature responses. A hybrid knowledge distillation strategy is further employed to transfer both output-level and feature-level knowledge from a high-capacity teacher model to the lightweight student network during training. Unlike previous studies that apply these techniques in isolation, ShuffleNetV2-hSimKD synergistically integrates parameter-free SimAM, h-swish optimization, and hybrid KD to overcome the representation limitations of lightweight backbones in subtle disease symptom detection. The proposed framework was evaluated on a balanced subset of the PlantVillage dataset, in which leaf images were categorized as healthy or diseased. ShuffleNetV2-hSimKD achieved an accuracy of 90.41% with only 1.4M parameters and 151M FLOPs. Compared with representative lightweight Convolutional Neural Networks (CNNs), the proposed model achieved improved accuracy and recall while maintaining low computational complexity. These results demonstrate that ShuffleNetV2-hSimKD provides an effective balance between detection performance and computational efficiency, highlighting its potential as a lightweight candidate for plant disease detection in resource-constrained agricultural scenarios.
Why it matches plant phenotyping methods植物の葉画像から健全・罹病状態を推定する軽量深層学習モデルを開発し、精度と計算効率を評価しており、病害表現型の取得・推定法が中心である。
abstractThis study proposes ShuffleNetV2-hSimKD, a lightweight integration framework for plant disease detection.
Introduction The precise detection of microscopic tea leaf diseases is a prerequisite for sustainable precision agriculture. While recent deep learning advancements often favor architectural complexity, this "complexity bias" frequently introduces computational redundancy-a "complexity tax"-that destabilizes gradient flow and fails to resolve critical resolution bottlenecks for micro-lesion identification. Methods We propose Opti-YOLOv11n, a minimalist optimization paradigm prioritizing physical input fidelity and stabilized gradient dynamics. Utilizing a dataset of six pathological categories, our framework employs high-resolution scaling (832×832) combined with a momentum-based SGD optimizer and a cosine annealing schedule to reconstruct essential spatial textures. Results Opti-YOLOv11n achieved a peak Precision of 98.87% and a Recall of 95.97%, while reducing the parameter count to 2.35 M-a 9.2% decrease relative to the baseline-and maintaining a real-time inference speed of 104.7 FPS on edge-simulated hardware. Discussion Statistical verification via 5-fold cross-validation confirms superior generalization stability. These results substantiate that strategic structural pruning and physical input scaling provide a more robust technical benchmark for autonomous plant protection than the adoption of excessive architectural depth.
Why it matches plant phenotyping methods茶葉病害の微小病斑を画像から検出する深層学習手法を開発し、精度・計算量・推論速度・交差検証で技術評価しているため、植物病害フェノタイピング手法が中心である。
abstractWe propose Opti-YOLOv11n, a minimalist optimization paradigm prioritizing physical input fidelity and stabilized gradient dynamics.
Abstract Bacterial fruit blotch (BFB) caused by Acidovorax citrulli , is a destructive seed-transmitted disease that seriously threatens global cucurbit production. To address the need for detecting A. citrulli -infested seeds, this study developed a colony identification model and a seed infestation detection model based on multispectral imaging. The combined nMahalanobis and nCDA colony identification models achieved a high recall of 0.999 and a low false-positive rate of 0.149 when tested on samples. For infested melon seed detection, we evaluated and compared the classification performance of seven machine learning models. The results showed that LDA, logistic regression, and MLP exhibited stable performance on artificially infested seed samples. Furthermore, multi-cultivar modeling improved model generalizability and demonstrated the feasibility of using multispectral imaging to identify naturally infested seeds. When a qPCR Ct threshold of 37 was used to define seed infestation status, the logistic regression model achieved a validation accuracy of 0.82. Overall, these findings demonstrate the potential of multispectral imaging for colony identification and seed infestation detection, providing a new technical approach and a scientific basis for seed health testing of bacterial fruit blotch in cucurbit crops.
Why it matches plant phenotyping methodsマルチスペクトル画像と機械学習により、感染種子という植物器官の状態を検出する手法を開発・比較・検証しており、表現型取得が研究の中心である。
abstractthis study developed a colony identification model and a seed infestation detection model based on multispectral imaging.
Precise and reliable diagnosis of leaf diseases in tomato is essential for enhancing crop cultivation and minimizing agricultural losses. While deep learning models have performed well on benchmark datasets, the majority of present techniques rely on flat multi-class classification, which predicts all disease categories simultaneously. Such formulations promotes inter-class confusion, particularly when biologically different diseases with similar visual symptoms are learned within a same model. To overcome this constraint, we propose a biologically structured hierarchical deep learning framework in this study. Instead of directly classifying 10 disease classes, the proposed method first classifies leaf images into meaningful biological groups such as bacterial, fungal, pest-associated and healthy using a vision transformer (ViT) model. Then, specialized convolutional neural network (CNN) experts perform fine-grained classification within each category. The proposed hierarchical model shows an overall accuracy of 97.8%, when validated on PlantVillage tomato dataset. A flat ViT model trained with class-weighted loss obtained 96.3% accuracy, whereas a flat CNN model reached 99.3% under clean conditions but decreased sharply to 41% under Gaussian perturbation ( σ = 0.05). On the other hand, the hierarchical model performed steadily under noise with 97.4% accuracy at the same perturbation level. These results indicate that adding biological structure to model design reduces confusion, helps prevent imbalance effects and increases robustness, providing a more trustworthy and interpretable solution for real-world agricultural disease diagnosis.
Why it matches plant phenotyping methodsトマト葉画像から病害状態を分類する深層学習手法を開発し、既存モデルとの比較およびノイズ下での技術検証を行っており、植物表現型（病害状態）の取得・推定が中心である。
abstractwe propose a biologically structured hierarchical deep learning framework in this study.
Reproduction assets foundThe paper's phenotyping/classification measurements are based on the public PlantVillage tomato leaf image dataset, which the authors explicitly state was analyzed and provide a public Kaggle URL. No author analysis code, trained models, or paper-specific supplementary assets are described with availability language.Dataset · publicIsabel Luna-Maldonado , Autonomous University of Nuevo León, Mexico
Reviewed by: Noredine Hajraoui , Moulay Ismail University, Morocco
Tri Handhika , Universitas Gunadarma Pusat Studi Komputasi Matematika, Indonesia
Data availability statement
Publicly available datasets were analyzed in this study. This data can be found here: https://www.kaggle.com/datasets/charuchaudhry/plantvillage-tomato-leaf-dataset .
Author contributions
HG: Conceptualization, Formal analysis, Methodology, Writing – original draft, Writing – review & editing. SR: Supervision, Validation, Writing – review & editing. BL: Supervision, Validation, Writing – review & editing.
Conflict of interest
The author(s) declared thaOpen asset ↗Kaggle · charuchaudhry/plantvillage-tomato-leaf-datasetlines:588-616Plant phenotyping relevance match · UnverifiedCrossref · checked 14 Sept 2026
Published4 Aug 2026International Journal of Innovative Science and Research TechnologyCited by 0 · OpenAlex ↗
Accurate, field-deployable diagnostic tools are needed to close the diagnostic gap that limits fungicide targeting among smallholder tomato farmers in Northern Nigeria. This study developed and validated a lightweight convolutional neural network (CNN) for automated diagnosis of five major tomato fungal diseases plus three additional common conditions, trained on field-collected leaf images from Kano and Kaduna States. A MobileNetV2 architecture pre-trained on ImageNet was fine-tuned via transfer learning on more than 10,000 images across ten disease and health classes, using farm-level dataset splitting to prevent data leakage and five-fold cross-validation for model selection.
Why it matches plant phenotyping methodsトマト葉画像から病害・健全状態を直接推定するCNNを開発し、データ分割と交差検証で技術検証しており、植物状態の取得・推定手法が中心である。
abstractThis study developed and validated a lightweight convolutional neural network (CNN) for automated diagnosis of five major tomato fungal diseases plus three additional common conditions
Purpose Conventional plant disease detection is time-consuming and prone to human error. The purpose of this study is to propose an edge artificial intelligence (AI)-based deep learning framework for plant disease detection under real-field conditions. The model integrates convolutional neural networks (CNNs) with a Sliding Window Mean Absolute Deviation (SWMAD) preprocessing technique to address illumination variability and complex background conditions. Design/methodology/approach A dual-layer CNN model is developed for plant disease classification using HSV segmentation, flood-fill segmentation and SWMAD preprocessing to handle real-field variations. The model is trained on PlantVillage and real farm images and deployed via TensorFlow Lite for real-time offline detection. TensorFlow Lite is used to enable efficient on-device inference for deployment in resource-constrained environments. Findings Benchmark experiments conducted on the PlantVillage dataset achieved a classification accuracy of 99.91% under controlled conditions. On the hybrid dataset comprising PlantVillage and real-field images, the optimized CNN framework achieved a validation accuracy of 95.01% following extensive evaluation of optimizers, layer architectures and worker configurations. The integration of the proposed SWMAD preprocessing technique into the finalized architecture further improved the validation accuracy to 97.38%, demonstrating enhanced robustness and classification performance under practical agricultural conditions in the final deployed model. Originality/value The originality of this study lies in several novel contributions. First, we introduce an SWMAD-based preprocessing technique, which enhances local statistical variations in leaf images by capturing pixel-level deviations from neighborhood intensity means. Unlike, conventional preprocessing methods, SWMAD is specifically designed to handle real-field challenges such as illumination variation, noise and complex backgrounds. The improvement in validation accuracy demonstrates the effectiveness of the proposed approach in capturing more discriminative features compared to existing techniques, thereby improving overall model robustness and reliability in practical agricultural environments.
Why it matches plant phenotyping methods植物病害という植物状態を画像から推定する深層学習・前処理・エッジ展開手法が研究の中心であり、実環境での検証も行っているため。
abstractThe purpose of this study is to propose an edge artificial intelligence (AI)-based deep learning framework for plant disease detection under real-field conditions.
This paper explores how deep learning methods can be used to monitor the health of crops and identify diseases, particularly for the apple crop. As the need for food security and sustainable farming methods increases, there is a strong demand for early detection of crop diseases. We have used a Convolutional Neural Network (CNN), based on the model of VGG16 architecture, since the model is known to be effective in image classification. The dataset contained 7771 training images for to enhance machines deep learning regarding plant diseases. Following that, validation image collection of 1747 images divided into four health conditions of the apple crops. In addition, the model was evaluated using 196 new images as a final test. To enhance the model capacity for recognizing diseases of real leaves rather than just memorize exact training pictures, data augmentation was used with ImageDataGenerator of TensorFlow. This means the training images were zoomed, rotated, and shifted to enable the machine detects more variations. Ten epochs of training were performed to measure the model accuracy. The results indicated that the model obtained significant improvement in training and validation accuracy from 56.43% to 78.12% and 92.94 to 96.93%, respectively. Most impressively, the final test dataset, which contained completely new images, scored an accuracy rate of 98%. The results indicate that in the architecture field the application of deep learning methodologies is effective, suggesting that automated detection of diseases by using sophisticated image analysis manages crop diseases identification efficiently. Combination of these methods successfully creates avenues for novel research to built real-time systems of crop disease monitoring, which help farmers increase their productions and farm their lands sustainably.
Why it matches plant phenotyping methodsリンゴ葉画像から健康状態・病害を推定するCNN画像解析手法が研究の中心であり、学習・検証・新規画像での評価も実施しているため、植物病害表現型の手法研究として含める。
abstractThis paper explores how deep learning methods can be used to monitor the health of crops and identify diseases, particularly for the apple crop.
The simultaneous diagnosis of diseases and evaluation of age quality grades in tea leaves are critical for precision agriculture and the economic valuation of tea products. Although deep learning has shown promise in agricultural vision tasks, current multi-task models often suffer from performance degradation due to feature conflicts: tea leaf disease recognition relies heavily on macro-structural lesions, whereas tea leaf-age quality grading depends on micro-textural features such as trichome density and color uniformity. To address this discrepancy, we propose a novel dual branch fusion network. Our architecture fundamentally decouples the feature extraction process by utilizing a dual branch mechanism. The first branch employs global average pooling to capture first-order spatial statistics; it can retain the global structural layout necessary for macro-lesion detection. The second branch introduces a dimensionality-reduced self-bilinear pooling module to compute second-order covariance matrices; it can effectively capture the fine-grained textural patterns essential for micro-grade classification. These decoupled features are subsequently fused and optimized through a weighted multi-task loss function. Experimental results on a comprehensive tea leaf dataset demonstrate that the proposed dual fusion framework significantly outperforms baseline models. The proposed network can rescue the disease classification accuracy drop observed in standard bilinear models while maintaining exceptional grading performance. Furthermore, the proposed network maintains a compact parameter footprint and low computational complexity. This balance renders it suitable for deployment on agricultural Internet of Things edge devices where inference speed is critical.
Why it matches plant phenotyping methods茶葉の病害状態と葉齢品質を画像から推定する深層学習手法を開発し、データセット上でベースラインと比較評価しており、表現型取得・推定法が中心である。
abstractwe propose a novel dual branch fusion network
Reproduction assets foundThe paper's Data Availability Statement publicly releases the two tea leaf image datasets used for its phenotyping tasks (disease recognition and leaf-age quality grading) via Mendeley Data. The authors' analysis code and trained models are only promised 'upon acceptance' with no public URL, so they do not qualify.Dataset · publicThe tea leaf disease recognition dataset analyzed in this study is available from https://data.mendeley.com/datasets/744vznw5k2/3 (accessed on 11 February 2026)Open asset ↗744vznw5k2/3lines:514-565Dataset · publicthe tea leaf grading dataset is available from https://data.mendeley.com/datasets/7t964jmmy3/1 (accessed on 11 February 2026)Open asset ↗7t964jmmy3/1lines:514-565Plant phenotyping relevance match · UnverifiedCrossref · checked 14 Sept 2026
Published4 Aug 2026International Journal of Innovative Science and Research TechnologyCited by 0 · OpenAlex ↗
Smallholder tomato farmers in Northern Nigeria correctly identify major fungal diseases only about 41% of the time using unaided visual inspection, contributing to fungicide misapplication and avoidable yield loss. This study evaluated the field impact of SmartfarmerApp, a smartphone-based diagnostic application built on a validated convolutional neural network, on farmer disease identification accuracy. A pre-test/post-test controlled design allocated 240 tomato farmers across eight Local Government Areas in Kano and Kaduna States to an intervention group (n = 120, received the application) or a control group (n = 120, continued with conventional information sources), using computer-generated random allocation stratified by location and gender.
Why it matches plant phenotyping methodsトマトの病害状態を画像・視覚観察から判定するスマートフォン診断アプリを対象に、現場での識別精度を対照評価しており、植物病害フェノタイピング手法の応用・検証が中心である。
abstractThis study evaluated the field impact of SmartfarmerApp, a smartphone-based diagnostic application built on a validated convolutional neural network, on farmer disease identification accuracy.
High perishability of vegetables associated with rapid physiological deterioration and microbial spoilage results in 30-50% post-harvest losses globally. In earlier days, post-harvest diseases were detected by visual inspection, microbial culturing, and molecular assays. These destructive methods are time-consuming and unsuitable for real-time monitoring. Volatile organic compounds (VOCs) have emerged as promising non-destructive biomarkers enhanced for early detection of quality deterioration and pathogen attack, often before visible symptoms appear. This review provides a thorough overview of current knowledge on VOC emissions in postharvest vegetables with their biosynthetic origins, classification, and roles in different kinds of stress responses and host microbe interactions. VOC alterations during spoilage and disease progression are systematically evaluated, highlighting vegetable group-specific patterns and quantitative dynamics of key biomarkers emitted naturally and due to mechanical and microbial spoilage. GC-MS, GC-IMS, PTR-MS, electronic noses, and biosensors are advanced analytical techniques that are critically compared with emphasis on their integration with machine learning for classification accuracy. Despite this significant progress, variability across cultivars and storage conditions, overlap between host- and pathogen-derived volatile metabolites, and an enduring gap between laboratory findings and commercial applications are major challenges that cannot be ignored. The development of real-time monitoring systems, vegetable-specific VOC databases, and integration with smart storage infrastructure powered by the Internet of Things and artificial intelligence must be prioritized in the future.
Why it matches plant phenotyping methods野菜の品質劣化・病害状態をVOCで非破壊推定する分析技術と機械学習を中心に比較・レビューしており、植物状態の取得手法が主題である。
abstractVolatile organic compounds (VOCs) have emerged as promising non-destructive biomarkers enhanced for early detection of quality deterioration and pathogen attack, often before visible symptoms appear.
Background Accurate and efficient detection of citrus leaf diseases is important for orchard monitoring, early intervention, and intelligent disease management. However, practical application in natural orchard environments remains challenging because of complex backgrounds, large variation in symptom scale, strong interclass similarity, and limited edge computing resources. Methods In this study, a lightweight object detection model, SKM-YOLOv11, was developed based on YOLOv11n for citrus leaf disease recognition in natural scenes. A self-built dataset was constructed from public images and field images, containing 6414 images across six classes. StarNet-S050 was introduced as the backbone, C3k2-Star was designed to enhance feature fusion across scales, and a lightweight shared detection head, MNS-Head, was constructed to reduce prediction redundancy. Results Compared with YOLOv11n, SKM-YOLOv11 increased Precision, Recall, and mAP @0.5 by 2.92, 1.47, and 0.95 percentage points, respectively. Meanwhile, FLOPs, parameter count, and model size were reduced by 31.7%, 32.7%, and 34.55%, respectively. Edge deployment on Jetson Orin NX Super achieved an inference speed of 72.45 frames per second. Conclusion The proposed model has strong potential for real-time citrus disease screening on resource-constrained devices and provides a feasible solution for edge-based intelligent disease management in natural orchards.
Why it matches plant phenotyping methods柑橘葉の病害状態を画像から認識する軽量物体検出モデルを開発し、データセット、精度比較、エッジ実装性能まで評価しており、植物表現型（病害状態）の取得・推定手法が中心である。
abstracta lightweight object detection model, SKM-YOLOv11, was developed based on YOLOv11n for citrus leaf disease recognition in natural scenes.
Soybean diseases caused by fungal, bacterial, and viral pathogens represent a major constraint to global agricultural productivity. Although molecular phylogenetic analyses have advanced the understanding of pathogen evolution, the extent to which disease phenotypes reflect evolutionary relationships remains poorly understood. In this study, we developed an integrative framework combining deep learning-based phenotypic analysis with phylogenetic inference to investigate the relationship between soybean disease symptoms and pathogen evolution. An EfficientNet-B0 convolutional neural network (CNN) was trained to classify 10 soybean disease classes comprising 703 leaf images and achieved a mean cross-validation accuracy of 98.72 ± 1.17%, a weighted F1-score of 98.74 ± 1.16%, and a macro F1-score of 98.47 ± 1.74%. Evaluation on a held-out test set generated through image-level partitioning yielded an accuracy of 96.19%, a weighted F1-score of 96.28%, and a macro F1-score of 95.86%. Latent feature embeddings revealed a structured phenotypic space with clear separation among most disease classes and enabled quantitative analyses of phenotypic similarity. To provide biological context, taxonomy-derived distance matrices and sequence-based phylogenetic analyses of the fungal subset using 28S rRNA sequences were compared with CNN-derived phenotypic representations. A Mantel test identified a moderate and statistically significant association between phenotypic and phylogenetic distances (Spearman r = 0.3393, p = 0.0050), indicating that pathogen evolutionary history contributes to disease phenotype while explaining only part of the observed phenotypic variation. Overall, the results demonstrate that deep learning effectively captures biologically meaningful phenotypic information while highlighting that disease symptoms arise from the combined influence of pathogen evolution, host responses, and environmental conditions. This study provides an integrative framework for combining image-based phenotyping with phylogenetic analysis to support biologically informed interpretation of plant disease phenotypes.
Why it matches plant phenotyping methods深層学習による画像ベースのダイズ病徴分類・表現型空間抽出が研究の中心であり、植物病害状態を直接推定する手法を開発・評価している。
abstractwe developed an integrative framework combining deep learning-based phenotypic analysis with phylogenetic inference
• First PRISMA-ScR mapping of 79 HSI-ML asymptomatic detection studies (42 species, 74 pathogens) • Controlled-to-field accuracy gap quantified: 91.4% vs. 86.3% (5.1 pp, p = 0.0163 ) • 56.8% of studies omit temporal sampling documentation (CV = 139%) • SWIR underutilization (11.8%) reflects economic, not scientific, barriers • DBVS proposed as standardized temporal metric for cross-study comparability Plant disease management requires non-invasive detection methods capable of identifying infections before visible symptom manifestation, thereby enabling timely intervention. Hyperspectral imaging combined with machine learning and deep learning (HSI-ML) achieves 90.2% classification accuracy in controlled environments for asymptomatic plant detection; however, systematic characterization of methodological practices across this rapidly expanding field remains absent. This PRISMA-ScR compliant scoping review mapped 79 peer-reviewed studies (2010–2025) encompassing 42 plant species and 74 pathogenic agents using a Population-Concept-Context framework. Visible-near-infrared (VNIR) systems dominated deployment (61.8%, n = 49 ), while short-wave infrared (SWIR) systems remained substantially underutilized (11.8%, n = 9 ) due primarily to economic rather than scientific constraints. Among 67 unique algorithms identified, machine learning methods accounted for 30.7% (SVM, random forests, and PLS-DA predominant), whereas deep learning represented 28.4% (2D-CNN, 3D-CNN, and hybrid architectures). Critical methodological gaps emerged: 56.8% of studies omitted temporal sampling documentation (detection latency range: 1–56 days post-inoculation; coefficient of variation = 139%). Platform-stratified analysis revealed controlled environments achieved 91.4% ± 6.6% classification accuracy ( n = 48 ) versus 86.3% ± 9.1% for field/UAV deployments ( n = 26 ), representing a significant 5.1 percentage-point performance decrease ( p = 0.0163 ). Detection accuracy exhibited a weak negative correlation with detection timing ( ρ = − 0.33 , p = 0.067 ), though this association did not reach conventional statistical significance. Methodological heterogeneity—rather than algorithmic limitations—constitutes the primary barrier to field operationalization. Adoption of Days Before Visible Symptoms (DBVS) as a standardized temporal metric could resolve an estimated 40–50% of cross-study variance currently attributed to inconsistent asymptomatic-phase definitions.
Why it matches plant phenotyping methods植物病害の無症状感染をHSIと機械学習で検出する手法群を対象に、79研究の方法、精度、時間指標、標準化課題を体系的に評価したレビューであり、フェノタイピング手法が中心です。
titleEarly detection of plant pathogens in the asymptomatic phase: A scoping review of hyperspectral imaging combined with machine learning
Plant diseases have continued to threaten agricultural productivity, while manual inspection methods have remained inefficient and prone to subjectivity. This study proposed and assessed a hybrid framework integrating a Convolutional Neural Network (CNN) with a Large Language Model (LLM) to perform image-based plant leaf disease classification accompanied by interpretable diagnostic explanations. EfficientNetV2-M was employed as the visual backbone and trained on 11 selected classes of apple, grape, and potato leaf images derived from the PlantVillage dataset. A structured data splitting strategy was applied to ensure reliable model validation and unbiased testing. The classification capability of the CNN component was examined through standard multi-class evaluation indicators, including class-wise predictive consistency and error distribution analysis. Experimental results indicated that the model delivered highly consistent predictions, reaching a peak test accuracy of 99.79%, reflecting its robustness in distinguishing visually similar disease patterns. To overcome the black-box limitation, prediction outputs were transformed into structured prompts and processed by GPT-4o to generate contextual explanations. The generated narratives systematically described observable symptoms, highlighted distinguishing characteristics, and suggested initial management actions. Overall, the proposed hybrid system demonstrated that combining high-performance visual recognition with language-based reasoning enhanced both diagnostic reliability and interpretability in digital agriculture applications.
Why it matches plant phenotyping methods植物葉の画像から病害状態を推定するCNN・LLM統合手法を開発・評価しており、病害分類と説明生成が研究の中心であるため。
abstractThis study proposed and assessed a hybrid framework integrating a Convolutional Neural Network (CNN) with a Large Language Model (LLM) to perform image-based plant leaf disease classification accompanied by interpretable diagnostic explanations.
Reproduction assets foundThe paper uses the public PlantVillage color dataset (11 apple/grape/potato classes, 9,385 images) and explicitly points to it in the DATA AVAILABILITY statement as the replication package data. The authors also provide a public Streamlit demonstration of their hybrid CNN–LLM system. No author analysis code or trained-Dataset · publicaper. The research was conducted for academic purposes, and no financial, commercial, or
personal relationships influenced the study design, data analysis, interpretation of results, or
preparation of the manuscript.
DATA AVAILABILITY
The data associated with this study are publicly available online in the replication package.
[https://github.com/spMohanty/PlantVillage-Dataset/tree/master/raw/color]
AUTHOR CONTRIBUTIONS
Frenky Riski Gilang Pratama: Conceptualization; Programming and coding
implementation; Methodology; Writing-Original Draft. Sugiarto Surono: Conceptualization;
Methodology; Supervision; Writing-Review & Editing. Aris Thobirin: Proofreading Paper;
Writing-Review & Editing; FunOpen asset ↗https://github.com/spMohanty/PlantVillage-Dataset/tree/master/raw/colorpdf-raw-page:10 lines:1-52Plant phenotyping relevance match · UnverifiedCrossref · checked 14 Sept 2026
ABSTRACT Timely and reliable assessment of plant health is essential for resilient and sustainable agriculture, yet diagnostic practice remains divided between accurate but laboratory‐bound assays and emerging field‐deployable technologies. Herein, we adopt a plant‐centric and systems‐level perspective to synthesize advances in smart sensing for plant health monitoring reported between 2000 and 2026. Rather than surveying individual devices in isolation, we organize the literature around how sensing technologies are fabricated, integrated, and translated into actionable agronomic insights. Our synthesis reveals a clear shift toward multimodal, minimally invasive sensing architectures that combine material and fabrication innovations with contact and non‐contact modalities spanning organ, canopy, and landscape scales. We find that the most impactful progress arises not from individual sensors alone, but from integrated pipelines that couple sensing hardware with edge intelligence, cross‐scale data fusion, and explainable analytics. Furthermore, persistent barriers, including calibration transfer, long‐term stability, power autonomy, dataset bias, and cybersecurity, continue to impede widespread adoption. Based on these findings, we outline design principles and research priorities needed to accelerate translation, emphasizing standardized validation against biological benchmarks, energy‐autonomous and environmentally responsible sensor systems, and artificial intelligence (AI) frameworks capable of robust generalization across crops and environments. Looking ahead, we argue that plant health monitoring will increasingly be defined by closed‐loop systems that directly link plant physiological or pathological signals to adaptive management, positioning smart sensing as a cornerstone of data‐driven and climate‐resilient agriculture.
Why it matches plant phenotyping methods植物の健康状態・生理・病理シグナルを対象とするスマートセンシング手法を、統合、検証、校正、データ解析の観点から体系的にレビューしており、植物フェノタイピング手法が中心である。
abstractwe outline design principles and research priorities needed to accelerate translation, emphasizing standardized validation against biological benchmarks
This paper presents an IoT and edge-AI enabled autonomous agricultural robot that performs early plant disease diagnosis and precision irrigation on a single mobile platform. Unlike earlier automated farming systems that rely on visible-spectrum (RGB) imagery and simple threshold-based watering, the proposed system fuses RGB and nearinfrared (NIR) imagery to compute the Normalised Difference Vegetation Index (NDVI), enabling detection of physiological plant stress several days before visible lesions appear. Leaf images are classified using a lightweight attention-guided convolutional neural network that combines a MobileNetV3 backbone with a Convolutional Block Attention Module (CBAM), allowing the network to focus on lesion-relevant channels and spatial regions while remaining compact enough for real-time inference on an ESP32-S3 edge controller. Irrigation and pesticide-spray decisions are no longer governed by a rigid binary threshold; instead, a Mamdani-type fuzzy inference engine fuses soil moisture, ambient temperature, and the NDVI-derived stress index to compute a proportional, continuously variable actuation signal, reducing both water wastage and false triggering. The robot streams sensor readings, classification results, and actuation logs to a cloud dashboard over Wi-Fi/MQTT so that farmers can monitor crop health and irrigation status remotely and receive real-time alerts. Experimental evaluation on a prototype platform shows that the proposed attention-guided model improves disease-classification accuracy over a baseline CNN, the NDVI-assisted pipeline detects stress earlier than colour-only analysis, and the fuzzy irrigation controller reduces water consumption relative to the binary threshold scheme while maintaining optimal soil-moisture levels. The results indicate that combining multispectral sensing, attention-based lightweight deep learning, and fuzzy control on a single autonomous platform is a practical and scalable route towards sustainable, resource-efficient precision agriculture.
Why it matches plant phenotyping methodsRGB/NIR画像からNDVIによる植物ストレスを推定し、葉画像から病徴を分類する取得・解析手法をロボット上で開発・評価しており、植物表現型の測定が中心である。
abstractthe proposed system fuses RGB and nearinfrared (NIR) imagery to compute the Normalised Difference Vegetation Index (NDVI), enabling detection of physiological plant stress several days before visible lesions appear.
Image-based techniques are widely used in plant disease classification to support agricultural productivity and facilitate early detection. This study presents a comparative analysis between a baseline convolutional neural network (CNN) and a ResNet50-based transfer learning model for tomato leaf disease classification. A publicly available dataset containing five categories—tomato bacterial spot, tomato late blight, tomato septoria leaf spot, tomato yellow leaf curl virus, and healthy leaves—was used in the experiments. Model performance was evaluated using several standard classification metrics, with emphasis on overall accuracy. The baseline CNN achieved an accuracy of 97.0%, whereas the ResNet50 model reached 99.6%. The results demonstrate that the ResNet50 model produces more stable and reliable predictions, particularly when distinguishing between visually similar disease classes. These findings confirm that transfer learning can effectively improve classification performance in plant disease recognition tasks.
Why it matches plant phenotyping methodsトマト葉の病徴を画像から分類するCNN/ResNet50手法を比較評価しており、植物病害状態の取得・推定が研究の中心である。
abstractThis study presents a comparative analysis between a baseline convolutional neural network (CNN) and a ResNet50-based transfer learning model for tomato leaf disease classification.
Early screening of tomato leaf diseases is important because foliar symptoms can reduce plant vigor and delay appropriate crop management. This study develops an Android-based tomato leaf disease classification system using MobileNetV2 as a lightweight convolutional neural network (CNN) architecture. The contribution of this work is the integration of model training, independent testing, and on-device Android deployment that supports camera and gallery inputs without relying on server-side computation. The dataset consisted of 1,200 balanced tomato leaf images from five classes: bacterial spot, late blight, target spot, tomato yellow leaf curl virus, and healthy leaf. Images were resized, normalized, augmented for training, and divided into training, validation, and independent testing subsets. The model obtained 94.12% training accuracy, 93.00% validation accuracy, and 89.00% independent test accuracy. The confusion matrix showed that tomato yellow leaf curl virus was classified without error, whereas bacterial spot, late blight, target spot, and healthy leaves produced several misclassifications because of similar lesion and discoloration patterns. The results show that MobileNetV2 is suitable for lightweight mobile disease screening, although larger field datasets, cross-validation, model comparison, and explainability analysis are still needed for broader deployment.
Why it matches plant phenotyping methodsトマト葉の病徴画像から病害状態を分類するCNN手法を開発し、独立テストとモバイル実装まで評価しており、植物表現型取得・抽出が中心である。
abstractThis study develops an Android-based tomato leaf disease classification system using MobileNetV2 as a lightweight convolutional neural network (CNN) architecture.
Sugarcane plant diseases pose a significant threat to agricultural productivity, yet early and accurate identification remains challenging for farmers due to the limitations of manual inspection. This study proposes a sugarcane leaf disease classification system using ConvNeXt V2 Tiny, a modern convolutional architecture with a Global Response Normalization (GRN) mechanism, combined with an ensemble Stratified K-Fold Cross Validation strategy (K=6) to improve generalization on real-world field data. A dataset of 2,948 leaf images spanning five classes (Red Rot, Mosaic, Rust, Yellow Leaf, and Healthy) was used, with field-collected images held out as a fixed test set. The ensemble model achieved a mean validation accuracy of 98.49% ± 0.58% across six folds and a test accuracy of 98.39% on 427 unseen field images, with macro-average precision, recall, and F1-score each reaching 98%. ConvNeXt V2 Tiny substantially outperformed ResNet-50 (87.35%) and EfficientNetV2-S (83.37%) under identical experimental settings, demonstrating superior generalization across the domain gap between curated and field data. The primary contribution of this study is the first application of ConvNeXt V2 Tiny with ensemble K-Fold strategy for sugarcane disease classification, offering high accuracy with moderate computational complexity (28.6M parameters) and practical deployability, as demonstrated through the SugarScan web application.
Why it matches plant phenotyping methodsサトウキビ葉画像から病害状態を推定する画像ベースの表現型解析手法が研究の中心であり、モデル性能の検証・比較も実施しているため含める。
abstractThis study proposes a sugarcane leaf disease classification system using ConvNeXt V2 Tiny
Reproduction assets foundThe paper's phenotyping inputs include a public Kaggle dataset (Sugarcane Leaf Disease Dataset, SLD) of sugarcane leaf disease images used for training/validation, plus field-collected images. Only the Kaggle dataset qualifies as a paper-specific public asset with an authors' URL; no author analysis code, trained modelDataset · publicsecondary data from the Sugarcane Leaf Disease Dataset (SLD)
available publicly on Kaggle (https://www.kaggle.com/datasets/pritpal2873/sug arcane-leaf-disease-dataset)Open asset ↗Kaggle · pritpal2873/sugpdf-page:2 lines:54-60Plant phenotyping relevance match · UnverifiedCrossref · checked 14 Sept 2026
Published31 Jul 2026World Journal of Advanced Engineering Technology and SciencesCited by 0 · OpenAlex ↗
Proper diagnosis of plant disease and nutrient deficiency is crucial in enhancing crop productivity, reducing yield losses and early agricultural interventions. This paper introduces the machine learning approach for automated identification of plant diseases and their severity by analyzing the images of plant leaves. The proposed framework involves image preprocessing, feature extraction, classification and severity estimation, which would enable the accurate identification of various types of disease and estimation of their severity levels while detecting nutrient deficiencies. An extensive image dataset of healthy, diseased and nutrient deficient leaves was used to train and test the models. As illustrated by the experimental results, the proposed framework outperforms the existing machine learning and deep learning methods for plant disease identification and nutrient deficiency detection with the classification accuracy of 98.76% and 98.14% respectively. In addition, the severity assessment module estimates well to enable accurate pesticide and nutrient application, which minimizes chemical use. The proposed framework provides a scalable, efficient, and precise approach for smart crop health monitoring and precision agriculture applications.
Why it matches plant phenotyping methods葉画像から植物病害・栄養欠乏の同定と重症度推定を行う機械学習フレームワークが研究の中心であり、植物状態の画像ベース表現型計測に該当する。
abstractThis paper introduces the machine learning approach for automated identification of plant diseases and their severity by analyzing the images of plant leaves.
Common beanGrapevineLeafClassificationObject detectionStress / disease detectionDisease symptoms / severity
Plant leaf disease is a grave risk to crop suitability and agricultural sustainability, and therefore, the ability to make early and accurate diagnosis is a mandatory need in the contemporary precision farming system.In recent years, deep learning has gained significant attention for image-based plant disease detection.Despite its effectiveness, model performance can be influenced by factors such as redundant feature representations and sensitivity to hyperparameter selection.To address these challenges, this study proposes a nested hybrid optimization framework that combines the Cuckoo Search Algorithm (CSA) for channel selection with the Beluga Whale Optimization Mechanism (BWOM) for tuning the hyperparameters of a Convolutional Neural Network (CNN).The proposed approach is independently evaluated on bean and grape leaf datasets under consistent experimental conditions to assess its disease classification performance.In addition to strong predictive performance, the framework incorporates explainable AI (XAI) techniques, namely Gradient-weighted Class Activation Mapping (Grad-CAM) and Gradientweighted Class Activation Mapping Plus Plus (Grad-CAM++), to enhance model interpretability.These approaches highlight the most significant visual features influencing predictions, thereby providing valuable insights for agronomists and fostering trust in AI-based systems.Experimental results show that the proposed CSA-BWOM optimized CNN achieves classification accuracies of 99.61% and 99.38% on the bean and grape datasets, respectively, outperforming baseline CNN models and exhibiting competitive performance when compared to a few existing approaches.
Why it matches plant phenotyping methods植物葉の病徴を画像から分類するCNN最適化・説明可能AI手法が研究の中心であり、植物病害状態の表現型推定に該当する。
titleExplainable AI-based CNN Optimization Model for Plant Leaf Disease Detection
Identifying the complex leaf disease is a major challenge in crop production. Traditional Capsule Networks face challenges in capturing the complex features associated with various plant diseases, even though they can effectively retain spatial hierarchies. To overcome challenges, this research presents a novel Capsule Networks framework for the identification of leaf disease and its classification. The research proposes a Feedback-Enabled Capsule Routing and a Capsule-Level Attention mechanism. The Feedback-Enabled Capsule Routing method that refines classification outcomes also introduces top-down contextual signals, whereas the Capsule-Level Attention mechanism dynamically weighs capsule outputs based on their relevance. Incorporating this, we also integrated Primary Capsule Squashing and Dynamic Routing. All methods are grounded in formal mathematical definitions. The XAI techniques are integrated to visualize the model's decision-making process for transparency. Empirical evaluations demonstrate the model's effectiveness in achieving classification accuracies of 98.97% and 98.49% in the PlantVillage and the PLD datasets, respectively. This framework addresses the trust gap in AI-driven agricultural diagnostics, allowing for a transparent and reliable method of disease detection in agricultural applications.
Why it matches plant phenotyping methods葉画像から植物病害を分類する新規カプセルネットワークと説明可能AIを開発・評価しており、植物の病害状態の画像ベース推定が中心的な方法論的貢献である。
abstractthis research presents a novel Capsule Networks framework for the identification of leaf disease and its classification.
Agriculture plays a crucial role in the Indian economy. Early detection of plant diseases is very much essential to prevent crop loss and further spread of diseases. Most plants such as apple, tomato, cherry, grapes show visible symptoms of the disease on the leaf. These visible patterns can be identified to correctly predict the disease and take early actions to prevent it. This can be overcome by the use of machine learning and deep learning algorithms. Hence, we are proposing a method that which is detecting the disease of a tomato plant from their leaf images. Here the process is performed with the deep learning algorithms Convolutional Neural Network (CNN), and MobileNet which is a one of the transfer learning method of CNN. Once after training the dataset with the algorithms, the accuracy of algorithms is compared and the images are classified. And the precautions are also provided for the classified plant.
Why it matches plant phenotyping methodsトマト葉画像から病害状態をCNN/MobileNetで推定・分類する手法が研究の中心であり、植物病害フェノタイピングに該当する。
abstractwe are proposing a method that which is detecting the disease of a tomato plant from their leaf images
The prompt identification and precise categorization of chili plant diseases are crucial for promoting sustainable agriculture and reducing crop losses due to pests and pathogens. This research presents an automated detection method using the Single Shot Detector (SSD) framework, with ResNet-50 as the backbone and a Feature Pyramid Network (FPN) to manage multi-scale feature representations. Dataset including 14,248 images of chili plants, categorized into six classes like Leaf Spot, Rotten Fruit, Healthy Fruit, Healthy Leaf, Mosaic Curl, and Yellowing, underwent preprocessing involving segmentation, resizing, and augmentation, followed by a division into 90% training data and 10% testing data. Transfer learning was implemented using a COCO-pretrained SSD ResNet-50 FPN model, enhanced with cosine-decay learning-rate scheduling and momentum optimization. The assessment results indicated an overall accuracy of 92.7%, with the highest F1-scores achieved for Healthy Fruit (0.965) and Rotten Fruit (0.967). Under the COCO evaluation protocol, the model achieved an mAP@0.5 of 91.5% and mAP@[0.5:0.95] of 65.2%. Model ran at approximately 30 FPS on an NVIDIA T4 GPU. Reduced precision values were noted for Leaf Spot (0.866) and Mosaic Curl (0.850), suggesting a propensity for misclassification due to visual similarities among disease symptoms. Nonetheless, all classes attained F1-scores exceeding 0.86, illustrating the robustness of the proposed model. Importantly, the SSD-ResNet-50 approach offers both efficiency and accuracy within a single pipeline, enabling rapid inference practical for real-world applications. These findings emphasize the potential of deep learning-based solutions to strengthen plant disease monitoring systems. In conclusion, SSD with ResNet-50 FPN provides an effective and scalable methodology for the automated identification of chili plant diseases, contributing directly to sustainable agriculture and improved crop management practices.
Why it matches plant phenotyping methods植物の病徴・病害状態を画像から推定する深層学習手法の開発と評価が中心であり、植物フェノタイピング手法として適格。
abstractThis research presents an automated detection method using the Single Shot Detector (SSD) framework, with ResNet-50 as the backbone and a Feature Pyramid Network (FPN) to manage multi-scale feature representations.
Camera-based visual sensing provides a non-destructive and scalable approach for monitoring strawberry diseases and pests in greenhouse environments. However, greenhouse images acquired under practical cultivation conditions often contain early-stage tiny lesions, complex leaf backgrounds, uneven target scales, illumination variations, and partial occlusions, making accurate and efficient visual detection challenging. To address these issues, this study proposes YOLOv8n-DSLW (YOLOv8n enhanced by Dense reuse, Shuffle attention, LSKA-LAMP lightweight modeling, and Wise-IoU optimization), an AI-enabled vision-sensing detection model based on YOLOv8n for tiny strawberry disease and pest detection. Specifically, Shrink Residual Dense Block (ShrinkRDB) dense connection blocks and the C2f with Shuffle Attention (C2fSA) module are introduced to preserve weak lesion textures and suppress background interference in greenhouse visual data. A high-resolution P2 detection layer combined with Wise-IoU (WioU) dynamic regression loss is further incorporated to enhance tiny-target perception and localization. In addition, the Spatial Pyramid Pooling-Fast with Large Separable Kernel Attention (SPPF-LSKA) module strengthens contextual modeling under occlusion and clutter, while Layer-Adaptive Magnitude-based Pruning (LAMP) is adopted to mitigate model redundancy and improve the accuracy-efficiency balance. Experiments on a self-collected greenhouse strawberry disease and pest dataset show that YOLOv8n-DSLW achieves a mean Average Precision at 0.5 IoU threshold (mAP@0.5) of 94.3% and a mAP@0.5:0.95 of 77.5%, outperforming the YOLOv8n baseline. The final model has a parameter count of 4.386 M and a computational cost of 27.6 GFLOPs, achieving a frame rate of 45 FPS on the test workstation. It shows application potential for real-time visual monitoring in greenhouses under controlled data acquisition conditions. The results demonstrate that the proposed method improves tiny lesion detection under dense targets, complex backgrounds, and leaf occlusions, providing an AI-enabled vision-sensing framework for automated strawberry health monitoring in greenhouses. Nevertheless, due to limitations associated with imaging equipment, dataset representativeness, and the inherent constraints of the algorithm, further optimization and validation are required to support large-scale field deployment.
Why it matches plant phenotyping methodsイチゴ葉の病斑を画像から検出・局在化する新規YOLOモデルを開発し、データセット上で性能評価しており、植物病害状態の画像ベース表現型取得が中心である。
abstractthis study proposes YOLOv8n-DSLW (YOLOv8n enhanced by Dense reuse, Shuffle attention, LSKA-LAMP lightweight modeling, and Wise-IoU optimization), an AI-enabled vision-sensing detection model based on YOLOv8n for tiny strawberry disease and pest detection.
Reproduction assets foundThe paper's self-collected greenhouse strawberry disease/pest image dataset (with COCO annotations and train/test splits) is explicitly stated as publicly deposited on GitHub at the allowed URL. No author analysis code or trained model checkpoint is mentioned as publicly available.Dataset · publicThe dataset used in this study, including the training and independent test subsets, has been uploaded to a GitHub repository for dataset verification and is available at: https://github.com/dataset-review-2026/strawberry-dataset (accessed on 26 July 2026).Open asset ↗dataset-review-2026/strawberry-datasetlines:111-131Plant phenotyping relevance match · UnverifiedCrossref · checked 15 Sept 2026
Published30 Jul 2026International Journal of Advanced Research in Science Communication and TechnologyCited by 0 · OpenAlex ↗
Agriculture continues to be one of the principal contributors to the economy and food security of developing nations, yet farmers regularly face difficulties such as unpredictable weather, variable soil conditions, and crop diseases that reduce quality and income. This paper presents a Crop Prediction and Plant Disease Detection System that integrates machine learning and deep learning techniques within a single web-based platform. The system accepts agricultural parameters — nitrogen, phosphorus, potassium, temperature, humidity, pH, and rainfall — and applies a Random Forest regression model to estimate the expected crop. In parallel, it allows farmers to upload images of crop leaves, which are pre-processed and classified by a Convolutional Neural Network (CNN) to identify plant diseases and recommend suitable treatment. The application is built using ASP.NET Core for the user-facing interface, authentication, and dashboard, while a Python-based REST API hosts the machine learning and deep learning models; Microsoft SQL Server is used for persistent storage of user data, predictions, and disease records. The proposed system combines two traditionally separate functions — crop estimation and disease diagnosis — together with treatment recommendations and prediction history, into a single decision-support tool for precision agriculture, and was validated through unit, integration, and system-level testing
Why it matches plant phenotyping methods葉画像からCNNで植物病害を推定する機能が意思決定支援システムの主要構成要素であり、植物の病害状態を画像ベースで評価しているため含める。
abstractit allows farmers to upload images of crop leaves, which are pre-processed and classified by a Convolutional Neural Network (CNN) to identify plant diseases and recommend suitable treatment
Introduction Timely and accurate detection of plant diseases is essential for ensuring global food security and supporting sustainable agriculture. Conventional diagnostic approaches, such as manual inspection and laboratory testing, are often time-consuming, labor-intensive, and impractical for large-scale or remote agricultural environments. Although deep learning models, particularly Convolutional Neural Networks (CNNs), have significantly improved automated plant disease classification, they often lack interpretability and struggle to generalize under diverse field conditions. Methods This study proposes AgriX-SENet, an explainable deep learning framework that integrates Squeeze-and-Excitation (SE) blocks with a DenseNet121 backbone to enhance disease classification performance. The SE blocks recalibrate channel-wise feature responses to emphasize disease-relevant information while suppressing background noise. To improve model transparency, Grad-CAM, SHAP, and LIME were incorporated to provide visual and feature-level explanations of the model’s predictions. The framework was trained and evaluated using the Plant Pathology 2020 dataset containing four classes: healthy, rust, scab, and multiple diseases. Results AgriX-SENet achieved a training accuracy of 97.47% and a validation accuracy of 95.07%, outperforming fourteen state-of-the-art deep learning models. The classification report demonstrated high precision and recall across most disease categories, although the scab class exhibited comparatively lower recall, indicating an opportunity for further improvement. The explainability analyses consistently showed that the model focused on pathologically relevant regions of leaf images, validating the reliability of its predictions. Discussion The proposed AgriX-SENet framework effectively combines high classification performance with model interpretability, addressing a key limitation of existing CNN-based plant disease detection systems. Its ability to provide accurate and explainable predictions makes it a promising solution for scalable agricultural diagnostics. Future work will focus on improving classification performance for challenging disease categories and optimizing the framework for deployment on mobile and edge computing devices to enable real-time field applications.
Why it matches plant phenotyping methods葉画像から植物病害状態を推定する説明可能な深層学習フレームワークを開発・評価しており、植物表現型取得・判定手法が中心である。
abstractThis study proposes AgriX-SENet, an explainable deep learning framework that integrates Squeeze-and-Excitation (SE) blocks with a DenseNet121 backbone to enhance disease classification performance.
Reproduction assets foundThe paper trains and evaluates AgriX-SENet on the public Plant Pathology 2020 (FGVC7) Kaggle image dataset, which is the paper-specific plant image input for its disease-classification measurements. No author analysis code, trained model checkpoints, or supplementary code/data deposit is mentioned; the data statement (Dataset · publicPlant Pathology 2020 - Fgvc7 . Available online at: https://www.kaggle.com/competitions/plant-pathology-2020-fgvc7/data .Open asset ↗Kaggle · plant-pathology-2020-fgvc7lines:895-974Plant phenotyping relevance match · UnverifiedEurope PMC · Crossref · checked 5 Sept 2026
Abstract Deep learning has achieved remarkable success in rice disease diagnosis; however, existing methods often suffer from limited interpretability and poor robustness against open-world environmental noise. To address these challenges, this study proposes the Knowledge-Guided Multi-Task Rice Network (MTRNet) built upon a ResNet-50 backbone. Unlike conventional "black-box" models, MTRNet employs expert knowledge injection via a phytopathological matrix to explicitly disentangle disease features into Shape, Color, and Location attributes within a multi-head architecture. Furthermore, to mitigate false positives in complex field scenarios, a non-parametric Cascade Inference System (CIS)—comprising a biological grayscale filter and a visual consistency check—is introduced for robust Out-of-Distribution (OOD) detection and anomaly rejection. Experiments on a benchmark dataset of 5,932 field images, which primarily comprises four main rice diseases (Rice Leaf Blast, Brown Spot, Bacterial Leaf Blight, and Tungro), demonstrate that MTRNet achieves a diagnostic accuracy of 99.83%. Crucially, in an open-world robustness evaluation involving 1,000 non-agricultural noise samples, the proposed system achieved an 81.80% OOD rejection rate. By balancing diagnostic accuracy with structural transparency, this framework effectively narrows the gap between laboratory benchmarks and real-world agricultural applications.
Why it matches plant phenotyping methodsイネ病害の画像から病徴を診断する深層学習・OOD検出手法を提案し、実画像データで性能評価しており、植物の病害状態の取得・推定が研究の中心である。
abstractthis study proposes the Knowledge-Guided Multi-Task Rice Network (MTRNet) built upon a ResNet-50 backbone.
Corn stunt is one of the most important diseases affecting maize (Zea mays L.) production in tropical regions of the Americas. The disease is caused by a complex of pathogens transmitted by the corn leafhopper (Dalbulus maidis), and its predominantly quantitative inheritance complicates the identification of tolerant genotypes under field conditions. In this context, we aimed to perform a comprehensive phenotypic stratification of corn stunt tolerance in a tropical public maize diversity panel and to identify contrasting inbred lines for breeding and genetic studies. A total of 360 inbred lines were evaluated under natural infection using three complementary disease-response traits: survivor plant health score (SPHS), proportion of survivor plants (PSP), and whole-plant health score (WPHS). Multi-trait mixed-model analyses revealed significant genotypic variation, moderate to high broad-sense heritability, and significant genotype × environment interactions for all evaluated traits. A multi-trait index (MSI), calculated from standardized best linear unbiased predictions (BLUPs), successfully integrated the three phenotypic components and enabled robust stratification of the diversity panel, identifying 60 highly tolerant and 60 highly susceptible inbred lines. Further, a genomic principal component analysis demonstrated that these phenotypic extremes were distributed across both tropical and subtropical germplasm, indicating that tolerance is not restricted to a single genetic background. The proposed phenotypic framework provides a robust and reproducible strategy for characterizing quantitative disease tolerance, identifying valuable parental germplasm, and establishing well-defined phenotypic extremes for future investigations of the genetic architecture of corn stunt tolerance.
Why it matches plant phenotyping methods複数の植物病害応答形質を統合する統計的フェノタイピング枠組みと指標を中核として、耐性の再現可能な層別化手法を提示しているため。
abstracta comprehensive phenotypic stratification of corn stunt tolerance
Plant phenotyping plays a critical role in understanding plant health and improving agricultural productivity by enabling quantitative analysis of disease-related physiological characteristics.Among these, leaf diseases significantly impact crop yield and quality, necessitating accurate and automated phenotyping approaches.Traditional phenotyping methods rely on manual inspection or handcrafted feature extraction, which are time-consuming, prone to human error, and lack scalability under diverse environmental conditions.This study introduces a deep learning (DL)-based approach for image-based plant phenotyping, focusing on the classification of disease-affected traits.The developed method integrates segmentation-based region extraction, dual-branch feature learning, and attention-based feature fusion.Initially, input images are preprocessed and passed through a TransUNet-based segmentation module to isolate phenotypically relevant leaf regions while suppressing background interference.Both the original image and the segmented region are then processed using a RegNet-based feature extraction network to capture global structural information and localized disease-specific characteristics.The extracted features are fused using an attention-based mechanism, followed by fully connected layers for multiclass classification.Experimental results obtained on the controlled PlantVillage grape leaf dataset, which serves as a standardized benchmark for plant disease classification, demonstrate an overall classification accuracy of 97.8%, with precision, recall, and F1-score values of 97.7%, 97.9%, and 97.8%, respectively.In addition, the segmentation module achieves an Intersection over Union (IoU) of 94.1% and a Dice score of 96.8%, confirming its effectiveness in isolating relevant phenotypic regions.
Why it matches plant phenotyping methods植物病害形質の画像取得・領域抽出・分類を中核とする深層学習フェノタイピング手法の開発と性能評価であり、方法が中心的です。
abstractThis study introduces a deep learning (DL)-based approach for image-based plant phenotyping, focusing on the classification of disease-affected traits.
Plant phenotyping relevance match · UnverifiedCrossref · Europe PMC · checked 14 Sept 2026
Abstract Effective plant disease phenotyping is crucial for resistance breeding, but traditional visual assessment is often inaccurate and inefficient. This is particularly challenging when breeding lettuce (Lactuca sativa) for resistance to downy mildew, given the obligate biotrophic lifestyle of the causal pathogen Bremia lactucae. We discovered that B. lactucae-infected lettuce exhibits patches of increased blue-green fluorescence (BGF) under UV-A excitation from 6 d post-inoculation, preceding visible symptoms. Co-localization of BGF with hyphae, visualized with trypan blue, indicates that BGF is induced by downy mildew colonization. We therefore investigated its potential for non-invasive disease detection and quantification, as well as the underlying physiological changes. Using a custom imaging system, we demonstrate that BGF leaf area correlates with downy mildew severity and can be automatically quantified via a U-Net-based convolutional neural network, enabling early, objective disease assessment. Exploring transcriptomic and metabolomic changes associated with BGF, we found that induction of the phenylpropanoid pathway led to accumulation of caffeoylquinic acids, whose fluorescence spectra overlap with that of BGF tissue, supporting the hypothesis that these compounds contribute to the fluorescence signal. BGF imaging offers a powerful tool for phenotyping in lettuce breeding and for identifying quantitative resistance traits that support durable downy mildew resistance.
Why it matches plant phenotyping methods青緑蛍光のカスタム撮像とU-Netによる自動定量を開発し、レタスべと病の重症度を非侵襲・早期に評価する方法が研究の中心である。
abstractUsing a custom imaging system, we demonstrate that BGF leaf area correlates with downy mildew severity and can be automatically quantified via a U-Net-based convolutional neural network, enabling early, objective disease assessment.
Agriculture plays a pivotal role in ensuring global food security, economic stability, and sustainable development. Plant diseases significantly reduce agricultural productivity, resulting in substantial economic losses and threatening food supply worldwide. Early and accurate identification of plant leaf diseases enables timely intervention, minimizes crop damage, and enhances agricultural yield. Traditional disease diagnosis relies heavily on visual inspection by agricultural experts, making the process labor-intensive, subjective, and unsuitable for large-scale deployment. Recent advances in artificial intelligence, particularly deep learning, have transformed plant disease diagnosis by enabling automatic feature extraction and highly accurate image-based classification. This review presents a comprehensive analysis of recent developments in deep learning techniques for plant leaf disease identification. Various convolutional neural network (CNN) architectures, including AlexNet, VGGNet, ResNet, DenseNet, EfficientNet, MobileNet, Inception, and Xception, are critically reviewed along with modern transformer-based models such as Vision Transformer (ViT), Swin Transformer, and hybrid CNN–Transformer frameworks. The paper also examines transfer learning strategies, object detection methods including YOLO and Faster R-CNN, and semantic segmentation approaches such as U-Net and DeepLabV3+. Publicly available benchmark datasets, including PlantVillage, PlantDoc, AI Challenger, Cassava Leaf Disease, and Rice Leaf Disease datasets, are discussed in terms of dataset diversity, annotation quality, and practical applicability. Furthermore, image preprocessing techniques, data augmentation methods, evaluation metrics, and deployment considerations for mobile and edge devices are comprehensively reviewed. The paper identifies current research challenges, including dataset imbalance, environmental variability, model interpretability, computational complexity, and limited real-world generalization. Finally, emerging research directions such as explainable artificial intelligence, federated learning, multimodal learning, self-supervised learning, lightweight architectures, and edge AI are discussed to provide future research opportunities. This review serves as a valuable resource for researchers, practitioners, and agricultural technologists interested in developing robust, scalable, and intelligent plant disease identification systems.
Why it matches plant phenotyping methods植物葉の病害状態を画像から識別する深層学習手法を中心に、モデル、データセット、評価、展開を体系的にレビューしており、植物表現型計測手法のレビューに該当する。
abstractThis review presents a comprehensive analysis of recent developments in deep learning techniques for plant leaf disease identification.
Accurate and quick detection of plant leaf diseases is essential for precision agriculture to intervene promptly and boost crop yields. A new deep learning model called ResVNet has been introduced in this study. It combines the powerful local feature detection of ResNet152 with the global attention capabilities of Vision Transformer (ViT) and utilises Low-Rank Adaptation (LoRA) to accelerate fine-tuning. The PlantVillage dataset, which contains both healthy and diseased tomato samples, was used to train and test ResVNet. Experimental evaluation on the PlantVillage tomato dataset using stratified 5-fold cross-validation demonstrates that the proposed ResVNet model achieves a mean classification accuracy of 97.45%, along with superior macro-precision, macro-recall, and macro-F1 scores compared to existing deep learning architectures. The results of the confusion matrix and the ROC analysis validate its discriminatory power. The results highlight the potential of architectures strengthened with transformers in agricultural diagnostics. For real-time disease detection in the field, ResVNet is perfect for edge device deployment on drones and smartphones thanks to its high accuracy and adaptability. The application of Explainable AI (XAI) technologies for interpretability, integration with the Internet of Things (IoT), and multi-crop classification will all be explored in future studies. We will also look into model compression approaches so we can deploy efficiently in low-resource settings without sacrificing performance.
Why it matches plant phenotyping methods植物葉の病害状態を画像から分類する深層学習手法を開発し、PlantVillageで交差検証して性能評価しているため、植物フェノタイピング手法が中心である。
abstractA new deep learning model called ResVNet has been introduced in this study.
Introduction Banana production is increasingly threatened by fungal diseases such as Fusarium wilt and Black Sigatoka, posing severe risks to food security and agricultural economies. Recent image-based approaches using deep learning have shown high predictive capacity for plant disease recognition; however, their limited transparency, calibration uncertainty, and sensitivity to domain shifts can restrict their use in decision-support workflows that require auditability. Methods This study proposes an interpretable and calibrated Artificial Intelligence framework for multiclass banana disease-pattern characterization based on radiomic feature analysis of RGB leaf images. Radiomic features were extracted from HSV-segmented banana leaf regions, resulting in a dataset of 14,763 samples characterized by 103 quantitative descriptors and labeled as Healthy, Sigatoka, or Fusarium wilt race 1. Results Among the evaluated radiomics classifiers, the calibrated Random Forest achieved accuracy = 0.85, balanced accuracy = 0.84, macro-F1 = 0.84, and macro ROC-AUC OvR = 0.95 on the held-out test set. Bootstrap analysis yielded 95% confidence intervals of [0.8406, 0.8691] for accuracy and [0.8306, 0.8606] for balanced accuracy. Three deep learning baselines trained on the same partition achieved higher predictive performance: MobileNetV3 with accuracy = 0.96, macro-F1 = 0.95, and macro ROC-AUC OvR = 0.97; EfficientNet with accuracy = 0.96, macro-F1 = 0.97, and macro ROC-AUC OvR = 0.96; and ResNet-18 with accuracy = 0.96, macro-F1 = 0.96, and macro ROC-AUC OvR = 0.96. Discussion The CNNs produced strong classification performance on the evaluated repositories, and the radiomics approach demonstrated to be a complementary interpretable and explainable calibrated reference model. SHAP, LIME, permutation importance, accumulated local effects, calibration curves, and Brier score decomposition supported feature-level inspection of the final model.
Why it matches plant phenotyping methodsバナナ葉のRGB画像から病害状態を抽出・分類する画像解析および説明可能な機械学習手法が研究の中心であり、植物病害表現型の評価性能も検証している。
abstractThis study proposes an interpretable and calibrated Artificial Intelligence framework for multiclass banana disease-pattern characterization based on radiomic feature analysis of RGB leaf images.
Leaf disease diagnosis needs models that are accurate enough for agronomic use yet small enough for constrained computing settings. This study examines a late-attention MobileNetV2 design in which one Convolutional Block Attention Module (CBAM) is inserted between the last MobileNetV2 convolutional map and global average pooling. The experiments use 54,306 controlled-background PlantVillage images spanning 38 classes. Under a uniform saved-model re-evaluation, MobileNetV2 + CBAM obtained 97.17% accuracy and 97.15% weighted F1-score, whereas MobileNetV2 obtained 96.78% and 96.73%. On the converted models, paired testing gave a 0.64-percentage-point accuracy advantage for the CBAM variant (95% CI: 0.31–0.96; exact McNemar p
Why it matches plant phenotyping methods植物葉の病徴を画像から検出する軽量深層学習モデルを開発・比較しており、植物病害状態の画像ベース表現型取得が中心である。
titleAn Efficient Attention-Enhanced MobileNetV2 Framework for Plant Disease Detection on Resource-Constrained Devices
Rice leaf diseases pose a major threat to crop productivity and global food security. Therefore, rapid and accurate disease diagnosis is essential for effective crop management. Despite the advancements made by deep learning algorithms in automated disease detection, the majority of current deep learning-based models are built and evaluated on single-source datasets. Therefore, the generalization capability of these models is still questionable. In order to overcome this problem, this paper presents an interpretable deep learning approach for classifying diseases in rice leaves using ConvNeXt-Tiny and Grad-CAM. The proposed semantic class normalization technique is used to harmonize the heterogeneous data classes to form a seven-class classification system. The model performance was analyzed based on two available public datasets for rice leaf disease and a combination of both. After performing five individual runs, the average classification accuracies were calculated to be 99.13±0.37%, 95.28±0.63%, and 97.27±0.41% for Datasets 1, 2, and the combined dataset, respectively. The confusion matrix analysis indicated minor misclassification errors in the form of false positives for the disease classes which have similarities in appearance. The training and validation curves showed consistent learning with minimum overfitting. Moreover, Grad-CAM analysis confirmed the focus of the model on the disease-specific regions. These results collectively show that the combination of transfer learning, semantic class harmonization, and explainable AI is a stable platform to conduct automated rice disease detection. It is evident from these outcomes that reliable performance can be achieved even under heterogeneous imaging conditions. Consequently, there exists great potential for this approach in agricultural decision-support systems.
Why it matches plant phenotyping methodsイネ葉の病害状態を画像から分類・推定する深層学習手法を開発し、異質データセットで性能評価しているため、植物フェノタイピング手法が中心です。
abstractthis paper presents an interpretable deep learning approach for classifying diseases in rice leaves using ConvNeXt-Tiny and Grad-CAM.
Plant disease detection is critical for sustainable agriculture and food security. While deep learning models achieve high accuracy in leaf disease classification, their black box nature poses limitations for trust and adoption among agricultural practitioners. This study presents a comparative evaluation of three convolutional neural network architectures (ConvNeXt-Tiny, MobileNetV2, and VGG16) for classifying potato, maize, and pepper leaf diseases, with emphasis on explainability through Gradient-weighted Class Activation Mapping (Grad-CAM). The experimental results demonstrate that ConvNeXt-Tiny achieves 99-100% accuracy across all plant species, MobileNetV2 attains 97-100% accuracy with lower computational requirements, and VGG16 yields 97-99.5% accuracy. Grad-CAM visualizations reveal that modern architectures precisely focus on lesion regions, whereas older models occasionally attend to irrelevant features such as leaf veins and edges. Misclassification analysis identifies shadows and natural leaf patterns as primary error sources. This research demonstrates that explainable artificial intelligence is not merely complementary but essential for developing trustworthy agricultural decision support systems.
Why it matches plant phenotyping methods植物葉の病変領域を画像から分類・可視化する手法を比較評価しており、病害状態の表現型抽出が研究の中心です。
abstractThis study presents a comparative evaluation of three convolutional neural network architectures (ConvNeXt-Tiny, MobileNetV2, and VGG16) for classifying potato, maize, and pepper leaf diseases, with emphasis on explainability through Gradient-weighted Class Activation Mapping (Grad-CAM).
Abstract Pests and diseases are major constraints to cereal production, reducing crop yield, farm profitability, and food security worldwide. Timely detection of crop health threats and accurate assessment of infection severity are essential for effective crop protection, yet conventional field scouting remains labor-intensive, subjective, and unsuitable for real-time decision-making. Although recent advances in the Internet of Things (IoT) and deep learning have enhanced automated crop monitoring, most existing approaches focus on single-task disease classification and provide limited support for severity-aware management. This study proposes ResMDCL-PDM (Residual Network with Multi-Dimensional Compensation Layer for Pest and Disease Management), an IoT-enabled multi-task deep learning framework for precision pest and disease management in maize and rice production. The framework combines field-based environmental sensing with a modified ResNet-50 architecture enhanced by a Multi-Dimensional Compensation Layer (MDCL) to jointly identify crop species, classify pest and disease categories, and estimate infection severity. Field images collected from maize and rice farms at the Federal University of Agriculture, Abeokuta, Nigeria, were integrated with publicly available benchmark datasets. Following preprocessing and data augmentation, 8,556 annotated images were used for model development and evaluation. The proposed framework achieved an overall classification accuracy of 97.8% , outperforming AlexNet, VGG16, MobileNetV3, DenseNet121, EfficientNet-B0, and the baseline ResNet-50. High precision, recall, and F1-score, together with ablation analysis, confirmed the effectiveness of the proposed MDCL. The results demonstrate that integrating IoT-enabled monitoring with multi-task deep learning provides reliable, severity-aware decision support for targeted crop protection and offers a practical, scalable solution for sustainable precision agriculture.
Why it matches plant phenotyping methods植物画像から病害・害虫カテゴリーと感染重症度を推定するIoT・深層学習フレームワークの開発と評価が中心であり、感染植物の状態を直接測定する方法論的研究である。
abstractThis study proposes ResMDCL-PDM (Residual Network with Multi-Dimensional Compensation Layer for Pest and Disease Management), an IoT-enabled multi-task deep learning framework for precision pest and disease management in maize and rice production.
Plant diseases have long been considered a major threat to global food production systems. Therefore, early diagnosis is vital to mitigate the risk of these diseases. This task can be challenging, as the number of harmful diseases is substantial. One technology that has gained widespread interest is artificial intelligence, specifically deep learning, which is used to identify plant diseases using leaf patterns. This paper presents two deep learning models, a custom CNN model and a transfer learning model based on the DenseNet-121 architecture. Experiments were carried out using the PlantCity dataset, which consists of twelve subsets of diverse crop species representing fruits, vegetables, and grains with variations among the subsets, including the number of classes, the subset sizes, class distribution, and visual complexity of disease symptoms. The two models were evaluated using multiple metrics, including accuracy, loss, precision, recall, and F1-score. Explainable AI using the LIME technique was deployed to better interpret the acquired results. Results showed that the developed transfer learning model based on DenseNet-121 had superior performance over the CNN model, with accuracies ranging from 86% to 99% across eleven experimented crops. In order to perform an independent experimental validation for the developed model, future work will focus on constructing a local crop dataset captured from Iraqi fields to evaluate the developed models based on the local environment.
Why it matches plant phenotyping methods葉画像から植物病害状態を推定する深層学習手法を開発し、複数作物・指標で性能評価しているため、植物フェノタイピング手法が中心である。
abstractThis paper presents two deep learning models, a custom CNN model and a transfer learning model based on the DenseNet-121 architecture.
The Florida sugarcane industry is transitioning from manual to mechanical planting systems that use comparatively smaller seedcane pieces (billets) as planting material. A major limitation of mechanical planting is the increased seedcane requirement owing to mechanical damage and the increased vulnerability of seedcane pieces to soilborne pathogens that cause sett rots, particularly pineapple sett rot caused by Thielaviopsis spp. Current sugarcane breeding programs in Florida screen for major diseases, such as rusts, smut, ratoon stunting, and viruses, early in the breeding process but not for pineapple sett rot. This study aimed to isolate and identify Thielaviopsis spp. in the Everglades Agricultural Area (EAA), develop a single-bud inoculation protocol for greenhouse-based disease screening, and phenotype the current widely grown sugarcane varieties in Florida against Thielaviopsis spp. The pathogen was confirmed as T. ethacetica , consistent with previous reports from the EAA. A reproducible inoculation method was established and validated through symptom assessment, pathogen reisolation, and molecular confirmation. Using this protocol, six widely grown Florida sugarcane varieties showed significantly reduced germination (by more than 50%) and reduced above- and belowground morphological characteristics under infection, indicating susceptibility. Varietal differences were observed, with CP 03-1912 showing the highest mortality percentage and reduced growth under T. ethacetica infection. These findings highlight the vulnerability of current varieties to pineapple sett rot, especially under mechanical planting systems where smaller seedcane pieces are used. Furthermore, the developed inoculation protocol provides a scalable tool for early stage evaluation of resistance in breeding programs, offering potential to accelerate the development of varieties better adapted to mechanical planting.
Why it matches plant phenotyping methodsサトウキビの病害抵抗性を評価するための単芽接種・症状評価プロトコルを開発し、再現性を検証した研究であり、植物病害表現型の取得法が中心である。
abstractdevelop a single-bud inoculation protocol for greenhouse-based disease screening
Early and accurate identification of plant diseases is essential for improving crop productivity and ensuring food security. Many existing deep learning-based plant disease classification methods rely solely on leaf images collected from a controlled environment, which limits their applicability in real-world agricultural conditions where symptoms may be visually unclear and influenced by environmental factors. To address these challenges, this study discusses AgriFusionNet, a context-aware multimodal deep learning framework that integrates leaf images, textual symptom descriptions, and environmental data for robust plant disease classification. The proposed architecture employs EfficientNet-B0 for visual feature extraction, BERT for semantic representation of symptom descriptions, and a lightweight multilayer perceptron for modeling environmental factors such as temperature, humidity, rainfall, and soil moisture. Features from all three modalities are fused into a unified representation to train the CNN model. The model is trained and tested upon the Context-Aware Multimodal Augmented PlantVillage dataset covering 38 plant diseases and healthy classes. Experimental results show that AgriFusionNet gives an overall accuracy of 98.94% on the dataset Context-Aware Multimodal Augmented PlantVillage, with competitive precision and recall and F1-score. The multimodal framework facilitates the co-learning of visual, semantic, and contextual environmental representations and the analyses of the confusion matrix and feature interactions give insights into cross-modal relationships. The proposed approach aims to explore context-aware multimodal representation learning for agricultural AI applications, with emphasis on integrating complementary visual, semantic, and contextual information.
Why it matches plant phenotyping methods葉画像を中心に、症状記述と環境情報を統合して植物病害状態を分類する手法を開発・評価しており、植物フェノタイピング手法が中心である。
abstractthis study discusses AgriFusionNet, a context-aware multimodal deep learning framework that integrates leaf images, textual symptom descriptions, and environmental data for robust plant disease classification.
Reproduction assets foundThe paper's data availability statement points to the Context-Aware Multimodal Augmented PlantVillage dataset (leaf images, symptom text, environmental data used for the phenotyping/classification analysis) deposited publicly on IEEE Dataport with a DOI matching an allowed URL.Dataset · publicPublicly available datasets were analyzed in this study. This data can be found here: Dataset. IEEE Dataport. https://dx.doi.org/10.21227/9jat-r836 [Accessed on August 2025].Open asset ↗IEEE Dataport · 10.21227/9jat-r836lines:1029-1047Code / dataset availability confirmedEurope PMC · checked 5 Sept 2026
Background Covered smut in barley caused by Ustilago hordei leads to yield reduction and quality loss of stored grains and is especially challenging in organic production. However, screening for resistance remains challenging. The goal of our research was to evaluate protocols for screening covered smut in barley under normal and speed breeding conditions that could be scaled up for breeding purposes. We considered favorable pathogen growth conditions, a sufficient sample size to detect differences among genotypes through a power analysis, sources of disease escape or avoidance, and the infection effect on agronomic traits. Results In the first experiment, twenty genotypes treated with various inoculum concentrations were screened for disease incidence under a speed breeding system. Generally, low infection levels were found, likely due to disease escape or avoidance. Based on a power analysis, we modified the protocol to include more plants and improved pathogen growth conditions under a normal greenhouse system. With the modified protocol, the incidence of covered smut was significantly different among genotypes. The protocol also reduced the number of plants required to detect at least one infected plant. Artificial inoculation significantly decreased germination rates while head emergence, days to heading, and plant height were affected by disease infection in the most susceptible genotypes. We also found that covered smut incidence varied with tiller emergence order. The genotypes 'DH160779' (RES check), PI 270630', 'CIho15270', and 'MTV-color-158' presented potential resistance to covered smut. Conclusion The protocol has a high power to differentiate moderately resistant barley genotypes and we confirmed that specific agronomic traits were affected by disease incidence in susceptible genotypes.
Why it matches plant phenotyping methodsオオムギ病害の抵抗性スクリーニングプロトコルを評価・改良し、検出力と遺伝子型間の識別性能を検証しているため、植物病害表現型の取得法が研究の中心です。
abstractThe goal of our research was to evaluate protocols for screening covered smut in barley under normal and speed breeding conditions that could be scaled up for breeding purposes.
Reproduction assets foundThe paper's disease-screening and agronomic-trait measurement data are publicly deposited on Zenodo, as stated in the Availability of data and materials section. No author analysis code or trained models are explicitly deposited.Dataset · publicThe data used and/or analyzed in the current study are available through the Zenodo, which is available at Gopinathan, G. (2025). Optimization of a protocol for covered smut in barley [Dataset]. Zenodo. [ 47 ] (https:/doi.org/ https://doi.org/10.5281/zenodo.17906264 ).Open asset ↗Zenodo · 10.5281/zenodo.17906264lines:190-223Plant phenotyping relevance match · UnverifiedCrossref · checked 5 Sept 2026
Abstract Detecting crop diseases early and responding promptly is vital for protecting agricultural productivity. It also helps maintain the quality and quantity of yields and reduces the risk of disease transmission to humans and livestock. Effective disease management is therefore critical to ensuring both global and local food security. However, traditional methods often based on visual inspection and delayed human judgment, are typically insufficient for identifying diseases at an early stage. Recent developments in Artificial Intelligence (AI) and the Internet of Things (IoT) offer new opportunities to address these challenges. By integrating IoT sensor networks with AI techniques such as machine learning and deep learning, it becomes possible to monitor plant health in real time and detect diseases with greater accuracy. This review explores the strengths and limitations of current AI-enabled IoT solutions in agriculture. It highlights how these systems leverage large-scale data and advanced image processing to outperform conventional methods in terms of speed, precision, and efficiency. Such improvements can significantly reduce crop losses and support more sustainable agricultural practices. Finally, the paper reviews key research trends, identifies current challenges, and outlines future directions in the field. It emphasizes the transformative potential of smart agriculture in advancing plant disease management and promoting environmentally responsible food production. This systematic review was conducted in strict accordance with the Preferred Reporting Items for Systematic Reviews and Meta-Analyses (PRISMA) 2020 guidelines, synthesizing a final selection of 152 peer-reviewed papers. The overarching aim is to critically evaluate and map literature published between 2015 and 2026 using a systematic approach that addresses the integration of the IoT, AI, Machine Learning (ML), Deep Learning (DL), Convolutional Neural Networks (CNN), sensor technologies, and sustainable agricultural practices in the context of plant disease detection.
Why it matches plant phenotyping methods植物病害の症状・健康状態をAI、画像処理、IoTセンサーで検出する手法を主題とした系統的レビューであり、植物フェノタイピング手法のレビューに該当する。
titleA comprehensive review of artificial intelligence and Internet of Things integration based plant disease detection for sustainable agriculture
Field / plotLeafObject detectionStress / disease detectionDisease symptoms / severity
Plant diseases are generally caused by pest, insects, pathogens and decrease the productivity to large scale if not controlled within time. Agriculturists are facing lose due to various crop diseases. It becomes tedious to the cultivators to monitor the crops regularly when the cultivated area is huge that is in acres. The proposed system provides the solution for regularly monitoring the cultivated area and provides the automated disease detection using remote sensing images. The proposed system intimates the agriculturist about the crop diseases to take further actions. The objective of the proposed system is to early detection of diseases as soon as it starts spreading on the outer layer of the leaves. The proposed system works in two phases: the first phase deals with training data sets. This includes, training both healthy and as well as diseased data sets. The second phase deals with monitoring the crop and identifying the disease using Canny?s edge detection algorithm.
Why it matches plant phenotyping methods植物葉の画像から病害状態を自動検出するコンピュータビジョン手法が研究の中心であり、植物の病害表現型を直接推定しているため。
abstractThe proposed system provides the solution for regularly monitoring the cultivated area and provides the automated disease detection using remote sensing images.
Cotton leaf diseases significantly affect crop productivity, fiber quality, and agricultural sustainability, making early and accurate disease diagnosis essential for effective crop management. Manual disease identification is time-consuming, subjective, and dependent on expert knowledge, highlighting the need for automated and intelligent diagnostic systems. This study proposes a CNN-based deep learning framework for automated multiclass classification of cotton leaf diseases using digital image analysis. The proposed framework is trained on a curated dataset comprising healthy and diseased cotton leaf images representing multiple disease categories. CNN architecture performs hierarchical feature extraction, automatically learning discriminative spatial representations from input images without manual feature engineering. The network is trained for 100 epochs using optimized hyperparameters to achieve robust feature learning while ensuring high generalization capability. Model performance is quantitatively evaluated using standard classification metrics, including accuracy, precision, recall, F1-score, and confusion matrix analysis, providing a comprehensive assessment of classification effectiveness. Experimental results demonstrate that the proposed framework achieves reliable disease recognition with high classification accuracy and minimal inter-class confusion, validating the effectiveness of CNN-based feature learning for agricultural image analysis. The automated system enables rapid and accurate disease diagnosis, supporting timely intervention, optimized crop protection strategies, and improved decision-making in precision agriculture. Future work will focus on improving model robustness through the integration of larger and more diverse datasets, advanced data augmentation techniques, transfer learning, and hybrid deep learning architectures. Furthermore, deployment of the proposed framework on mobile, edge, and web-based platforms, together with IoT technologies, can facilitate real-time field monitoring and disease surveillance. Overall, the proposed CNN framework provides a scalable, computationally efficient, and intelligent solution for automated cotton leaf disease classification, contributing to the advancement of AI-driven precision agriculture and sustainable crop management.
Why it matches plant phenotyping methodsワタ葉の病徴を画像から分類するCNN手法の開発と性能評価が研究の中心であり、植物の病害状態を直接推定するため。
abstractThis study proposes a CNN-based deep learning framework for automated multiclass classification of cotton leaf diseases using digital image analysis.
Abstract Chili is an important economic and nutritional crop with a relatively limited availability of different disease-resistant varieties. Leaf diseases, including those caused by fungi, bacteria, viruses, pests, or nutritional deficiencies, significantly compromise production and crop quality. Early detection of these diseases is key to reducing yield loss; however, traditional visual examinations are limited by time constraints, human subjectivity, and low detection sensitivity at early stages of infection. To overcome these challenges, this study proposes a deep learning–based framework for early multi-class detection of chili leaf diseases using convolutional neural networks (CNNs). A real-field dataset comprising 16,392 high-resolution images of chili leaves across six disease and healthy classes was collected from multiple regions of Bangladesh. The dataset was preprocessed, augmented, and split into training and validation sets using an 80:20 ratio. Five pre-trained CNN architectures—DenseNet121, EfficientNetB3, MobileNetV2, ResNet50, and InceptionV3 were evaluated using a transfer learning strategy. Experimental results demonstrate that MobileNetV2 achieved the best performance, attaining an overall classification accuracy of 96%. The results indicate that the proposed system demonstrates strong generalization capability and effectively discriminates visually similar chili leaf diseases. This work can be considered a valuable application in precision agriculture, providing an efficient, automated, and practical approach for in situ early diagnosis of chili leaf diseases through smart farm management.
Why it matches plant phenotyping methods唐辛子葉の病害状態を画像から分類するCNN手法の開発・比較評価とデータセット構築が研究の中心であり、植物病害フェノタイピングに該当する。
abstractA real-field dataset comprising 16,392 high-resolution images of chili leaves across six disease and healthy classes was collected from multiple regions of Bangladesh.
This dataset contains images of Manalagi apple diseases from Indonesia. Data collection was conducted from August 2024 to June 2026. Data were collected in apple orchards. All images were captured under natural environmental conditions. A total of 1168 unique Manalagi apple specimens were successfully documented. The specimens consisted of both healthy and diseased fruit. This dataset comprises four classes: Healthy, Anthracnose, Black Pox, and Powdery Mildew. Each specimen was observed and photographed directly. The documentation process yielded approximately 5100 raw images. The images were captured using various smartphone cameras and DSLR cameras. Each device has different camera specifications. The image size depends on the device used. Images that passed quality inspection were selected for the next stage. Each fruit specimen is cropped from the selected raw image. Each image was then labeled according to its disease class. The image size was standardized to 1024 × 1024 pixels. All images were saved in JPEG format. The curation process yielded 482 images. Each image represents a distinct fruit specimen.
Why it matches plant phenotyping methodsリンゴ果実の健全・病害状態を画像で記録し、分類用データセットとして構築・キュレーションした研究であり、植物病害表現型の取得方法と再利用可能なデータセットが中心です。
titleImage dataset of manalagi apple fruits for multi-class disease classification using deep learning.
Reproduction assets foundThe paper is a Data in Brief article describing a public Mendeley Data repository of Manalagi apple fruit disease images (raw, curated, and augmented), directly usable for plant disease phenotyping/classification.Dataset · publicRepository name: Mendeley Data
Data identification number: DOI: 10.17632/9zgkwwv9j8.6
Direct URL to data: https://data.mendeley.com/datasets/9zgkwwv9j8/6Open asset ↗Mendeley Data · 10.17632/9zgkwwv9j8.6html-lines:97-124Plant phenotyping relevance match · UnverifiedCrossref · checked 14 Sept 2026
Published24 Jul 2026International Journal of Computer Information Systems and Industrial Management ApplicationsCited by 0 · OpenAlex ↗
In India, to increase the wheat yield production and support sustainable agricultural practices, timely and correct identification of wheat crop diseases such as yellow rust, brown rust, etc., is very much essential. Further, the majority of deep learning algorithms show high efficiency in plant disease detection and recognition, but these studies rely on handcrafted datasets captured under controlled laboratory conditions and accordingly will not perform well in the real world domain. Furthermore, there is a lack of real field wheat crop disease datasets collected in India, particularly from Haryana state, being the largest producer of wheat crops. Therefore, to address the issue of lack of region specific crop diseases dataset, which are region-specific, the wheat crop disease data set is curated, consisting of 2672 images of healthy and diseased leaves of wheat crops collected from the real field of CCS Haryana Agricultural University, Hisar. The dataset includes typically three classes of leaves of wheat crop, i.e., Yellow Rust (910), Brown Rust (922) and Healthy leaves (840) collected using both a DSLR camera and different smartphone cameras under natural lighting and field conditions. All images were validated and labeled by taking the expertise of wheat pathologists to ensure reliability on the dataset. The study also provides a comprehensive, systematic workflow for transforming raw data into a high-quality benchmark dataset for training using image preprocessing and augmentation techniques. Besides this, a comparative benchmarking analysis is performed under identical experimental conditions using three widely adopted deep learning architectures, which includes ResNet50, MobileNetV2 and EfficientNet-B0. The experimental results show that ResNet50 and EfficientNet-B0 achieve similar performance i.e. approximately 91% classification accuracy on real-field data. However, MobileNetV2 offers a lightweight alternative suitable for mobile and edge deployment. Furthermore, Grad-CAM based explainability analysis was performed to validate model predictions and highlight disease specific regions in wheat leaves. Therefore, this study contributes a practical region specific WheatDisease-HRY dataset and baseline benchmarking framework for developing robust AI based wheat disease diagnosis tools for real world agricultural applications in India.
Why it matches plant phenotyping methodsコムギ葉の病徴を画像から判定するデータセットを構築し、前処理・拡張、深層学習ベンチマーク、説明可能性解析までを中心的に扱うため、植物病害状態の画像ベース表現型手法として採用。
abstractThe study also provides a comprehensive, systematic workflow for transforming raw data into a high-quality benchmark dataset for training using image preprocessing and augmentation techniques.
The intelligent identification of tea diseases is crucial for ensuring tea quality and reducing economic losses in the tea industry. However, the deployment of deep learning models on edge devices remains challenging due to the conflict between detection accuracy and computational overhead. To address this, we propose CA-YOLOv8n, a lightweight object detection model tailored for tea disease diagnosis. Specifically, we introduce a Path-Decoupling strategy to streamline the network structure and integrate the Coordinate Attention (CA) mechanism to enhance the model's spatial awareness of subtle pathological features. Experimental results demonstrate that the proposed model achieves a mean Average Precision (mAP@50) of 98.89% while reducing the parameter count by 32.6% and FLOPs by 24.1% compared to the baseline YOLOv8n. The model was integrated into a diagnostic platform with an automated reporting interface, demonstrating that real-time tea disease identification is feasible on commodity CPU hardware in resource-constrained agricultural environments.
Why it matches plant phenotyping methods茶葉の病害を画像から検出する軽量深層学習モデルを開発・評価し、植物の病害状態を直接推定する方法が研究の中心である。
titleSpatial-aware lightweight network for real-time tea disease detection: A coordinate attention-enhanced YOLOv8n approach with path-decoupling strategy.
Reproduction assets foundThe paper's tea-leaf disease image dataset (9,591 images, YOLO format) is publicly deposited on figshare under CC BY 4.0, as stated in the Data Availability statement and dataset description. No author analysis code or trained model checkpoints are explicitly deposited.Dataset · publicAll data underlying the findings of this study are publicly available on figshare at https://doi.org/10.6084/m9.figshare.32253357 (CC BY 4.0).Open asset ↗figshare · 10.6084/m9.figshare.32253357lines:1-122Code / dataset availability confirmedEurope PMC · checked 5 Sept 2026
Field / plotLeafClassificationDisease symptoms / severity
Early and reliable diagnosis of hibiscus leaf diseases is critical to protect horticultural yield. Yet, it remains challenging under real-time field conditions where uncontrolled lighting, clutter, and the non-contiguous nature of pathological symptoms blur diagnostic cues. To address these challenges, we introduce CNN-FusionViT-GNN. This explainable hybrid multi-branch framework synergizes the fine-grained texture extraction of a DenseNet201 backbone, the global contextual modeling of a Vision Transformer (ViT), and the relational reasoning of a Graph Neural Network (GNN). The model is trained and validated on 'Hibiscus,' a curated field dataset of 1165 images from Bangladesh, which is strategically augmented to 8000 samples for robust training following a strict train-validation-test split. The proposed framework achieves a state-of-the-art accuracy of 98.33% with a macro F1-score of 0.98. The framework's generalization is confirmed through high performance on external datasets: 98.78% accuracy on the 52-class Plant City dataset and 83.88% on the 10-class Tomato Leaf Disease dataset, while maintaining a rapid inference time of 10-45 ms. Furthermore, a multi-faceted Explainable AI (XAI) audit using LIME, Grad-CAM++, ViT Attention Maps, and Occlusion Sensitivity validates that the model's decisions are driven by biologically meaningful symptom patterns rather than background artifacts. This study establishes a computationally efficient, transparent, and robust pathway for automated disease diagnosis in precision agriculture.
Why it matches plant phenotyping methodsハイビスカス葉の病徴を画像から分類するCNN-ViT-GNN手法を開発し、複数データセットで性能検証しているため、植物病害表現型の取得・推定が中心である。
abstractwe introduce CNN-FusionViT-GNN. This explainable hybrid multi-branch framework synergizes the fine-grained texture extraction of a DenseNet201 backbone, the global contextual modeling of a Vision Transformer (ViT), and the relational reasoning of a Graph Neural Network (GNN).
Reproduction assets foundThe paper's primary Hibiscus leaf disease image dataset is publicly deposited on Mendeley Data, and the external Tomato Leaf Disease dataset used for validation is also publicly available on Mendeley Data. No author analysis code or trained model checkpoints are reported.Dataset · publicThe primary dataset generated and analyzed during the current study,“Hibiscus Leaf Diseases Classification Dataset,”is publicly available in Mendeley Data 7 .Open asset ↗Mendeley Datalines:307-347Plant phenotyping relevance match · UnverifiedEurope PMC · checked 5 Sept 2026
Abstract Uneven occurrence of potato leaf diseases necessitates site-specific treatment rather than conventional uniform spraying. This study presents a vision-guided autonomous variable-rate spraying system integrating real-time deep learning-based disease detection, temporal disease severity estimation, and PWM-controlled precision spray actuation for targeted crop protection. A composite dataset comprising 1,561 field images containing 14,166 annotated leaf instances was developed under dense canopy conditions. Comparative evaluation of object detection architectures showed that YOLOv26 achieved the highest detection performance with a peak mAP@0.5 of 0.961, outperforming YOLOv8 (0.924) by 3.7% and YOLOv12 (0.938) by 2.3%. The lightweight YOLOv26n variant was selected for embedded deployment. When deployed on a Raspberry Pi 5, the optimized ONNX model achieved an inference speed of approximately 10 FPS, corresponding to a spatial sampling interval of 0.018 m at an operating speed of 0.18 m/s. A 2 s temporal sliding window generated a stable canopy-level disease severity index, which was mapped to PWM duty cycles for variable-rate pesticide application. Field experiments involving 598 spatial spray decision instances validated the proposed perception-driven spray control framework. Compared with conventional constant-rate spraying, the system reduced agrochemical consumption by 32.75% (from 458 to 308 L/ha). These results demonstrate the feasibility of integrating embedded deep learning and adaptive spray control into a field-deployable autonomous spraying platform for precision potato disease management.
Why it matches plant phenotyping methodsジャガイモ葉の病徴検出とキャノピー病害重症度推定を中核とする視覚センシング・深層学習・噴霧制御プラットフォームの開発および実地検証であり、植物状態の定量的推定方法が中心である。
abstractThis study presents a vision-guided autonomous variable-rate spraying system integrating real-time deep learning-based disease detection, temporal disease severity estimation, and PWM-controlled precision spray actuation for targeted crop protection.
Plant disease phenotyping underpins resistance breeding, epidemiology and crop-loss management, yet it remains a recognised bottleneck. This review asked whether the two metrics that dominate the discipline, the disease severity index (DSI) and the area under the disease progress curve (AUDPC), adequately represent disease as a temporally unfolding process, and what the evidence says about dynamic alternatives. Reporting followed PRISMA 2020 and the Synthesis Without Meta-analysis (SWiM) guideline. Web of Science Core Collection, Scopus, PubMed and a Google Scholar grey-literature sweep were searched for records published between January 2020 and December 2025, retrieving 1,192 records; 874 remained after de-duplication, 128 full texts were assessed and 31 studies met the eligibility criteria. Citation chasing added 24 foundational works, giving 55 included studies. Records were dual-screened (Cohen's kappa = 0.86), appraised with an adapted Mixed Methods Appraisal Tool, and synthesised using vote counting by direction of effect, an evidence map and structured cross-study comparison; meta-analysis was inappropriate because outcomes were not commensurable. Thirty studies (54.5%) represented disease at a single assessment and eight (14.5%) collapsed the epidemic into one integrated area, whereas only twelve (21.8%) retained the full trajectory. Across six outcome domains, all 29 study-level comparisons favoured the temporally richer method and none reported a null or negative result, an asymmetry indicating probable reporting bias. Certainty was high for visual-assessment findings, moderate for sensing and dynamic modelling, and low for field-realised genetic gain. The phenotyping bottleneck has migrated from data acquisition to data representation.
Why it matches plant phenotyping methods植物病害フェノタイピング手法の動的評価を中心に、既存指標と代替手法を体系的に比較した方法論レビューである。
titleA Systematic Review of Dynamic Disease Phenotyping in Plant Pathology
Field / plotLeafClassificationStress / disease detectionDisease symptoms / severity
This study aims to develop a classification system for papaya leaf diseases based on digital image processing using the Convolutional Neural Network (CNN) method with the MobileNetV3 architecture. The background of this research is the manual process of identifying papaya leaf diseases by farmers, which is often inefficient and prone to misdiagnosis. The research method adopts a software engineering approach using the Agile development model, allowing iterative and flexible system development. The dataset consists of papaya leaf images categorized into three classes: curl, ringspot, and healthy, obtained from field observations and secondary datasets. The data were processed through preprocessing stages before being used to train the CNN model. The results indicate that the best model was achieved using a learning rate of 0.001 and 30 epochs, with a validation accuracy of 95.56% and a testing accuracy of 88.89%. The model demonstrates high confidence in classifying images, particularly for the curl and healthy classes. However, the confusion matrix reveals that the model's performance on the ringspot class remains relatively low due to a high misclassification rate. Overall, the developed system is capable of automatically identifying papaya leaf diseases and has strong potential for implementation as an Android-based application to support early detection and decision-making in plant care.
Why it matches plant phenotyping methodsパパイヤ葉の画像から病害状態を推定するCNN分類手法の開発・評価が研究の中心であり、植物表現型計測に該当する。
abstractThis study aims to develop a classification system for papaya leaf diseases based on digital image processing using the Convolutional Neural Network (CNN) method with the MobileNetV3 architecture.
Potato leaf disease is one of the main problems in potato cultivation because it can reduce plant quality, decrease crop yield, and cause economic losses for farmers. Manual disease detection still has limitations because it depends on farmers’ experience and is prone to errors, especially when disease symptoms have similar visual characteristics. This study aims to apply the Convolutional Neural Network (CNN) algorithm to predict potato leaf diseases based on digital images. The dataset used in this study was obtained from Kaggle and consisted of 1,500 potato leaf images divided into three classes: healthy leaves, early blight, and late blight. The research stages included dataset collection, data splitting into training, testing, and validation data, CNN modeling using Jupyter Notebook, model training with 50 epochs, model evaluation using a Confusion Matrix, and model implementation into a web-based system using Flask. The test results show that the CNN model was able to classify potato leaf diseases with an accuracy of 97%. These results indicate that CNN is effective in recognizing visual patterns in potato leaf images, such as color changes, spots, and leaf damage. This study is expected to serve as a basis for developing an early detection system for potato leaf diseases that is faster, more accurate, and easier for farmers to use.
Why it matches plant phenotyping methodsジャガイモ葉の画像から病害状態を推定するCNN手法が研究の中心であり、モデル評価と実装も行っているため、植物フェノタイピング手法として含める。
abstractThis study aims to apply the Convolutional Neural Network (CNN) algorithm to predict potato leaf diseases based on digital images.
The early and effective diagnosis of tomato leaf diseases is very important to enhance crop yield and reduce economic loss in precision agriculture. The conventional image-based methods are typically based on single architecture model, which cannot capture fine-grained lesion details and global contextual patterns simultaneously in the real-field. To this end, we introduce a deep hybrid Convolutional Neural Network (CNN) –Transformer architecture by combining ConvNeXt Large (ConvNeXt-L) (as local feature extractor) and Swin Transformer (as global context encoder). The concatenated features vector is then fed to a shallow classifier to predict the disease. The model was tested on two datasets, namely a field dataset in agriculture areas from Madhya Pradesh (India) and a benchmark tomato leaf dataset. Experimental results revealed that the proposed scheme achieved accuracy of 92.83% on a primary dataset, and performance was significantly high with an accuracy of up to 95.65% in terms of generalization rate for computing technique models from various environmental conditions.
Why it matches plant phenotyping methodsトマト葉の病害状態を画像から推定するCNN–Transformer手法を提案し、複数データセットで性能検証しており、植物フェノタイピング手法が中心である。
abstractwe introduce a deep hybrid Convolutional Neural Network (CNN) –Transformer architecture by combining ConvNeXt Large (ConvNeXt-L) (as local feature extractor) and Swin Transformer (as global context encoder).
Reproduction assets foundThe paper uses a public Tomato Leaves Dataset from GTS AI as its secondary/external validation dataset for tomato leaf disease classification. The primary field dataset from Madhya Pradesh is not stated as publicly available, and no author analysis code or trained model is reported as deposited.Dataset · publicSecondary Dataset: The Secondary dataset was extracted from the public Tomato Leaves Dataset
available at GTS AI platform. It involves various disease classes, such as bacterial spot, early blight,
late blight, leaf mold, powdery mildew, septoria leaf spot and spider mites (Figure 1) target spots are
present in tomato mosaic virus leaves yellow curl virus of tomato. This data set was employed as an
external validation to evaluate the generalization of proposed model in different conditions and
diseases types.
Source : https://gts.ai/dataset-download/tomato-leaves-dataset/Open asset ↗GTS AIpdf-page:20 lines:1-23Code / dataset availability confirmedCrossref · checked 14 Sept 2026
Published23 Jul 2026Journal of Intelligent Decision Making and Information ScienceCited by 0 · OpenAlex ↗
- Enhancing agricultural productivity and attaining sustainable crop management depend on the early and precise identification of leaf disease. Using state-of-the-art technologies in precision agriculture like machine learning (ML) and image processing greatly increases the effectiveness of disease detection and facilitates well-informed decision-making. But conventional manual inspection techniques are still tedious, unpredictable, and prone to errors. In order to overcome these constraints, this research offers YOLOv12-CropNet, an innovative deep learning-based system for multi-crop leaf disease diagnosis in real time. The proposed YOLOv12-CropNet approach makes use of the Convolutional Block Attention Module (CBAM) for adaptive attention, the Content-Aware Reassembly of Features (CARAFE) up-sampling module to preserve fine-grained disease characteristics, the YOLOv12 architecture improved with Ghost Convolution for effective feature extraction, and Involution layers to capture spatially specific patterns. Inspection techniques are still laborious, arbitrary, and prone to mistakes. A substantial set of data of 38 classes of both healthy and sick leaves from a variety of crops, including tomato, potato, apple, grape, corn, mango and sugarcane, was put together for training and evaluation. Experimental results show that YOLOv12-CropNet finds a suitable balance between computational speed and accurate detection. Accuracy, F1-score, recall, and precision are important performance metrics that verify the model's resilience in challenging environmental and visual circumstances. The suggested technique provides a scalable and field-deployable way to assist effective identification of diseases and precision agricultural decision-making. The proposed YOLOv12-CropNet model exhibits better performance than the other evaluated models, attaining a 98.45% peak accuracy, 98.10% precision ,98.20 % sensitivity and a 98.18% F1 score, thereby highlighting its efficacy in multi-crop leaf disease detection.
Why it matches plant phenotyping methods複数作物の葉の病徴を画像から検出・分類する深層学習手法を開発し、データセットと性能評価を伴うため、植物病害状態のフェノタイピング手法が中心である。
abstractthis research offers YOLOv12-CropNet, an innovative deep learning-based system for multi-crop leaf disease diagnosis in real time.
Reproduction assets foundThe paper uses public Kaggle datasets as its phenotyping image inputs: the PlantVillage dataset (38 crop-disease classes) and the Sugarcane Leaf Disease dataset, both cited with explicit public URLs. No author code, models, or checkpoints are reported as publicly available.Dataset · public[37] PlantVillage Dataset. Available online: https://www.kaggle.com/datasets/abdallahalidev/plantvillage-datasetOpen asset ↗pdf-page:22 lines:1-61Dataset · public[39] Sugarcane leaf Disease Dataset available online: https://www.kaggle.com/datasets/nirmalsankalana/sugarcane-Open asset ↗pdf-page:22 lines:1-61Plant phenotyping relevance match · UnverifiedEurope PMC · Crossref · checked 5 Sept 2026
Abstract The diseases on sesame leaves have a huge implication on the production and earnings of farmers particularly in the developing areas. It is important to ensure that the disease is properly managed by identifying it early and correctly. The purpose of this study is to create a deep learning-based framework that could be used to categorize four of the most common scenarios involving sesame leaves, i.e. Healthy Leaf, Leaf Spot Disease, Yellowing Leaf Syndrome, and Leaf Damage by Insects using high-resolution images acquired in Pabna, Bangladesh. The preprocessing, augmentation and split of a set of 3,540 images were performed into training and validation sets. The pre-trained convolutional neural networks models were trained and tested on five models inceptionV3, EfficientNetB3, ResNet50, MobileNet, and DenseNet121 by measuring the metrics such as accuracy, precision, recall, and F1-score. MobileNet achieved the highest accuracy of 96.33%, precision of 96%, recall of 96%, and the F1-score of 96%, which is the best amongst them. The findings indicate that deep learning architectures are capable of classifying the sesame leaf diseases in a reliable and precision-oriented way that is not affected by different environmental circumstances. The study facilitates the creation of the automated, efficient methods of detecting the disease at an early stage, cutting down the number of pesticides used and enhancing crop control. Future direction will be to enlarge the dataset, add temporal data and to implement lightweight models so that it can be deployed to real-time field projects
Why it matches plant phenotyping methodsセサマ葉画像から病害状態をCNNで分類する手法の開発・比較評価が研究の中心であり、植物の病害表現型を直接推定している。
abstractThe purpose of this study is to create a deep learning-based framework that could be used to categorize four of the most common scenarios involving sesame leaves
Introduction Safeguarding the yield and quality of field crops against abiotic stresses is critical for large-scale agricultural production and precision agronomy. This study addresses the challenges of detecting concealed fruit stress and overcoming label scarcity in unmanned aerial vehicle (UAV) multispectral monitoring, using blossom-end rot (BER) in processing tomatoes as a case study. Methods We developed a leaf-fruit synergistic Roll and Color Disease Index (RCDI), integrating fruit incidence with visible canopy phenotypic features to characterize the combined canopy-fruit stress status associated with BER. A three-level screening strategy was used to identify the optimal spectral feature set. A Multi-model Collaborative Cyclic Self-Training (MCC-ST) framework was subsequently developed to address the limited availability of severity-labeled samples. Results The combination of GRVI, NDVI, and SAVI was identified as the optimal spectral feature set, achieving stable within-dataset binary classification performance of approximately 97% in repeated cross-validation. Under 30 random-seed repeated stratified three-fold cross-validations, MCC-ST + DT and MCC-ST + RF achieved RCDI-based BER severity-grading accuracies of 85.00% ± 0.31% and 85.07% ± 0.42%, respectively. Compared with the corresponding original DT and RF models, MCC-ST improved repeated-validation accuracy by 16.19-4.09 percentage points. Discussion The RCDI helps bridge the observational gap between canopy signals and concealed fruit stress, while MCC-ST alleviates the bottleneck associated with label scarcity. The proposed approach provides a promising framework for crop abiotic-stress monitoring under limited-label conditions.
Why it matches plant phenotyping methodsUAVマルチスペクトル画像からトマトの果実ストレス状態・BER重症度を推定する指標と、ラベル不足に対応する機械学習フレームワークを開発・検証しており、植物表現型取得・推定手法が研究の中心である。
abstractThis study addresses the challenges of detecting concealed fruit stress and overcoming label scarcity in unmanned aerial vehicle (UAV) multispectral monitoring, using blossom-end rot (BER) in processing tomatoes as a case study.
Abstract Sclerotinia minor (causing Sclerotinia blight) is a devastating pathogen in peanut production, with severe outbreaks causing up to 50% yield loss due to rapid oxalic acid (OA) accumulation. Early diagnosis is challenging because canopy-level symptoms typically emerge only after infection is well established, while early cues are subtle, stem-localized, and nonspecific; in contrast, molecular assays are time- and resource-intensive. Despite established mechanistic links between oxalate accumulation and disease progression, so far, there are no sensors developed or tested for detecting Sclerotinia blight in peanut plants. This paper reports a low-cost, lithography-free, and label-free electrochemical sensor for metabolite-targeted, presymptomatic monitoring of S. minor in peanut plants based on clear mechanistic links between oxalate accumulation and disease progression. The sensor platform comprises 3D-printed resin substrates with platinum (Pt) electrodes and a nanostructured reduced graphene oxide (rGO)−chitosan interface functionalized with an oxaloacetic acid (OAA) interfacial layer. Using ferri/ferrocyanide as a redox probe, the sensor exhibited a linear calibration to oxalate (prepared from OA) from 0.05 µM to 1 mM (R2 = 0.99), with a sensitivity of 6.37 µA/decade, limit of detection of 17.6 nM, and excellent coefficient of variation of 0.93−3.32% across standards (n = 4). In real plant trials, stem sap from S. minor-inoculated peanut plants produced significantly elevated voltammetric responses relative to healthy and Nothopassalora personata controls as early as five days post-inoculation (dpi), enabling longitudinal monitoring through 20 dpi (p
Why it matches plant phenotyping methods植物体内のシュウ酸を指標に、ピーナッツの病害を早期・無症状段階で検出する電気化学センサーを開発し、校正性能と実植物での識別・経時モニタリングを検証している。病害状態の取得法が研究の中心である。
abstractThis paper reports a low-cost, lithography-free, and label-free electrochemical sensor for metabolite-targeted, presymptomatic monitoring of S. minor in peanut plants
Chili plants (Capsicum sp.) are one of the important horticultural commodities in Indonesia with high economic value. However, chili productivity is often reduced due to leaf diseases such as leaf curl, yellow leaf virus, and leaf spot disease. Manual disease identification conducted by farmers still has several limitations because it requires considerable time, experience, and is prone to observation errors. Therefore, an automatic system is needed to support early detection of chili leaf diseases quickly and accurately. This study aims to develop a chili leaf disease classification system using a Convolutional Neural Network (CNN) based on leaf images. The dataset used in this study consists of chili leaf images categorized into four classes, namely healthy leaves, leaf curl, yellow leaf, and leaf spot. The research stages include dataset collection, image preprocessing, data augmentation, CNN model training, and model evaluation using a confusion matrix with performance metrics including accuracy, precision, recall, and F1-score. The results show that the CNN model is capable of classifying chili leaf diseases with satisfactory performance. Based on the evaluation results, the model achieved a precision value of 0.75, a recall value of 0.53, and a mean Average Precision (mAP@0.5) value of 0.60. The developed system is also able to display classification results along with the confidence score of the prediction. Therefore, the CNN method has strong potential to be implemented as an image-based early detection system for chili leaf diseases to assist farmers in monitoring plant conditions more effectively.
Why it matches plant phenotyping methods葉画像から健全・各種病徴を分類するCNNシステムの開発と性能評価が研究の中心であり、植物の病害状態を直接推定する画像ベース表現型計測に該当する。
abstractThis study aims to develop a chili leaf disease classification system using a Convolutional Neural Network (CNN) based on leaf images.
Abstract Outbreaks of plant diseases are major threats to world food security particularly in areas where real-time monitoring and quick decision support are constrained by low-power edge gadgets and untrustworthy connectivity. In order to overcome these issues, this paper presents a FPGA-Accelerated IoT implementation of a Causal-Attention Multi-Modal Deep Learning Network, named EpiFusionNet-Edge, that can be applied to monitor crop diseases with real-world farming scenarios with high precision and scalability. The framework incorporates five data modalities that are complementary in nature and they include RGB leaf pictures, microscopic foldscope images, UAV hyperspectral signatures, microclimate IoT sensor measurements and region-specific pathogen/pest pressure indexes giving a complete picture of the health of the plant. Dual causal-attention mechanism is proposed to simulate both spatial and temporal environmental factor activation, which helps to detect and make predictions at the early stage and provides an explanatory logic behind the decisions. Multi-task learning enables classification of diseases, quantification of their intensity at the level of a micro-prediction and prediction of outbreaks in the short term (1–30 days). In order to achieve deployability in resource-constrained settings, the proposed deep learning architecture is ensemble-distilled, structurally pruned, and INT8-quantized, and hardened on a Xilinx Zynq-7000 FPGA platform. The FPGA accelerator is 43.2x faster inference, 88 percent less power usage, and less than 10 ms latency, which allows real-time execution of continuous field monitoring with IoT sensors. Cross-condition assessment on multi-domain datasets shows that there are great improvements on cross-environment generalization rates with 98.6% classification accuracy, 92.7% severity estimation accuracy and less than 3.5% degradation with domain shift. Grad-CAM + + and causal feature traceability further add interpretability with the focus of the model and the pathological indicators proven by experts. The findings show the promise of using a combination of IoT sensing, multi-modal AI fusion, and FPGA hardware acceleration to develop a deployable and scalable and transparent system with regard to precision agriculture. This paper creates a roadmap to a new generation of smart farming systems that are able to conduct disease surveillance and actively protect crops at the periphery in an autonomous manner.
Why it matches plant phenotyping methods植物病害の画像・センサー観測から病害強度を定量化するマルチモーダル・エッジ推論基盤を開発し、精度・速度・消費電力・ドメインシフトを評価しているため、植物フェノタイピング手法が中心である。
abstractthis paper presents a FPGA-Accelerated IoT implementation of a Causal-Attention Multi-Modal Deep Learning Network, named EpiFusionNet-Edge
ABSTRACT Banana diseases impose severe production losses in tropical smallholder farming systems, yet accurate in-field visual diagnosis remains difficult: symptom expression varies across cultivars and growth stages, and several diseases produce morphologically overlapping foliar signs. We developed a probabilistic image-recognition framework for detecting five economically important banana diseases — Xanthomonas Wilt, Banana Bunchy Top Disease, Fusarium Wilt (Panama disease), Yellow Sigatoka, and Black Sigatoka — from in-field photographs, without any disease-specific fine-tuning of the vision backbone. The approach extracts frozen 1,152-dimensional embeddings from the DINOv3 vision foundation model and couples them with a conditional normalizing flow, trained on four publicly available datasets spanning diseased banana plants, healthy tissue, non-banana vegetation, and general natural imagery. On an independent test set the model achieved F1 scores exceeding 0.98, average precision values of 0.968–0.999, and AUROC values of 0.997–1.000 across all five diseases evaluated as binary detection problems. Multi-class accuracy was near-perfect, with limited confusion between Yellow Sigatoka and Black Sigatoka — a biologically plausible ambiguity attributable to overlapping early-infection foliar symptoms. Because the normalizing flow estimates explicit conditional probability densities rather than decision boundaries, two complementary log-likelihood ratios can be derived: a disease ratio comparing each disease class against healthy banana, and a plant ratio comparing banana against non-banana imagery. Together these define an interpretable two-dimensional diagnostic space that simultaneously quantifies evidence for disease presence and image relevance, cleanly separating diseased plants, healthy plants, and out-of-distribution images while flagging uncertain predictions for confirmatory testing. Inference on frozen embeddings is lightweight and compatible with smartphone deployment, providing a scalable, uncertainty-aware diagnostic tool for smallholder farming systems and disease surveillance programmes.
Why it matches plant phenotyping methodsバナナ葉の病徴を圃場画像から直接推定する確率的画像認識手法を開発し、独立テストセットで性能検証しているため、植物病害状態のフェノタイピング手法が中心である。
abstractWe developed a probabilistic image-recognition framework for detecting five economically important banana diseases
Abstract Blanket-rate agrochemical scheduling — a practice wherein the same quantity of fertilizer or pesticide is spread uniformly across an entire field irrespective of spatial or temporal crop need — persists as the dominant farm management paradigm across rural India and large parts of South Asia. This approach generates cascading inefficiencies: excess nitrogen drains into waterways, off-target pesticide deposits devastate pollinators, input costs erode thin profit margins, and wide-scale greenhouse gas release from soil microbial activity accelerates climate change. The study documented here addresses this challenge through a purpose-built, four-layer intelligent field management platform. The platform ingests continuous data from drone-mounted multispectral cameras, in-field IoT soil probes, a wireless weather station, and cloud-sourced Sentinel-2 satellite imagery, then passes these inputs through a cascaded AI inference stack. A fine-tuned YOLOv8-L network performs real-time pest and foliar disease localisation; a ResNet-50 backbone quantifies canopy health across five stress gradients; a two-layer stacked LSTM projects short-horizon yield trajectories; and a Deep Q-Network autonomously plans drone spray routes weighted by field-specific prescription maps. Field validation spanned two consecutive growing seasons (Rabi 2022–23 and Kharif 2023–24) across six georeferenced plots covering 4.8 ha at Baramati, Maharashtra. Outcome metrics recorded during head-to-head comparison with conventional practice included a disease detection score of 95.6% mAP, a 47.3% reduction in total nitrogen applied, a 38.1% decrease in pesticide volume, and a 22.4% uplift in harvested grain weight. Together, these field-verified numbers substantiate the operational readiness of integrated AI precision agriculture for smallholder deployment.
Why it matches plant phenotyping methodsマルチスペクトル画像・深層学習による病害局在化とキャノピー健康状態の定量化を中核機能とする統合プラットフォームであり、植物の病害状態・生育状態を直接推定して現地検証している。
abstractThe platform ingests continuous data from drone-mounted multispectral cameras, in-field IoT soil probes, a wireless weather station, and cloud-sourced Sentinel-2 satellite imagery, then passes these inputs through a cascaded AI inference stack.
Reproduction assets found保存済みの本文根拠を更新済みルールで再検証し、公開資産1件を確認しました。Code · publicData Availability The annotated image dataset (14,300 images, 23 classes), trained YOLOv8-L and ResNet-50 weights, LSTM model files, DQN policy checkpoint, and all analysis scripts are archived at https://github.com/precision-agri-ai (Zenodo DOI: 10.5281/zenodo.XXXXXXX).Open asset ↗precision-agri-ailines:161-182Plant phenotyping relevance match · UnverifiedCrossref · checked 5 Sept 2026
Remote sensing has become an important tool for crop monitoring and precision agriculture, yet its applications in sugar beet production remain fragmented across sensing platforms, target traits and modelling strategies. This review synthesises the development, current applications and future directions of remote sensing in sugar beet production, with particular attention to the transition from crop monitoring to precision management. A structured search was conducted in Scopus and the Web of Science Core Collection for publications from 2003 to 2025, and 181 relevant peer-reviewed articles were retained for thematic analysis. The literature shows a clear increase in sugar beet remote sensing studies, particularly after 2015, coinciding with the availability of Sentinel-2 imagery and, from 2016 onwards, the growing use of unmanned aerial vehicle-based sensing. It also indicates a gradual shift from crop mapping and canopy monitoring towards disease detection, weed mapping, yield prediction and management-oriented applications. Current studies demonstrate the value of satellite, unmanned aerial vehicle and proximal sensing for retrieving canopy traits, assessing biotic stresses, estimating root yield and supporting field-scale management. However, sugar beet presents specific challenges because its economic value depends not only on canopy development or root biomass, but also on sucrose concentration, recoverable sugar yield, and processing quality. These quality-related traits remain less studied and are difficult to infer directly from canopy observations. Modelling approaches have evolved from vegetation-index-based empirical models towards machine learning, deep learning, multi-temporal analysis, data fusion and crop model assimilation, but issues of model transferability, ground-truth availability and operational decision support remain unresolved. Future research should strengthen multi-source observations, external validation, quality-oriented prediction and decision-support workflows to promote robust, scalable and economically meaningful remote sensing applications in sugar beet production.
Why it matches plant phenotyping methodsサトウダイコンのリモートセンシングによるキャノピー形質、ストレス、根収量などの推定手法を体系的にレビューしており、センシング基盤とモデル化・検証課題が中心的に扱われている。
abstractThis review synthesises the development, current applications and future directions of remote sensing in sugar beet production, with particular attention to the transition from crop monitoring to precision management.
Plant diseases are crucial for improving crop yield and ensuring sustainable agricultural practices, particularly for staple crops such as groundnut and paddy leaf. However, existing methods often suffer from limited feature discrimination, inadequate attention to disease-affected regions, and reduced performance under real-world conditions. To address these limitations, this research introduces a novel deep learning (DL)-based GOPI-NET framework for precise groundnut and paddy leaf disease classification. Initially, the input leaf images are enhanced using Bilateral Filtering (BF) and Contrast Limited Adaptive Histogram Equalization (CLAHE) to reduce noise and improve contrast. Subsequently, HSV color space segmentation is employed to precisely isolate disease-affected regions. The proposed Dual Attention Network (DuAtNet) integrates channel and spatial attention mechanisms within a ConvNeXt backbone to capture discriminative disease-specific features. An efficient Fuzzy Extreme Learning Machine (FELM) classifier is then utilized for final categorization into Healthy, Leaf Spot, Bacterial Wilt, and Leaf Blight classes. The effectiveness of the GOPI-NET is evaluated using precision, recall, specificity, accuracy, and F1-score. The experimental results demonstrate that GOPI-NET achieves an overall accuracy of 98.32%. The GOPI-NET improves classification accuracy by 1.29%, 1.40%, and 2.23% compared to GLDICCNN, DNN-CSA, and LeafNet respectively.
Why it matches plant phenotyping methods植物葉画像から病斑領域を抽出し、病害状態を分類する深層学習手法が研究の中心であり、植物病害表現型の取得・推定に該当する。
abstractthis research introduces a novel deep learning (DL)-based GOPI-NET framework for precise groundnut and paddy leaf disease classification.
TomatoMultimodalLeafClassificationDisease symptoms / severityStress response / tolerancePlant / canopy temperature
Wearable plant sensing systems for simultaneous biochemical and physiological monitoring with real-time multimodal data analysis remain limited. Here, we present FolioClip, a multimodal wearable patch that continuously monitors leaf temperature, humidity, light, CO 2 , and three volatile organic compounds (VOCs) with high selectivity. Its bookmark-inspired design enables secure attachment to plant leaves of diverse morphologies and it integrates a flexible printed circuit board for wireless data transmission. We also develop FolioOmni, an open-source machine learning (ML) framework for sensor importance ranking, multi-stress classification, and early stress detection. The integrated FolioClip–FolioOmni platform detects and classifies nine stresses, including light, water, CO 2 , mechanical cut, P. infestans , and A. alternata , in tomato plants with 92% accuracy. Notably, P. infestans on tomato was detected within 15.5 h post-inoculation, earlier than quantitative polymerase chain reaction (qPCR) (~4 days) and visual phenotyping (~7 days), highlighting the potential of integrating multimodal wearable sensing and online ML for precision agriculture.
Why it matches plant phenotyping methods葉の生理・健康状態とストレスを測定するウェアラブルセンシング装置および機械学習解析基盤を開発し、複数ストレスで性能評価しているため、植物フェノタイピング手法が中心である。
abstractWe also develop FolioOmni, an open-source machine learning (ML) framework for sensor importance ranking, multi-stress classification, and early stress detection.
Accurate identification of rice diseases from field images is critical for crop health monitoring and sustainable agriculture, particularly in low-resource environments. However, most deep learning approaches depend on large-scale labeled datasets and pretrained backbones, limiting their applicability to rare or emerging diseases. In this work, we formulate a domain-specific prototype-based few-shot framework that avoids pretrained visual backbones and treats rice disease recognition as structured matching over a pathogen-aware class graph. The individual components, including wavelet-scattering features, optimal transport, semantic prototype fusion, and transductive refinement, are established techniques; the contribution lies in their coupled use within a disease-taxonomy-guided few-shot matching process. This design combines fixed visual descriptors, root-to-leaf prototype matching, class symptom descriptors, and confidence-gated refinement to support rice disease recognition under limited labeled data. We evaluate the model on two publicly available rice disease datasets-the Philippines Rice Diseases and Roboflow Rice-under 1-shot and 5-shot classification settings. In in-domain experiments, our approach achieves up to 95.8% accuracy and 94.9% macro-F1 on the Philippines dataset, consistently outperforming a diverse set of baselines including CNN-from-scratch, ResNet-18-from-scratch, Matching Networks, MAML, ProtoNet, RelationNet, SimpleShot, FEAT, and a flat optimal-transport variant. In cross-domain evaluation, the model demonstrates strong generalization capability, attaining up to 91.7% accuracy and 90.6% macro-F1 when transferring across datasets. An ablation study further confirms the consistent contribution of hierarchical structure, semantic fusion, and transductive refinement to performance gains. These results demonstrate that the proposed framework delivers highly accurate, robust, and data-efficient disease recognition, making it well-suited for real-world agricultural deployment under limited supervision.
Why it matches plant phenotyping methodsイネの病害を圃場画像から認識する手法を開発・評価しており、植物の病害状態を画像から推定する方法が研究の中心である。
abstractwe formulate a domain-specific prototype-based few-shot framework
Reproduction assets foundThe paper evaluates its few-shot rice disease recognition framework on two publicly available rice disease image datasets, with explicit public URLs in the Data Availability statement and dataset description sections. No author analysis code or trained model checkpoints are disclosed.Dataset · publicThe datasets used in this study are publicly available: Philippines Rice Diseases dataset (https://www.kaggle.com/
datasets/shrupyag001/philippines-rice-diseases)Open asset ↗Kaggle · shrupyag001/philippines-rice-diseasespdf-page:19 lines:1-81Plant phenotyping relevance match · UnverifiedCrossref · Europe PMC · checked 13 Sept 2026
Cassava brown streak disease (CBSD) threatens food security for millions in East Africa, yet its control remains limited by the absence of field-deployable molecular diagnostics. Here, we introduce ELLA (Electrochemical Lateral flow assay with Linked Analytics), a battery-free, smartphone-powered electrochemical lateral flow assay that delivers enzyme-linked immunosorbent assay (ELISA)-grade protein detection directly in the field. ELLA integrates near-field communication, a single-chip potentiostat, metal-pin electrodes, and ferrocene-labeled nanoparticles into a fully disposable cassette, enabling quantitative immunoassays without optical instrumentation or centralized laboratory infrastructure. Validated across laboratory studies and extensive field trials in Tanzania, ELLA achieved 95% agreement with ELISA and 89% agreement with RT-qPCR, outperforming ELISA’s limit of detection while maintaining a material cost below US$1. By coupling molecular test results with cloud-linked analytics, we further trained DeepELLA, a smartphone-based image classification model that enables scalable surveillance from field-acquired leaf images. Together, these advances unify electrochemical sensing, digital connectivity, and AI-assisted interpretation, enabling portable, ELISA-level diagnostics for plant, environmental, and health monitoring in resource-limited regions.
Why it matches plant phenotyping methods主軸は分子診断ですが、植物葉画像から病害状態を分類するDeepELLAも開発され、植物病害表現型の直接推定を含むため対象に含める。
abstractwe further trained DeepELLA, a smartphone-based image classification model that enables scalable surveillance from field-acquired leaf images
Plant diseases significantly affect agricultural productivity and global food security, while accurate disease identification remains challenging because of uncertain and overlapping visual symptoms in leaf images. Existing deep learning approaches often require large annotated datasets and suffer from limited interpretability in practical agricultural environments. This study presents a multi-parameter improved fuzzy soft set-based framework for plant disease classification using tomato leaf images from the PlantVillage dataset. The objective is to develop an interpretable and reliable classification model capable of handling uncertainty in plant disease patterns through feature-driven fuzzy similarity analysis. The methodology integrates image preprocessing, color and texture feature extraction, variance-based feature weighting, prototype generation using K-means clustering, and fuzzy similarity computation using Mahalanobis distance and Gaussian membership functions. RGB, HSV, and Gray-Level Co-occurrence Matrix (GLCM) features are extracted from standardized leaf images and evaluated within an improved fuzzy soft classification framework. Performance comparison is carried out using machine learning models including Support Vector Machine (SVM), Random Forest (RF), Linear Discriminant Analysis (LDA), and Naive Bayes (NB) implemented in Python using Scikit-learn libraries. Experimental simulation results demonstrate that the proposed framework achieves competitive classification performance while preserving interpretability and robustness under uncertain feature distributions. Performance evaluation is conducted through accuracy analysis, ROC-AUC curves, confusion matrices, ablation studies, and Wilcoxon Signed-Rank statistical testing. The proposed Improved Fuzzy Soft model achieved an accuracy of 88.57% which is less than LDA (94.92%), Random Forest (97.78%) and SVM (97.94%) classifiers. However, in the cross data set validation, the proposed Improved Fuzzy Soft model achieved an accuracy of 67.35% which is greater than LDA (51.02%), Random Forest (51.02%) and SVM (55.10%) classifiers. Statistical validation using the Wilcoxon Signed-Rank Test produced a p-value of [Formula: see text], confirming that the performance difference between the Improved Fuzzy Soft framework and the Random Forest classifier is statistically significant under the current experimental setting.
Why it matches plant phenotyping methodsトマト葉画像から植物病害状態を推定する解釈可能な画像解析・分類フレームワークを開発し、複数モデル、交差データセット検証、アブレーション、統計検定で評価しており、病害表現型の取得・抽出手法が中心である。
abstractThis study presents a multi-parameter improved fuzzy soft set-based framework for plant disease classification using tomato leaf images from the PlantVillage dataset.
Reproduction assets foundThe paper uses public tomato leaf image datasets (PlantVillage and PlantDoc from Kaggle) as phenotyping inputs and states the authors' Improved Fuzzy Soft Framework implementation is publicly available on Zenodo with source code and reproduction instructions.Dataset · publicThe dataset analyzed during the current study are available in the repository:
https://www.kaggle.com/datasets/abdallahalidev/plantvillage-datasetOpen asset ↗kaggle.com/datasets/abdallahalidev/plantvillage-datasetpdf-page:24 lines:1-75Code · publicThe implementation of the proposed Improved Fuzzy Soft Framework is publicly available through the Zenodo repository:
https://doi.org/10.5281/zenodo.20570546
The repository contains the source code, documentation, and instructions required to reproduce the experiments reported in
this study.Open asset ↗zenodo · 10.5281/zenodo.20570546pdf-page:25 lines:1-74Plant phenotyping relevance match · UnverifiedCrossref · Europe PMC · checked 15 Sept 2026
Abstract Detecting plant leaf diseases at an early stage is one of the most important requirements for sustainable agriculture, increasing crop productivity, and achieving the global Sustainable Development Goals (SDGs). However, accurately recognizing them in real-world farm fields can still be difficult due to factors such as background complexity, changes in light conditions, and very similar looking classes from a visual standpoint. In order to solve these problems, the authors here present a new Multi-Scale Feature Fusion (MSFF) model that can offer robust and highly accurate performance in identifying plant leaf diseases. Firstly, the brand new hybrid method starts with a U-Net segmentation designed exclusively to separate the diseased parts and thus allow the classification to be more robust. Next, Rank Order Fuzzy (ROF) is implemented to get rid of the background while still maintaining the edges, and the additional data is used for the network to generalize better. The color distribution is then analyzed to determine the variations in color brought about by the infection. In terms of features, EfficientNet is paired with an Attention-based Autoencoder to produce both spatially detailed global features and compact latent representations. The two sets of features are then combined through Canonical Correlation Analysis (CCA) which not only identifies the dependencies between the features but also enhances the discriminative strength. The final fused feature set is fed to module based on YOLO for detection and classification in order to obtain the final result of the plant disease identification system which is both accurate and fast. Among other datasets, the model has been tested on different apple leaf datasets such as FGVC7, AppleLeafSet, PlantVillage Apple, Kaggle Apple Leaves, and ATLDSD, which contain five disease classes. The results of the experiments indicate a classification accuracy of 99.95%, thus the model is superior to several state-of-the-art deep learning and classical machine learning methods. Statistical methods like five-fold cross-validation, paired t-tests ( p
Why it matches plant phenotyping methods植物葉の病変部位を画像から自動抽出し、病害の識別・分類を行う画像ベースのフェノタイピング手法を開発・評価しており、手法が研究の中心である。
abstractthe authors here present a new Multi-Scale Feature Fusion (MSFF) model that can offer robust and highly accurate performance in identifying plant leaf diseases
Plant leaf diseases cause severe losses in crop yields and qualities, and account for considerable volume of losses to the agricultural output globally. Recognition of plant disease early and rightly is crucial to disease treatment and to reduce loss to the crop and to maintain agricultural sustainability. Plant disease that occurs on the leaves has been traditionally detected by farmers and experts with naked eyes by checking its symptoms like discoloration, spots and lesions. However, the process requires time, labour, expertise and is subjective, which renders it unusable for large-scale implemented agriculture. Recent years have seen the promising use of Artificial Intelligence (AI) as a tool for automated plant disease identification. The extraction of manually-crafted features from photographs of plant leaves, such as colour, texture, and form, is at the heart of many Machine Learning (ML) approaches used for disease classification. While these ML models have shown acceptable performance, they require significant manual feature engineering and can be poor at operating in real-world settings and with voluminous data. To address these issues, Deep Learning (DL) algorithms have found extensive usage in the identification and categorisation of plant leaf diseases. The You Only Look Once (YOLO) family of detection of objects models is making waves in the DL object detection space thanks to its impressive dual-tasking capabilities: object identification and multiple illness categorisation in a single pass, all at lightning speed and with pinpoint accuracy. For real-time disease identification in precision agriculture, YOLO stands out as an end-to-end feature learning and object recognition method, set apart from typical ML approaches. Understanding the DL models suggested for plant leaf disease detection and classification using the YOLO principle is the primary goal of this survey. It also provides a comparative and performance analysis of these models by examining their techniques, merits, demerits, datasets used, and evaluation metrics.
Why it matches plant phenotyping methods植物葉の病徴を画像から認識・分類するYOLO系手法を主題とした比較・性能分析レビューであり、植物の病害状態を抽出するフェノタイピング手法が中心です。
abstractUnderstanding the DL models suggested for plant leaf disease detection and classification using the YOLO principle is the primary goal of this survey.
Grapevine yellows diseases, including Flavescence Dorée (FD) and Bois Noir (BN), severely affect vineyards, making reliable detection methods essential. Detecting symptoms, particularly in Chardonnay variety, remains challenging due to year-to-year vine variability and the presence of symptoms that can be misleading. We present a dataset of multispectral images of grapevine leaves collected over four years (2021–2024). The dataset includes healthy leaves, grapevine yellows - overwhelmingly BN, and three other diseases (Esca, Discoloration, and Leafroll) with visually similar symptoms particularly for Leafroll, providing a diverse benchmark for disease recognition. Ground-truth labels were assigned based on field inspections conducted by Comité Champagne expert viticulturists who selected the vines before acquisitions and analyzed the images after acquisition. Images were acquired under laboratory conditions using a DJI Phantom 4 Multispectral camera from leaves collected in the Plumecoq Comité Champagne experimental vineyards. Leaves were collected on designated vines and placed on polystyrene boards on a 2x2 grid. One RGB image and five multispectral images corresponding to the Blue (B - 450 nm ± 16 nm), Green (G - 560 nm ± 16 nm), Red (R - 650 nm ± 16 nm), Red-Edge (RE - 730 nm ± 16 nm), and Near-Infrared (NIR - 840 nm ± 26 nm) bands were captured using the same acquisition system (camera-to-board distance of approximately 90 cm) over the four years.. For the vast majority, ambient light was used; for some acquisitions, indirect halogen spotlights were used. The 512x512 leaf images were manually cropped from the acquired original images with the same offsets between the bands; offsets were already present due to the parallax phenomenon. The dataset is organized into six folders (B, G, R, RE, NIR, and RGB). Each leaf is represented by one RGB image and five corresponding multispectral band images, enabling multimodal analysis and machine learning for grapevine disease detection. Each image filename encodes acquisition and annotation information as follows: Characters 1–2: acquisition year (21 = 2021, 22 = 2022, 23 = 2023, 24 = 2024). Character 3: image type/band (0 = RGB, 1 = B, 2 = G, 3 = R, 4 = RE, 5 = NIR). Character 4: class (J = Grapevine Yellows, T = Healthy, S = Esca, E = Leafroll, D = Discoloration). Character 5: illumination condition (0 = ambient light, G = additional left halogen spotlight, D = additional right halogen spotlight, 2 = additional both left and right halogen spotlightsl). Characters 6–9: image identifier, numbered sequentially from 0000. Character 10: relabelling status. After image acquisition, all leaves were independently reviewed by expert viticulturists on the recorded RGB images. A value of 1 indicates that the expert confirmed the original field label, 0 indicates that the original label was considered incorrect based on the information visible in the RGB image, and D indicates that the sample was reclassified as Discoloration. This dataset complements the "Multi-annual spectral data of Chardonnay grapevine leaves" dataset published on Recherche Data Gouv. While the previous dataset contains spectral measurements, the present dataset provides multispectral images acquired from the same grapevine leaves, enabling multimodal analyses that combine spectral signatures with image-based information. Note, however, that there is no bijection between the respective files.
Why it matches plant phenotyping methodsブドウ葉の病徴をマルチスペクトル画像で取得し、専門家ラベル付きの疾病認識用データセット／ベンチマークとして提供しており、植物状態の画像ベース表現型計測が中心である。
abstractWe present a dataset of multispectral images of grapevine leaves collected over four years (2021–2024).
Plant disease detection under complex climatic conditions and cross-crop scenarios remains a critical challenge. To address this, we propose a novel SimAM-Inception-StyleRandomization (SIS)-YOLOv11 algorithm based on YOLOv11n for early/late blight detection on potato and tomato leaves. Our core innovations are: 1) A C3k2-SSI module integrating Style Randomization, Inception architecture, and SimAM attention to enhance cross-crop generalization; 2) A Fusion-InceptionConv module for fine-grained feature extraction under rainfall/haze noise; 3) SPPF-Inception and C2PSA-IS modules to optimize multi-scale feature fusion; 4) DepGraph pruning to reduce 47.82% parameters while improving performance. Experiments show that the pruned SIS-YOLOv11 outperforms YOLOv11n by 3.7% in precision, 6.6% in recall, 5.4% in mAP50, and 7.9% in mAP50-95, and surpasses mainstream models (Faster R-CNN, SSD, etc.). This study provides a robust, lightweight solution for automated cross-crop disease detection in complex agricultural environments.
Why it matches plant phenotyping methodsジャガイモとトマト葉の病害状態を画像から検出する新規アルゴリズムを開発し、性能比較・軽量化まで行っており、植物フェノタイピング手法が中心である。
abstractwe propose a novel SimAM-Inception-StyleRandomization (SIS)-YOLOv11 algorithm based on YOLOv11n for early/late blight detection on potato and tomato leaves.
Reproduction assets foundThe paper's image dataset (potato/tomato leaf disease images with annotations and climate-noise augmentation) is explicitly declared publicly available on Baidu AI Studio. No author code or trained model deposit is stated.Dataset · publicData Availability: All image datasets used and analyzed in this study are publicly available from the Baidu AI Studio dataset repository at the URL: https://aistudio.baidu.com/datasetdetail/245434 .Open asset ↗Baidu AI Studio · 245434lines:1-133Code / dataset availability confirmedOpenAlex · Europe PMC · checked 14 Sept 2026
Yellow rust (YR) is a major threat to both bread and durum wheat production, often causing substantial yield losses. Conventional visual scoring of YR severity, while widely adopted, is labor-intensive, time-consuming, and prone to human error. In this study, we evaluated the predictability (PA), defined as the correlation between predicted and observed values, using genomic and phenomic data for YR severity under multiple prediction scenarios in two biparental wheat populations (bread and durum). YR scoring was conducted on two dates, with YR severity visually assessed while unmanned aerial vehicle (UAV)-based high-throughput phenotyping (HTP) data were collected using a multispectral camera. HTP data were processed to extract spectral wavelengths and vegetation indices (VIs), and all lines were also genotyped using SNP arrays. We tested a diverse set of models, including parametric, machine learning, and deep learning approaches. PA increased markedly when HTP-derived data were used compared with genomic markers alone. For example, support vector regression (SVR) improved from 0.35 (markers only) to 0.87 (wavelengths only). However, integrating genomic and phenomic data did not yield further improvements, as models often plateaued when using HTP-derived features alone. Cross-crop prediction demonstrated promising generalization across bread and durum wheat, achieving PA values up to 0.83. For this last task, best linear unbiased prediction (BLUP) and multilayer perception (MLP) consistently provided robust performance across scenarios. These findings highlight the strong potential of UAV-based HTP for rapid, scalable, and accurate prediction of YR severity in wheat. While genomics retains broad utility for breeding, the practical integration of phenomics and AI-driven prediction pipelines will ultimately depend on breeding program strategies, resources, and objectives.
Why it matches plant phenotyping methodsUAV multispectral HTPによる小麦黄さび病重症度の推定と、複数の予測モデルの比較・検証が研究の中心であり、植物病害状態を直接推定する実質的なフェノタイピング手法研究である。
abstractHTP data were processed to extract spectral wavelengths and vegetation indices (VIs)
Reproduction assets foundThe article's Data Availability statement deposits the datasets generated and analyzed in this study (yellow rust phenotyping with UAV spectral data and genomic markers in bread and durum wheat) in the CIMMYT repository under DOI 10.71682/10549375, which is an allowed URL. No author analysis code or trained model is avDataset · publicand scalable strategy for YR assessment in wheat breeding.
Funding
The authors gratefully acknowledge financial support from the Government of Mexico through
the “MasAgro – Cultivos para México” initiative.
Data Availability
The datasets generated and/or analyzed during the current study are available in the CIMMYT
repository: https://doi.org/10.71682/10549375.Acknowledgements
We are deeply grateful to Julio Huerta-Espino for his guidance and support throughout all stages
of this manuscript. We also thank Hedilberto Velásquez Miranda for his valuable assistance with
rust visual score phenotyping, and Neftalí Cruz Pérez for his dedicated support in trial sowing and
field management.
Conflict Open asset ↗10.71682/10549375pdf-raw-page:30 lines:1-37Plant phenotyping relevance match · UnverifiedCrossref · checked 15 Sept 2026
Context: Early identification of plant diseases plays a crucial role in enhancing crop productivity and promoting sustainable agricultural practices. Advances in artificial intelligence and web-based technologies have paved the way for smart systems capable of automatically diagnosing diseases in crops like rice and sugarcane. Objective: This research focuses on developing a smart plant disease diagnosis system that integrates deep learning techniques with a MERN (MongoDB, Express.js, React.js, Node.js) stack to provide accurate, real-time classification of rice and sugarcane leaves diseases through a user-friendly web interface. Method: The proposed framework employs a Convolutional Neural Network (CNN) built with PyTorch and trained using a carefully curated dataset of diseased rice and sugarcane leaf images. The developed model was incorporated into a web application built using the MERN stack to enable seamless frontend-backend communication and real-time disease prediction. The model’s effectiveness was assessed using evaluation metrics such as precision, recall, F1-score, and confusion matrix analysis. Results: The CNN model achieved high classification performance, with an average class accuracy of 95.92%, overall classification accuracy of 91.83%, average precision of 91.85%, average recall of 92.05%, and average F1-score of 91.86%. Confusion matrix analysis further validated the model’s efficiency in accurately recognizing rice and sugarcane leaves diseases. The integrated web platform demonstrated efficient and user-friendly real-time disease prediction capabilities. Conclusions: The developed AI-based plant disease detection system highlights the effectiveness of integrating deep learning techniques with modern web technologies to support scalable agricultural solutions. The system provides a practical solution for farmers and agronomists seeking early and accurate crop disease detection. Future enhancements may include multilingual support, mobile application integration, and agronomic advisory modules to further advance precision agriculture initiatives.
Why it matches plant phenotyping methods葉画像から植物病害状態を分類するCNNモデルとリアルタイムWeb基盤の開発・評価が研究の中心であり、植物表現型取得手法に該当する。
abstractThis research focuses on developing a smart plant disease diagnosis system that integrates deep learning techniques with a MERN (MongoDB, Express.js, React.js, Node.js) stack to provide accurate, real-time classification of rice and sugarcane leaves diseases through a user-friendly web interface.
Accurate and reliable diagnosis of grape leaf diseases is essential for sustainable viticulture, enabling timely intervention, reducing economic losses, and supporting precision crop management. Although deep learning (DL) models have demonstrated remarkable classification performance, their reliability under real-world field conditions remains insufficiently explored. In particular, confidence estimates often fail to reflect true predictive correctness when models are exposed to distributional shifts, limiting their practical applicability. To address this challenge, this study proposes a confidence- and uncertainty-aware DL framework for grape leaf disease diagnosis that extends evaluation beyond conventional accuracy-based metrics. Two publicly available grape leaf datasets were employed for stratified five-fold cross-validation in binary and multiclass classification tasks, while a third independently collected dataset was reserved exclusively for leakage-free external validation. EfficientNet-B0 and MobileNetV3-Large were evaluated under four inference configurations: raw inference, temperature scaling (TempScaling), Monte Carlo dropout, and an ensemble strategy combining uncertainty estimation with calibration. External validation demonstrated that both architectures maintained discriminative capability under domain shift. Under ensemble inference, EfficientNet-B0 achieved an accuracy of 73.8%, a macro-F1 score of 73.3%, a Matthews correlation coefficient (MCC) of 0.468, and a receiver operating characteristic area under the curve (ROC-AUC) of 0.804, while MobileNetV3-Large achieved 71.8% accuracy, 71.2% macro-F1, an MCC of 0.429, and a ROC-AUC of 0.787. Despite these promising results, raw predictions exhibited substantial overconfidence, with Expected Calibration Error (ECE) values of 0.287 and 0.312 for EfficientNet-B0 and MobileNetV3-Large, respectively. TempScaling markedly improved calibration quality, reducing ECE to 0.038 and 0.042 without affecting classification performance. Ensemble inference further enhanced the balance between predictive discrimination and reliability. The results demonstrate that strong classification performance alone is insufficient for trustworthy deployment in agricultural environments. Confidence calibration and uncertainty quantification provide complementary information for identifying overconfident predictions and improving decision reliability under field variability. The proposed framework offers a reliability-oriented approach for developing trustworthy artificial intelligence systems for grape leaf disease diagnosis in precision agriculture.
Why it matches plant phenotyping methodsブドウ葉の病徴を画像から診断する深層学習手法を開発し、信頼度校正・不確実性推定と外部検証を中心に評価しているため、植物フェノタイピング手法として適格。
abstractthis study proposes a confidence- and uncertainty-aware DL framework for grape leaf disease diagnosis
Plant phenotyping relevance match · UnverifiedCrossref · Europe PMC · checked 15 Sept 2026
Rising temperatures and changing weather conditions are accelerating the spread of plant diseases and increasing the threat to global food security. Reliable detection of leaf diseases is therefore essential to protect crop yields and ensure food quality. Deep learning has proven to be a powerful tool for classifying leaf diseases across various crops. Due to the natural variability of plants, plant diseases often appear in irregular structures. Surface unevenness, folds, or dirt particles are common in field images and can be mistakenly identified as important features by convolutional neural networks (CNNs). This is a challenge that has not been sufficiently addressed in previous studies. This study proposes a novel deep learning approach that takes into account both the specific visual characteristics of plant diseases and potential disturbances in the microstructure, such as surface irregularities or prominent leaf veins, which may mislead the model. Using stratified five-fold cross-validation on a peer-reviewed dataset, which comprises 2,801 images of radish leaves across five classes (healthy, three disease classes: mosaic virus, black leaf spot, and downy mildew, and one pest-affected class: flea beetle), the proposed method achieved an average and balanced accuracy of 99.86%, establishing a new dataset-level benchmark in the field and demonstrating its effectiveness. The results indicate that the proposed approach may provide a promising basis for future applications in agricultural field monitoring, automated sorting and post-harvest quality control, offering potential to reduce both food waste and associated costs.
Why it matches plant phenotyping methods植物の葉画像から病害状態を分類する深層学習手法の開発・交差検証が研究の中心であり、植物表現型（病害状態）の取得・推定に該当する。
abstractThis study proposes a novel deep learning approach that takes into account both the specific visual characteristics of plant diseases and potential disturbances in the microstructure
Fusarium head blight (FHB) is a major mycotoxigenic disease of wheat, causing yield and quality losses and deoxynivalenol contamination. Rapid, non-destructive tools are needed to detect FHB, monitor wheat physiological responses, and evaluate sustainable management strategies, including biological control agents. Although vegetation spectroscopy is widely used for high-throughput phenotyping, most spectral studies focus on binary disease detection, while the capacity of hyperspectral data to capture concurrent host–pathogen–biocontrol responses across leaf and canopy scales remains underexplored. Here, we tested a full-range (400–2400 nm) hyperspectral phenotyping framework to track early interactions among winter wheat, FHB, and Trichoderma gamsii T6085. Two cultivars, Bingo and Rebelde, with higher and lower FHB susceptibility, respectively, were treated with a chemical fungicide (Chem) or T. gamsii T6085 (Bioc) under FHB pressure. Leaf- and canopy-level spectra were acquired at 2, 5, and 14 days post-inoculation, alongside gas exchange, water status, and chlorophyll measurements. Permutational multivariate analysis of variance (PERMANOVA) tested whole-spectrum effects, partial least squares discriminant analysis (PLS-DA) explored class separability, and partial least squares regression (PLSR) estimated physiological traits. PERMANOVA detected genotype × inoculation × treatment interactions from 5 days post-inoculation at leaf and canopy levels. PLS-DA revealed treatment- and cultivar-dependent spectral fingerprints, but overall low-to-fair validation performance indicates that these class-specific patterns should be interpreted as exploratory and not as evidence of operational treatment discrimination. PLSR provided high accuracy for chlorophyll content and osmotic potential, moderate accuracy for CO 2 -assimilation traits, and poor accuracy for transpiration and leaf water potential. While the workflow is scalable as an experimental and analytical framework, its operational deployment will require broader validation across sites, seasons, cultivars, disease-pressure conditions, and sensing platforms.
Why it matches plant phenotyping methods小麦のFHB・生物防除応答を対象に、葉・群落ハイパースペクトル取得、分類、検証、形質推定を統合したフェノタイピング枠組みが中心である。
abstractwe tested a full-range (400–2400 nm) hyperspectral phenotyping framework to track early interactions among winter wheat, FHB, and Trichoderma gamsii T6085.
Detecting cotton leaf diseases in open-field environments is challenging due to cluttered backgrounds, scale variation, and irregular lesion morphology. Conventional detectors rely on isotropic receptive fields and coupled box-regression losses, which limit their ability to localize elongated lesions with poorly defined boundaries. We present an anisotropic boundary-aware detection framework that propagates high-frequency boundary information across four successive pipeline stages. In the backbone, an Anisotropic Morphological Contrast Aggregation module (AMCA) enhances direction-aware representation and lesion-background contrast via re-parameterizable strip convolutions and high-frequency residual extraction. A Dynamic Semantic Boundary Transfer mechanism (DSBT) then captures boundary priors from shallow layers before they are lost to downsampling and injects them into the neck. A Morphological-Spectral Synergistic Feature Pyramid Network (MFS-FPN) preserves these cues during multi-scale fusion through spatial-domain operations compatible with edge hardware. Finally, an Anisotropic Boundary-Decoupled IoU loss (ABD-IoU) independently penalizes each of the four box boundaries and sustains optimization signals in high-IoU regimes via a logarithmic modulation factor. On the self-constructed Complex Cotton Leaf Disease dataset (CCLD; 6,856 images, 6 classes), the method achieves 78.50% mAP@50 and 65.00% mAP@50:95, improving the YOLOv11n baseline by 4.80% and 2.70% with only 2.73 M parameters at 202 FPS. Cross-domain evaluations on PlantDoc and RWD confirm consistent improvements. The framework runs in real time on NVIDIA Jetson edge platforms with INT8 quantization.
Why it matches plant phenotyping methods綿花葉の病斑・病害状態を画像から検出する手法を開発し、複数データセットとベースラインで性能検証しているため、植物表現型取得が中心である。
abstractWe present an anisotropic boundary-aware detection framework that propagates high-frequency boundary information across four successive pipeline stages.
Reproduction assets foundThe authors explicitly state that their source code, trained models, and implementation details are publicly available, and the data availability statement points to the same repository, which hosts the self-constructed CCLD cotton leaf disease dataset (6,856 images, 6 classes) used for the paper's phenotyping/disease-Code · publicFurthermore, to facilitate future research, our source code, trained models, and implementation details have been made publicly available at https://github.com/DynaVLA/ABAD-CLD .Open asset ↗DynaVLA/ABAD-CLDlines:331-343Dataset · publicThe datasets presented in this study can be found in online repositories. The names of the repository/repositories and accession number(s) can be found below: https://github.com/DynaVLA/ABAD-CLD .Open asset ↗DynaVLA/ABAD-CLDlines:1278-1317Plant phenotyping relevance match · UnverifiedEurope PMC · checked 5 Sept 2026
Abstract Purpose Symptom-triggered crop protection acts only after damage is committed, and the intervention window has narrowed. This review reframes pre-symptomatic sensing from a detection problem into a closed decision loop, establishing the physiological lead time of a signal, set against its detection confidence and the latency of the response it can trigger, as the organizing principle for anticipatory, site-specific decision-making. Methods A systematic-narrative synthesis was conducted across major bibliographic databases through June 2026. Studies reporting pre-symptomatic capability under field or realistic conditions were retained and coded onto a coupled lead-time × confidence × actionability framework spanning sensing, inference, and actuation. Results Optical modalities were found to dominate the evidence base, while electrophysiological and volatile signals extended achievable lead time. Single modalities were insufficient to separate biotic from abiotic stress, motivating heterogeneous fusion. Edge inference and temporal onset forecasting remained immature, detection confidence was rarely quantified, and the sensing-to-actuation loop was seldom closed. Reported performance degraded sharply from laboratory to field, particularly in perennial and smallholder systems. Conclusions A unifying Pre-Symptomatic Crop Intelligence framework is proposed, governed by the principle that system value is bounded by the weakest of lead time, detection confidence, and response latency; priorities identified include lead-time-labeled benchmarks, uncertainty-aware inference, field-robust fusion, and economic evaluation for perennial crops.
Why it matches plant phenotyping methods植物の病害・ストレス状態を早期に推定するセンシング手法を体系的に整理し、検出リードタイム、信頼度、融合推論、ベンチマークを評価するレビューであり、植物状態の取得・推定方法が中心である。
abstractThis review reframes pre-symptomatic sensing from a detection problem into a closed decision loop
Eggplant (Solanum melongena) is a major cash crop, yet field detection of its pests and diseases remains difficult because disease evidence is simultaneously occluded by foliage, blurred at lesion boundaries, and highly variable in scale. Fruit rot is especially challenging: the waxy epidermis and purple anthocyanin-rich surface reduce chromatic contrast, while infection spreads gradually from water-soaked tissue to necrotic tissue, producing diffuse borders between diseased and healthy regions. In this work, we reframe eggplant disease detection through a context-boundary-scale coupling principle, which states that accurate field detection should jointly model incomplete contextual cues, ambiguous lesion boundaries, and scale-varying symptom morphology rather than optimize these cues independently. ISA-YOLO is proposed as an implementation of this principle on top of YOLOv13 through coordinated context modeling, boundary-aware aggregation, and progressive multi-scale fusion. Experiments on two public datasets show that ISA-YOLO achieves 78.1 and 77.7% mAP at 30.66 and 31.74 FPS, outperforming mainstream detectors in overall trade-off between accuracy and speed. After pruning and quantization, inference speed increases to about 75 FPS while maintaining strong accuracy. These results indicate that the proposed principle provides an effective pathway for accurate and deployable eggplant pest and disease detection in smart agriculture.
Why it matches plant phenotyping methodsナスの病害・害虫を画像から検出するISA-YOLOモデルの開発と性能評価が研究の中心であり、植物の病害状態を直接推定するフェノタイピング手法に該当する。
titleA high-performance detection model ISA-YOLO for eggplant pests and diseases.
Reproduction assets foundThe paper uses four public Roboflow image datasets (BISU, UTM, Papaya, Tomato) and states that supporting data and code are publicly available on Zenodo, all with explicit URLs in the Data availability section.Dataset · publicwas supported by National Natural Science Foundation of China grants (62472269, 62072291).
Data availability
This research relies entirely on four publicly available detection datasets: Papaya ( https://universe.roboflow.com/hm-xsfz9/papaya-eswlk-r2ydy ), Tomato ( https://universe.roboflow.com/test-fqgof/tomato-rotten ), BISU ( https://universe.roboflow.com/bohol-island-state-university-vgjlb/eggplant-disease-detection ), and UTM ( https://universe.roboflow.com/utm-xpfqs/eggplant-disease-detection-5fuqv ). The authors believe that the creators of these public datasets complied with relevant institutional, national, and international guidelines and legislation when collecting the data. No newOpen asset ↗eggplant-disease-detectionlines:1509-1560Dataset · publicty
This research relies entirely on four publicly available detection datasets: Papaya ( https://universe.roboflow.com/hm-xsfz9/papaya-eswlk-r2ydy ), Tomato ( https://universe.roboflow.com/test-fqgof/tomato-rotten ), BISU ( https://universe.roboflow.com/bohol-island-state-university-vgjlb/eggplant-disease-detection ), and UTM ( https://universe.roboflow.com/utm-xpfqs/eggplant-disease-detection-5fuqv ). The authors believe that the creators of these public datasets complied with relevant institutional, national, and international guidelines and legislation when collecting the data. No new data collection was performed for this research. The authors confirm that the use of these datasets in thOpen asset ↗eggplant-disease-detection-5fuqvlines:1509-1560Dataset · publicof the outcomes of the Provincial Undergraduate Training Program on Innovation and Entrepreneurship (Number: S202510108100). This work was supported by National Natural Science Foundation of China grants (62472269, 62072291).
Data availability
This research relies entirely on four publicly available detection datasets: Papaya ( https://universe.roboflow.com/hm-xsfz9/papaya-eswlk-r2ydy ), Tomato ( https://universe.roboflow.com/test-fqgof/tomato-rotten ), BISU ( https://universe.roboflow.com/bohol-island-state-university-vgjlb/eggplant-disease-detection ), and UTM ( https://universe.roboflow.com/utm-xpfqs/eggplant-disease-detection-5fuqv ). The authors believe that the creators of these publicOpen asset ↗papaya-eswlk-r2ydylines:1509-1560Dataset · publicnovation and Entrepreneurship (Number: S202510108100). This work was supported by National Natural Science Foundation of China grants (62472269, 62072291).
Data availability
This research relies entirely on four publicly available detection datasets: Papaya ( https://universe.roboflow.com/hm-xsfz9/papaya-eswlk-r2ydy ), Tomato ( https://universe.roboflow.com/test-fqgof/tomato-rotten ), BISU ( https://universe.roboflow.com/bohol-island-state-university-vgjlb/eggplant-disease-detection ), and UTM ( https://universe.roboflow.com/utm-xpfqs/eggplant-disease-detection-5fuqv ). The authors believe that the creators of these public datasets complied with relevant institutional, national, and internatOpen asset ↗tomato-rottenlines:1509-1560Code · publicarch. The authors confirm that the use of these datasets in this study is fully compliant with their original licenses and ethical guidelines. The final images presented in the article accurately reflect the original data and meet community standards. The data and code supporting the conclusions of this article are available at https://zenodo.org/records/19425300 .
Declarations
Ethics approval and consent to participateOpen asset ↗Zenodo · 19425300lines:1509-1560Plant phenotyping relevance match · UnverifiedEurope PMC · Crossref · checked 15 Sept 2026
Plant diseases lead to substantial yield losses and pose a persistent threat to global food security, creating an urgent demand for high-throughput, accurate, scalable, and non-destructive disease monitoring approaches. Remote sensing has emerged as a powerful tool, yet progress in plant disease detection remains fragmented across various disciplines, tasks, sensing methods, and data modalities. This review introduces a hex- view perspective to synthesise remote sensing–based plant disease detection within a cohesive conceptual framework. Instead of treating sensing technologies, algorithms, and datasets independently, the hex-view incorporates six interconnected dimensions that jointly capture how biological processes, measurement scale, and data characteristics constrain disease detectability, including when detection is possible and how reliably it can be achieved. The hex-view framework comprises six interconnected dimensions and forms an integrated framework called BTSCAD: (1) Biology (B): Plant-pathogen interactions constituting the biological foundation of disease development and expression. (2) Task (T): The diverse disease detection tasks and their corresponding research objectives. (3) Sensor (S): The sensing modalities that define the data acquisition type and richness of captured information. (4) Condition (C): The environmental conditions, sensing platforms, and spatial scales that shape disease observations and bridge controlled experiments and real-world deployment across leaf, canopy, plot and regional scales. (5) Algorithm (A): The classical and state-of-the-art data analysis algorithms used to extract disease-related information from sensor data. (6) Dataset (D): The data sources that underpin model development, evaluation, and generalisability. The hex-view perspective provides a clear framework for interpreting previous research and identifying future research directions. This review lays a structured foundation for developing robust, interpretable, and transferable disease detection systems, supporting advancements in precision agriculture, high-throughput phenotyping, and sustainable crop production.
Why it matches plant phenotyping methods植物病害を対象としたリモートセンシングによる観察・検出法を、センサー、条件、アルゴリズム、データセットの観点から体系化する方法論レビューであり、植物状態の推定手法が中心である。
abstractThis review introduces a hex- view perspective to synthesise remote sensing–based plant disease detection within a cohesive conceptual framework.
India’s economy is primarily based on agriculture. Agriculture has significant contribution in nation’s GDP. Food security and employment significantly influenced by agriculture. However factors like uncertain weather conditions, poor quality of seeds and plant diseases impact on agriculture productivity. Computer vision and DL algorithms are most crucial components of precision agriculture. Early detection can improve decision making, maximize pesticide use, and preserve harvests. Using CNN architectures, segmentation-based approaches, handcrafted feature-based methods, and hybrid approaches incorporating Machine Learning and Deep Learning this study seek to provide review of recent publications from 2020 to 2026. The review was carried out using a variety of publications with different datasets, methodologies, and outcomes. The findings show that DL, especially CNN and transfer learning models, performed better than machine learning techniques. It points out several significant problems, such as dataset imbalance, insufficient generalization, computing inefficiency, and a dearth of real-world data. Future research topics are also suggested which includes IoT-driven real-time solutions, lightweight architecture, domain adaption, and multimodal imaging. This review aims to develop plant disease detection technologies that are more dependable, scalable, and field deployable.
Why it matches plant phenotyping methods植物葉の病徴を画像から検出する機械学習・深層学習手法をレビューおよび実験的に扱っており、植物フェノタイピング手法が中心である。
titlePlant Leaf Disease Detection Using Machine Learning and Deep Learning: A Review and Experimental Study
To address this challenge, we propose StyleGAN3-T, the translation-equivariant alias-free variant of StyleGAN3, as a generative framework for producing high-fidelity synthetic plant disease images, integrated with a hybrid Swin Transformer-ResNet50 classifier for precise recognition. Accurate detection of plant leaf diseases is essential for sustainable agriculture and early intervention. However, deep learning models often struggle with small, imbalanced datasets that limit generalization and robustness. To address this challenge, we propose StyleGAN3-T, a novel alias-free generative framework for producing high-fidelity synthetic plant disease images, integrated with a hybrid Swin Transformer-ResNet50 classifier for precise recognition. The proposed approach ensures translation-equivariant, artifact-free image synthesis and enhanced feature diversity. A balanced dataset of 18,000 images was developed by combining real and StyleGAN3-T-generated samples. In pooled GAN benchmarking, StyleGAN2-ADA achieved the strongest generative-quality metrics, whereas StyleGAN3-T was selected as the preferred augmentation model because its alias-free synthesis and spatial consistency yielded superior downstream classification performance in the proposed pipeline.
Why it matches plant phenotyping methods植物病害画像を合成・認識する画像解析手法が研究の中心であり、植物の病害状態を画像から推定するフェノタイピング手法に該当する。
abstractwe propose StyleGAN3-T, a novel alias-free generative framework for producing high-fidelity synthetic plant disease images, integrated with a hybrid Swin Transformer-ResNet50 classifier for precise recognition.
Reproduction assets foundThe paper's grape leaf disease image inputs are two publicly available Kaggle datasets explicitly named in the Data Availability statement. No author code, models, or synthetic dataset deposit is provided; other processed data is request-only.Dataset · publictechnical guidance. Y.L. and A.W. supervised the study, provided critical revisions, and contributed to the interpretation of results. All authors reviewed and approved the final manuscript.
Data availability
The datasets analyzed during the current study are publicly available from Kaggle: Grapevine Disease Dataset (Original) (https://www.kaggle.com/datasets/rm1000/grape-disease-dataset-original; accessed 13 March 2026; license: MIT) and Grape Leaf Disease 4 Class (https://www.kaggle.com/datasets/jawadulkarim117/grape-leaf-disease-4-class; accessed 13 March 2026; license: CC0: Public Domain). Additional processed metadata, label-harmonization records, dataset split definitions, and other daOpen asset ↗Kaggle · rm1000/grape-disease-dataset-originallines:549-576Dataset · publicthors reviewed and approved the final manuscript.
Data availability
The datasets analyzed during the current study are publicly available from Kaggle: Grapevine Disease Dataset (Original) (https://www.kaggle.com/datasets/rm1000/grape-disease-dataset-original; accessed 13 March 2026; license: MIT) and Grape Leaf Disease 4 Class (https://www.kaggle.com/datasets/jawadulkarim117/grape-leaf-disease-4-class; accessed 13 March 2026; license: CC0: Public Domain). Additional processed metadata, label-harmonization records, dataset split definitions, and other data used and/or analyzed during the current study are available from the corresponding author on reasonable request.
Declarations
Competing inOpen asset ↗Kaggle · jawadulkarim117/grape-leaf-disease-4-classlines:549-576Plant phenotyping relevance match · UnverifiedCrossref · checked 14 Sept 2026
Artificial intelligence (AI) has emerged as a transformative tool for plant health monitoring, offering new opportunities for scalable, timely, and data-driven pest and disease management in agriculture. This review provides a comprehensive synthesis of AI-based methods for pest and plant disease detection, systematically organizing existing literature across sensing modalities, learning paradigms, and deployment scales. We distinguish between population-level pest monitoring, plant-centric visual inspection, and field-scale surveillance, as well as between post-symptomatic disease recognition and pre-symptomatic detection enabled by spectral imaging technologies. Beyond summarizing recent advances, this work places strong emphasis on critical analysis, discussing fundamental limitations related to data scarcity, domain shift, generalization under field conditions, and the challenge of disentangling biotic from abiotic stress factors. The review further examines the distinction between correlation-driven AI predictions and causal disease understanding, positioning AI as a complementary decision-support tool alongside established diagnostic methods. Building on these insights, we outline key future research directions, including multimodal sensor fusion, explainable and trustworthy AI, edge-based deployment for real-time monitoring, and the development of foundation models for unified agricultural intelligence. This review aims to serve as both an accessible entry point and a critical reference for advancing AI-driven plant health management.
Why it matches plant phenotyping methods植物の病害・害虫状態を画像・スペクトルなどで検出するAI手法を対象としたレビューであり、植物状態の取得・推定手法が中心である。
titleA Review on Artificial Intelligence Methods for Plant Disease and Pest Detection
Plant phenotyping relevance match · UnverifiedOpenAlex · Crossref · Europe PMC · checked 5 Sept 2026
Introduction: Cucumber diseases severely affect yield and quality. Deep learning-based analysis of microscopic pathogen images enables high-throughput identification and counting of pathogens, thereby facilitating early disease detection. However, most existing pathogen-recognition methods focus mainly on qualitative identification and cannot quantitatively characterize pathogen morphology, which limits their ability to reveal the developmental characteristics and functional differentiation of different infection structures from the perspective of pathogen morphology-function adaptability. Methods: To address this issue, this study focused on cucumber powdery mildew and downy mildew and achieved precise extraction and characterization of pathogen morphological features based on microscopic image instance segmentation. First, an in situ stained microscopic image dataset of cucumber pathogens was constructed. Second, an instance segmentation model, SWS-YOLO11n, was developed for cucumber pathogen infection structures to accurately identify and segment different infection structures in microscopic images. Finally, morphological analysis methods were used to quantitatively extract and characterize pathogen infection-structure features. Results: values greater than 0.90. In addition, category-wise morphological distribution analysis showed that different infection-structure types exhibited clear differentiation in size, contour complexity, and elongation. Discussion: This study provides an effective tool for high-throughput phenotyping of cucumber pathogen infection structures. The proposed method offers methodological support for disease diagnosis, pathogen morphological phenotyping, and precision disease management in horticultural production.
Why it matches plant phenotyping methods顕微鏡画像のインスタンスセグメンテーションを開発し、キュウリ病原体の感染構造の形態形質を定量抽出する手法が中心である。
abstractan instance segmentation model, SWS-YOLO11n, was developed for cucumber pathogen infection structures to accurately identify and segment different infection structures in microscopic images.
Timely identification of crop diseases is imperative in precision agriculture to intervene at the right time and maximise yield sustainability. Despite achieving high accuracy, deep learning models are ineffective for rare plant disease classes, mainly due to severe data imbalance and insufficient training samples. Currently, most generative augmentation methods are designed to enhance either visual realism or data diversity, while ignoring methods that are sensitive to early-stage diseases or that control disease progression. In this paper, we propose RareAgriDetectAI, which comprises RareSimGAN, a generative deep learning framework for synthesising images of rare diseases, and a latent traversal mechanism that collaboratively visualises disease progression with increasing severity. We introduce a pipeline for synthesising realistic crop images for data augmentation. We augment the representation of rare classes using synthetic samples in a ResNet50-based classification pipeline. A strong experimental setup, relying on controlled baselines and synthetic-aided training scenarios, was employed. Evaluation on a real dataset shows significant improvement for the rare class ToLCNDV, with recall increasing from 0.42 in the baseline to 0.81 after synthetic augmentation. In contrast, the performance on other common disease classes remains stable. SSIM, Inception Score, and FID metrics were shown to validate generative quality. At the same time, an ablation study identified a suitable augmentation threshold at which sufficient performance is achieved without excessive synthetic data generation. The results further indicate improvements in feature diversity, which translate into earlier disease recognition (before full disease onset) and improved classification robustness with RareSimGAN. The post-framework combines generative modelling and latent space exploration to deliver a low-cost, scalable, and data-efficient solution for agricultural AI systems. RareAgriDetectAI utility can assist in the proactive monitoring of crop health and simulate rare disease scenarios to drive learning that can aid reliable, interpretable deep learning applications in precision agriculture.
Why it matches plant phenotyping methods希少作物病害の画像合成、病徴進行の可視化、早期病害認識を中心とする画像ベースの植物病害フェノタイピング手法であり、生成品質と分類性能も検証している。
abstractwe propose RareAgriDetectAI, which comprises RareSimGAN, a generative deep learning framework for synthesising images of rare diseases, and a latent traversal mechanism that collaboratively visualises disease progression with increasing severity.
Reproduction assets foundThe paper's data availability statement lists the public plant-disease image datasets used (PlantVillage, AI Challenger mirror, PlantDoc, Tomato Leaf Disease), and the code availability statement provides an authors' GitHub repository containing the RareSimGAN implementation, preprocessing, classifier training, andGradDataset · publicThe datasets analysed during the current study are publicly available from the following sources:
•PlantVillage dataset:
https://www.kaggle.com/datasets/emmarex/plantdiseaseOpen asset ↗pdf-page:36 lines:1-66Plant phenotyping relevance match · UnverifiedEurope PMC · Crossref · checked 5 Sept 2026
Abstract Crop disease is a major worldwide problem in agricultural production and food security, adversely affecting yield and quality for a variety of plant species. To overcome these drawbacks, this research provides a Double Transfer Learning-based Capsule Network (DTL-CapsNet) approach for automated plant disease classification with multiple crops. Based on the image pre-processing, segmentation, double transfer learning, and Capsule Networks technologies, the proposed framework extracts discriminative features of the diseases and maintains spatial relations between the leaves symptoms effectively. This double transfer learning approach involves extracting general visual features from pre-trained deep learning models and then fine-tuning these features to classify plant diseases. Capsule Networks then leverage the visual similarity of disease patterns to make the recognition more robust, while simultaneously adding hierarchical part–whole relationships in leaf structures, thereby improving the feature representation. Experiments were performed on a heterogeneous data set consisting of 21,927 leaf images belonging to 17 different healthy and diseased classes of apple, chilli, cotton, corn and potato crops. The experimental results proposed DTL-CapsNet framework is more accurate compared to the traditional CNN-based models and conventional transfer learning models. The proposed method of double transfer learning and Capsule Networks offers an efficient and scalable approach for intelligent plant disease diagnosis, offering significant potential in precision agriculture and real-time crop monitoring systems.
Why it matches plant phenotyping methods葉画像から植物病害状態を分類する画像・計算手法が研究の中心であり、提案手法の開発と既存モデルとの比較検証が行われているため。
abstractBased on the image pre-processing, segmentation, double transfer learning, and Capsule Networks technologies, the proposed framework extracts discriminative features of the diseases and maintains spatial relations between the leaves symptoms effectively.
This research introduces a multimodal deep learning framework for early detection of plant pathogens to capture pre-symptomatic biochemical changes in plants while simultaneously modeling the environmental drivers of disease development. A hybrid fusion architecture combines 3D convolutional neural networks for spatial-spectral feature extraction from HSI cubes with transformer-primarily based temporal modeling of climate sequences. Cross-modal attention mechanisms dynamically weight discriminative features, which includes chlorophyll degradation bands and humidity thresholds, to permit joint representation learning. The framework achieved 94.5% accuracy in pathogen detection, outperforming unimodal HSI (84.1%) and climate- only (76.5%) baselines by 10-18 percentage points. Moreover, it detected fungal infections 5-7 days before visual symptom onset and had a 12.3% higher F1-rating compared to the current methods. Field simulations showed that precision application resulted in 41% reduction in fungicide use. By connecting proximal sensing with climatic analytics, this research contributes to precision agriculture by providing timely and eco-friendly pest control of diseases. The multimodal fusion framework is introduced to overcome the limitations of unimodal approaches. It integrates the most appropriate data sources, thus allowing the earliest and most accurate detection of plant pathogens.
Why it matches plant phenotyping methods植物の病害状態をハイパースペクトル画像から抽出するマルチモーダル手法の開発・評価が中心であり、単なる病原体診断や農薬施用試験ではない。
abstractThis research introduces a multimodal deep learning framework for early detection of plant pathogens to capture pre-symptomatic biochemical changes in plants
Early detection of diseases in plants has been identified as a critical factor for ensuring the maintenance of productivity, preventing economic losses, and promoting sustainable agriculture. Traditional manual approaches for diagnosing diseases are time-consuming, subjective, and inappropriate for large-scale and real-time agriculture. In order to overcome the limitations of traditional approaches, the CNN–CBAM–MobileViTNet has been proposed, an efficient attention-guided network by the fusion of Convolutional Neural Networks (CNNs), Convolutional Block Attention Module (CBAM), and Mobile Vision Transformer (MobileViT) for plant diseases recognition.The CNN component is effective in capturing local visual patterns like lesions, discoloration, and texture. The CBAM component is effective in refining the feature representations by focusing on disease-related spatial areas and useful channels. The MobileViTNet branch is useful in capturing contextual relationships from the leaf areas through lightweight transformer blocks. The CNN–CBAM—MobileViTNet is tested on an enhanced dataset with 38 classes of plant diseases and health conditions, splitting data into 70% training, 15% validation, and 15% testing. Significantly, extensive experimental analysis reveals that the test accuracy is 99%, with high precision, recall, and [Formula: see text]1-score values. Training-validation curves show that the model converges stably with little overfitting, while ROC analysis shows high classwise discrimination ability of the model. Hence, the CNN–CBAM–MobileViTNet model is reliable and may be used for real-world applications in smart agriculture and automatic crop disease monitoring systems.
Why it matches plant phenotyping methods植物葉の病徴を画像から分類するCNN・注意機構・Transformer融合モデルを開発し、38クラスの病害・健全状態で性能評価しており、病害状態の表現型取得・推定が中心である。
abstractthe CNN–CBAM–MobileViTNet has been proposed, an efficient attention-guided network by the fusion of Convolutional Neural Networks (CNNs), Convolutional Block Attention Module (CBAM), and Mobile Vision Transformer (MobileViT) for plant diseases recognition.
Ustilago maydis is a biotrophic fungus that causes smut disease in maize, leading to tumor formation on aerial parts of the plant. While U. maydis has been a model for plant-fungal interaction studies, no tool has existed to automatically quantify infection symptoms under laboratory conditions for deep learning analysis. To address this, we developed a rotating camera system that captures videos of plants under customized lighting and shutter settings. These videos were used to train machine learning models to distinguish between healthy and infected plants. Two detection approaches have been presented. In the first approach, by employing a naive masking technique and combining classical machine learning classifiers utilizing handcrafted features, the model achieved a reasonable performance, with an Area Under the Curve (AUC) of maximum 0.90 on the Receiver Operating Characteristic in one of the classifiers, showing relatively high sensitivity and specificity. The second approach utilizes pre-trained YOLO11 model for object detection and further classification. The YOLO11-based approach outperforms traditional methods, achieving near-perfect validation accuracy (AUC: 0.99-1.00), demonstrating its superiority for real-time, scalable applications. Our toolset, featuring a cost-efficient and customizable scanning platform with open building-blocks design, provides a valuable resource as a proof-of-concept for unbiased disease symptom detection and scoring, with potential applications in other plant pathology studies. This point enables easy replication and adaptation by other research laboratories which makes the platform robust, scalable and practical beyond our specific application.
Why it matches plant phenotyping methodsトウモロコシの感染症状を画像から自動検出・スコア化する低コスト撮像プラットフォームと機械学習手法の開発が中心であり、植物病害表現型の取得・抽出方法に該当する。
abstractwe developed a rotating camera system that captures videos of plants under customized lighting and shutter settings.
Plant diseases threaten global agriculture, causing 20–40% yield losses and food insecurity. Current diagnostic methods are costly and lack scalability. While deep learning advances plant disease detection, there remains a need for CNNs with simpler architectures, better generalizability, and lower computational cost. This study presents a novel CNN for multi-class classification of 38 diseases. Trained on a public dataset of over 87,000 RGB images, the architecture comprises five convolutional blocks (filters 32–512) with max pooling and dropout (0.25, 0.4), followed by a 1,500-unit dense layer and SoftMax output. Optimized with Adam (lr=0.0001) and categorical cross-entropy, the model achieved 98% training and 96% validation accuracy with approximately 28.7 million parameters significantly fewer than transfer learning architectures. These results demonstrate an effective balance between predictive performance and computational efficiency, positioning the model as a promising tool for real-world agricultural deployment.
Why it matches plant phenotyping methods葉画像から植物病害を分類するCNNの開発と性能評価が研究の中心であり、植物の病害状態を直接推定するため、植物フェノタイピング手法に該当します。
titleLeaf-by-Leaf Diagnosis: A Custom CNN with Pyramidal Feature Extraction for Plant Disease Classification
Reproduction assets foundThe paper's sole qualifying asset is the plant disease image dataset used for all its CNN training/validation measurements: the publicly available New Plant Diseases Dataset (Augmented) on Kaggle, explicitly declared in the Data availability statement. No author code, trained model checkpoints, or other paper-specific Dataset · publict to disclose.
Acknowledgment:
The authors are sincerely grateful to their institutions for their continued support and trust, which greatly contributed to
the completion of this research.
Data availability
The dataset used and analyzed during the current study, “New Plant Diseases Dataset”, is publicly available on Kaggle at:
(https://www.kaggle.com/datasets/vipoooool/new-plant-diseases-dataset?select=New+Plant+Diseases+Dataset%28Augmented%29)
References
[1] P. Arputharaj and K. Karunanithy, "A review on machine learning and deep learning techniques for plant leaf disease
detection and classification with IoT in agriculture industry," Journal of Industrial Information Integration, vol. 50, Open asset ↗Kaggle · vipoooool/new-plant-diseases-datasetpdf-raw-page:11 lines:1-49Dataset · publict to disclose.
Acknowledgment:
The authors are sincerely grateful to their institutions for their continued support and trust, which greatly contributed to
the completion of this research.
Data availability
The dataset used and analyzed during the current study, “New Plant Diseases Dataset”, is publicly available on Kaggle at:
(https://www.kaggle.com/datasets/vipoooool/new-plant-diseases-dataset?select=New+Plant+Diseases+Dataset%28Augmented%29)
References
[1] P. Arputharaj and K. Karunanithy, "A review on machine learning and deep learning techniques for plant leaf disease
detection and classification with IoT in agriculture industry," Journal of Industrial Information Integration, vol. 50, Open asset ↗Kaggle · vipoooool/new-plant-diseases-datasetpdf-raw-page:11 lines:1-49Code / dataset availability confirmedOpenAlex · Europe PMC · Crossref · checked 5 Sept 2026
Sweet potato virus disease (SPVD) is one of the most destructive diseases affecting sweet potato production worldwide, causing severe yield losses and posing a significant threat to food security. Vision-based intelligent diagnosis has emerged as a promising solution for large-scale SPVD monitoring due to its low cost and scalability. However, existing publicly available datasets for SPVD are extremely limited and typically focus on a single task, such as disease classification or lesion segmentation, under constrained imaging conditions. This lack of comprehensive, task-oriented datasets significantly restricts the development, evaluation, and fair comparison of advanced computer vision methods for SPVD analysis. In this study, we present SPVD-Field, a task-oriented multi-task visual dataset suite composed of two independently collected sub-datasets optimized for different computer vision tasks. Rather than constructing a single homogeneous dataset, SPVD-Field is deliberately organized into two complementary task-oriented sub-datasets: SPVD-DET, designed for disease detection with bounding-box annotations, and SPVD-SEG, designed for fine-grained lesion segmentation with pixel-level masks. The two sub-datasets were independently collected using different acquisition protocols optimized for their respective tasks, while sharing a unified semantic definition of SPVD symptoms, crop growth stages, and field environments. SPVD-Field captures substantial real-world variability in imaging scale, viewpoint, illumination, background complexity, and symptom manifestation, reflecting the inherent challenges of fieldbased disease diagnosis. We provide detailed documentation of data acquisition, annotation strategies, and quality control procedures, along with baseline benchmark results for both detection and segmentation tasks to demonstrate the usability and difficulty of the dataset. By offering a structured dataset suite rather than a single-task collection, SPVD-Field aims to support diverse research directions, including detection, segmentation, multi-task learning, and disease severity analysis, and to facilitate reproducible and comparable research in SPVD-related plant phenotyping.
Why it matches plant phenotyping methodsサツマイモの病徴を対象とする画像データセットで、検出・病斑セグメンテーション、データ取得・アノテーション・品質管理、ベンチマークを中心的に提供しており、植物病害状態の画像フェノタイピング手法・データ基盤に該当する。
abstractIn this study, we present SPVD-Field, a task-oriented multi-task visual dataset suite composed of two independently collected sub-datasets optimized for different computer vision tasks.
Reproduction assets foundThe paper's core asset is the SPVD-Field dataset (SPVD-DET detection images with bounding-box annotations and SPVD-SEG segmentation images with pixel-level masks), explicitly deposited in a public repository via the data availability statement with a DOI link.Dataset · publicThe datasets presented in this study can be found in online repositories. The names of the repository/repositories and accession number(s) can be found below: https://dx.doi.org/10.21227/hq1q-jp43 .Open asset ↗10.21227/hq1q-jp43lines:664-703Code / dataset availability confirmedEurope PMC · bioRxiv · checked 15 Sept 2026
Accurate segmentation of plant disease symptoms is essential for crop monitoring and phenotyping, yet it typically requires costly pixel-level annotations. Weakly supervised semantic segmentation (WSSS) alleviates this burden using image-level labels, but its performance depends on the quality of spatial priors such as class activation maps (CAMs). We investigate whether text-guided segmentation with the Segment Anything Model 3 (SAM3) can serve as an alternative weak supervision signal. Three pseudo-mask generation strategies are compared: (i) CAMs refined with SAM or SAM3, (ii) zero-shot text-guided SAM3, and (iii) a hybrid approach combining weak spatial cues with text prompts. The resulting pseudo-masks are used to train a DeepLabV3 model. Text guidance alone matches or outperforms conventional WSSS, achieving up to 0.46 IoU without spatial supervision and 0.61 IoU on a public dataset, although performance is sensitive to text prompt formulation. The hybrid strategy improves robustness, reaching 0.50 IoU on the primary dataset and 0.58 IoU on the additional dataset while reducing prompt sensitivity. Overall, text guidance is a promising alternative to conventional weak supervision, while hybrid approaches provide a more robust solution for plant disease segmentation.
Why it matches plant phenotyping methods植物病害症状の画像セグメンテーション手法を開発・比較し、病斑の疑似マスク生成とセグメンテーション性能を評価しているため、植物フェノタイピング手法が中心です。
abstractAccurate segmentation of plant disease symptoms is essential for crop monitoring and phenotyping
Reproduction assets foundThe paper's own oilseed rape leaf disease image dataset (2,540 RGB images, 601 pixel-level annotations) is explicitly made publicly available on Recherche Data Gouv under DOI 10.57745/R3HZOQ, which is an allowed URL. A companion dataset describing the foliar pathogens (DOI 10.57745/UCEKI8) is also public. The pixel-annDataset · publicAn original dataset of 2,540 RGB images of oilseed rape leaves affected by
7 fungal and bacterial diseases (Table 1) was built to develop and evaluate
the proposed pipelines, and is made publicly available [25].Open asset ↗pdf-raw-page:5 lines:1-43Plant phenotyping relevance match · UnverifiedEurope PMC · checked 5 Sept 2026
Introduction Maize is one of the most important food crops in the world, and foliar diseases can lead to significant yield losses if identification is not performed on time. Experts conducting manual inspections find it less effective and more subjective. Deep learning-based approaches utilizing Convolutional Neural Networks (CNNs) and Vision Transformers (ViTs) have been demonstrated as a viable approach to automate disease diagnosis. Thus, while CNNs fail to capture wider context due to their local feature focus and ViTs need larger datasets and tend to miss finer-grained details. To overcome these limitations, we present EDISP a hybrid framework that connects Convolutional Neural Networks (CNNs) and Vision Transformers (ViTs) for local feature extraction, as well as global contextual learning. Methods The EDISP framework brings together the strengths of CNNs and ViTs to overcome their individual weaknesses. It is trained on a dataset that includes both controlled-environment and real-field maize leaf images, which helps it handle different environmental conditions. The data undergoes thorough preprocessing, including normalization, augmentation, and stratified splitting into training, validation, and test sets to support generalization. The CNN focuses on detailed local disease features, while the ViT captures broader contextual information across the maize leaf surfaces. Results The proposed EDISP model significantly outperforms standalone CNN and ViT Models in multiple performance metrics, achieving an overall classification accuracy of 99.40%, precision of 99.43%, recall of 99.38%, and an F1-score of 99.40%. Experimental results demonstrate that EDISP excels in identifying maize leaf diseases, including Common Rust, Gray Leaf Spot, Northern Leaf Blight, and Healthy leaves, with minimal false positives and negatives. External validation with an independent dataset further highlights the model's robustness and ability to generalize to real-world conditions. Discussion The EDISP hybrid architecture, integrating CNNs and ViTs, provides a stronger method for accurate, automated maize leaf disease detection. Its robust performance, consistent results on controlled and field datasets shows robustness in diverse environments. However, EDISP's effectiveness may be limited by image quality, lighting, or disease types not seen in training. These results highlight the promise of hybrid deep learning in precision agriculture and offer a scalable solution for disease detection, supporting farmers without expert diagnostic resources.
Why it matches plant phenotyping methodsトウモロコシ葉の病害状態を画像から検出・分類するCNN-ViT手法の開発と独立データセットによる検証が研究の中心であり、植物フェノタイピング手法に該当する。
abstractwe present EDISP a hybrid framework that connects Convolutional Neural Networks (CNNs) and Vision Transformers (ViTs) for local feature extraction, as well as global contextual learning.
Agricultural leaf disease detection is crucial for early intervention and yield protection in precision agriculture. Among representative economic crops, such as apples, leaf lesions are typically small and appear in complex backgrounds, making accurate detection performed on resource-constrained embedded devices challenging. To address this, we propose a lightweight small-object detection models, namely the dynamic Differential Compensation Lightweight-YOLO (DCL-YOLO) model and its pruned version (DCL-YOLO-P), based on YOLO11n. A novel Dual-Aspect Feature Complementary Mapping (DAFCM) module type is embedded in their backbone to recover lost semantic and spatial information, while the original YOLO11n's neck is replaced by an Efficient Enhanced Cross-Scale Feature Fusion (EE-CSFF) module, which incorporates Gated Differential Convolutional Fusion (GDCF) modules to strengthen cross-scale information flow and small-object representation. Experimental results obtained on the ALDSOD dataset show that, compared with the YOLO11n baseline, DCL-YOLO improves recall from 81.9% to 84.6%, mAP50 from 86.8% to 88.4%, and mAP50:95 from 47.0% to 47.8%, while also reducing the parameter count from 2.58 M to 1.91 M and Giga Floating-Point Operations (GFLOPs) from 6.3 to 5.5. After applying Layer-Adaptive Magnitude-based Pruning (LAMP), the parameter count and GFLOPs are further reduced to 0.75 M and 2.7, respectively, with mAP50 and mAP50:95 still exceeding the baseline by 1.2 and 0.5 percentage points, respectively. When deployed on an embedded device, the pruned model achieved 15.2 FPS and 139 msec per image, confirming its applicability in real-time scenarios. Furthermore, cross-domain validation, performed on the Global Wheat Head Detection (GWHD) dataset, indicates the stable generalization capabilities of the proposed models across environmental domain shifts. The DCL-YOLO's source code is publicly available at: https://github.com/q123-code/dcl-yolo.
Why it matches plant phenotyping methodsリンゴ葉の病斑を画像から検出する軽量モデルを開発し、データセットで性能比較・クロスドメイン検証・組込み機器での実装評価を行っており、植物の病害状態推定手法が研究の中心です。
abstractTo address this, we propose a lightweight small-object detection models, namely the dynamic Differential Compensation Lightweight-YOLO (DCL-YOLO) model and its pruned version (DCL-YOLO-P), based on YOLO11n.
Reproduction assets foundThe paper's constructed ALDSOD apple-leaf disease detection dataset is publicly available via Zenodo DOI, and the authors' DCL-YOLO source code is publicly available on GitHub. Both are paper-specific, public, and actionable.Dataset · publicData Availability: The constructed ALDSOD dataset used in this study is available for download from the following DOI: https://doi.org/10.5281/zenodo.17198053 .Open asset ↗zenodo · 10.5281/zenodo.17198053lines:148-159Code · publicThe DCL-YOLO’s source code is publicly available at: https://github.com/q123-code/dcl-yolo .Open asset ↗github · q123-code/dcl-yololines:148-159Plant phenotyping relevance match · UnverifiedEurope PMC · checked 15 Sept 2026
Published9 Jul 2026Spectrochimica acta. Part A, Molecular and biomolecular spectroscopyCited by 0 · OpenAlex ↗
Hyperspectral images contain richer spectral and spatial information than multispectral images, yet traditional equipment suffers from limitations such as bulky size and complex data processing. This study constructs a task-oriented near-infrared (NIR) hyperspectral reconstruction and detection framework for the precise detection of early apple bruises. First, apple samples were collected using a hyperspectral imaging system. The Weight Extremum Method was employed to screen seven characteristic wavelengths (976.4 nm, 1064.8 nm, 1175.8 nm, 1192.5 nm, 1295.4 nm, 1449 nm, and 1631.6 nm), which were further reduced to three key wavelengths (1064.8 nm, 1175.8 nm, and 1449 nm). Based on the datasets constructed from these bands, the HSGAN framework was used as the reconstruction backbone to reconstruct hyperspectral images ranging from 866 nm to 1701 nm. Results demonstrated that reconstruction performance was optimal with seven input bands (PSNR = 37.81, SSIM = 0.973) and remained favorable with three bands (PSNR = 34.70, SSIM = 0.950). Finally, YOLOv11n was used to detect bruises on both original and reconstructed images. Detection accuracy using reconstructed spectra from the 7-band input approached that of the original images (mAP50 = 0.994), while the 3-band input also maintained high precision (mAP50 = 0.992, Recall = 0.993). These results demonstrate that reconstructing 254 NIR bands from just three characteristic wavelengths is feasible. This framework significantly reduces data acquisition costs while enabling high-precision early bruise detection, offering a practical solution for agricultural quality control.
Why it matches plant phenotyping methodsリンゴ果実の打撲（植物器官の状態）を対象に、少数波長画像からNIRハイパースペクトル画像を再構成し、検出性能を評価する画像・計算フェノタイピング手法が研究の中心である。
abstractThis study constructs a task-oriented near-infrared (NIR) hyperspectral reconstruction and detection framework for the precise detection of early apple bruises.
Abstract Plant diseases affecting leaves and fruits cause substantial yield and economic losses worldwide, particularly in horticultural crops cultivated under diverse agro-climatic conditions. Early and accurate disease diagnosis is essential for effective crop management; however, manual inspection is time-consuming, subjective, and often infeasible at large scale. In this work, we present the Tomato–Chilli–Papaya (TCP) Fruit and Leaf Disease Dataset, a comprehensive multi-crop image dataset designed to support deep learning-based plant disease recognition. The dataset comprises labeled RGB images of healthy and diseased leaves and fruits from three economically important crops—tomato, chilli, and papaya—captured under real-field and semi-controlled environments, reflecting significant variability in illumination, background complexity, and disease severity. To demonstrate the applicability of the dataset, several commonly used convolutional neural network (CNN) architectures, including VGG, ResNet, DenseNet, MobileNet, and EfficientNet models, were trained and evaluated on the TCP dataset using transfer learning. Experimental results show that deep CNN models can effectively learn discriminative visual features corresponding to disease-specific patterns such as leaf spots, lesions, discoloration, curling, and fruit surface abnormalities. Lightweight models such as MobileNet achieve competitive performance with reduced computational cost, while deeper architectures provide improved accuracy at the expense of higher complexity. The results highlight the importance of dataset diversity for robust model generalization across multiple crops and plant organs. The TCP dataset provides a challenging benchmark for single-crop and multi-crop disease classification and supports the development of advanced deep learning, attention-based, and explainable AI models for precision agriculture. By enabling reproducible research and realistic performance evaluation, this dataset contributes toward scalable and practical AI-driven plant disease diagnosis systems aimed at reducing yield losses and supporting sustainable agriculture.
Why it matches plant phenotyping methods植物の葉・果実の病徴を画像から評価する大規模データセットとベンチマークを中心に扱っており、植物病害状態の画像ベース表現型解析に該当する。
abstractwe present the Tomato–Chilli–Papaya (TCP) Fruit and Leaf Disease Dataset, a comprehensive multi-crop image dataset designed to support deep learning-based plant disease recognition.
Reproduction assets foundThe paper introduces the TCP (Tomato-Chilli-Papaya) fruit and leaf disease image dataset and reports CNN experiments on it. The dataset is publicly deposited on Mendeley Data, and the authors state that analysis code is available on GitHub. Both are paper-specific, public, and actionable.Dataset · publicData is available on Mendeley:1Open asset ↗pdf-page:27 lines:1-51Code · publicCode availability: Code is available on GitHub 2Open asset ↗GitHubpdf-page:27 lines:1-51Plant phenotyping relevance match · UnverifiedEurope PMC · checked 15 Sept 2026
This study presents a large-scale framework for the digitalization of wheat mold odor based on controlled volatile release and standardized gas acquisition. Seven wheat-varieties harvested from 2022 to 2025 in three provinces of China were cultivated into four spoilage levels (normal, mild, moderate, and severe mildew), and a graphene-based sensor array was developed for multidimensional odor detection. A dual pre-treatment strategy integrating temperature-regulated volatilization and cooling-assisted dehumidification was implemented to ensure stable and comparable signal acquisition. Under optimized conditions, 1491 odor response curves from the first three batches were used for machine learning modeling, while an independent fourth batch (n = 503) was used for external validation. For binary classification (normal vs. moldy wheat), the optimized Light Gradient Boosting Machine achieved 95.8% accuracy, 95.5% sensitivity, 96.8% specificity, and an AUC of 0.984. This proposed approach enables rapid, non-destructive mold assessment and supports standardized grain quality monitoring.
Why it matches plant phenotyping methods小麦穀粒のカビ状態を対象に、グラフェンセンサーアレイと揮発成分取得前処理を開発し、機械学習分類と独立バッチ検証まで行っており、植物状態の取得・判定法が研究の中心である。
abstracta graphene-based sensor array was developed for multidimensional odor detection
Accurate lesion segmentation is essential for automated plant disease analysis in precision agriculture. Although the Segment Anything Model (SAM) exhibits strong generalization ability, its direct application to plant disease images in natural field environments remains challenging due to cluttered backgrounds, dense leaf veins, uneven illumination, and frequent occlusions. In particular, SAM mainly relies on global structural cues and is often insufficiently sensitive to subtle lesion textures and weak local details, which can result in missed small or early-stage lesions and inaccurate boundary delineation. To address these limitations, we enhance SAM with a disease-specific detail compensation module for plant disease lesion segmentation. A ResNet-50based branch is employed to extract fine-grained local texture features that are difficult for SAM to capture. These fine-grained features are fused with SAM encoder representations and then injected into the SAM decoder, enabling more accurate lesion prediction while preserving SAM’s strong global modeling capability. More importantly, we propose a reliability-guided variational fusion framework to further improve the interaction between heterogeneous features. Specifically, instead of conventional similarity or addition-based fusion, we introduce an uncertainty-aware variational fusion strategy that explicitly quantifies the confidence of each feature stream. An uncertainty encoder models feature distributions probabilistically, and a variational fusion module dynamically assigns higher weights to more reliable features while suppressing uncertain or interfering responses. In addition, Kullback-Leibler divergence regularization is introduced to stabilize cross-feature alignment and improve fusion robustness. Extensive experiments on PlantSeg, PlantDoc-Seg, and ATLDSD demonstrate that the proposed method outperforms state-of-theart approaches, achieving DSC scores of 81.05%, 91.12%, and 88.27%, respectively. The proposed method addresses SAM’s weakness in fine-grained disease feature extraction, accurately identifies early and small lesions, and delivers reliable segmentation for field plant disease automatic diagnosis.
Why it matches plant phenotyping methods植物病斑を対象とする画像セグメンテーション手法を開発し、複数データセットで性能検証しているため、病害状態のフェノタイピング手法が中心である。
abstractwe enhance SAM with a disease-specific detail compensation module for plant disease lesion segmentation.
Reproduction assets foundThe paper evaluates ReLeaf-SAM on three public plant disease segmentation datasets. One of them, PlantDoc-Seg, is explicitly a community-provided Kaggle dataset with a verbatim URL matching an allowed URL; it is a public plant image/mask dataset directly used for this paper's segmentation measurements. PlantSeg and ATLDataset · publicTherefore, we used a community-provided segmentation subset from Kaggle 1 , which we refer to as PlantDoc-Seg in this study. This subset is derived from PlantDoc and contains 588 diseased leaf images with corresponding binary masks, enabling supervised leaf disease segmentation.Open asset ↗Kagglelines:48-115Code / dataset availability confirmedEurope PMC · checked 5 Sept 2026
Agriculture is significant in world food production and global economic stability, but leaf disease and pest infection can cause a threat to crop quantity and quality. Thus, it became crucial to have timely and accurate identification of plant leaf disease to prevent loss in agriculture on a large scale and to have sustainable crop management. This paper introduces LeafLiteX, a lightweight mobile-based deep learning application for real-time detection and classification of leaf diseases. This application uses U-Net segmentation to precisely find leaf regions and MobileNetV3-Large to quickly classify diseases with less computation on the computer. The application performs end-to-end processing, from image acquisition to segmentation and disease prediction on mobile devices. An experiment was performed on publicly available crop disease datasets containing various leaf images having different disease types. The model obtained an accuracy of 98.85% showing improved generalization with minimal latency. The design of the model was such that it was suitable for inference on-device while still being robust enough despite changes in lighting conditions, background noise, and camera resolution. LeafLiteX is a low-cost, easy to use, offline-capable, and in-the-moment decision-making supportive diagnostic application that supports farmers and agrarians who require early detection. This paper demonstrates the capabilities that can be achieved using edge-optimized machine learning and computer vision to support the development of smart agriculture technologies. While traditional methods rely solely on classification, this research focuses more on practical implementation by incorporating segmentation, lightweight classification, and explainability to develop a mobile-friendly model.
Why it matches plant phenotyping methods葉画像から病害状態をセグメンテーション・分類する手法とモバイルアプリ自体が研究の中心であり、植物病害の表現型推定に該当する。
abstractThis paper introduces LeafLiteX, a lightweight mobile-based deep learning application for real-time detection and classification of leaf diseases.
Reproduction assets foundThe paper's Data availability statement explicitly links the public PlantVillage (Mendeley) and PlantDoc (GitHub) leaf-image datasets used for its experiments, and provides the authors' LeafLiteX source code on GitHub.Dataset · publicThe dataset used in this study is publicly available from the repository:
https://data.mendeley.com/datasets/tywbtsjrjv/1Open asset ↗data.mendeley.com · tywbtsjrjv/1pdf-page:29 lines:1-74Code · publicThe source code is available on the following link: https://github.com/phdpawan/LeafLiteX.Open asset ↗github.com/phdpawan/LeafLiteXpdf-page:29 lines:1-74Plant phenotyping relevance match · UnverifiedOpenAlex · Europe PMC · Crossref · checked 5 Sept 2026
(L.) Merrill) is a highly important crop widely used for food, edible oil, animal feed, and microbial fermentation products. Traditional phenotypic measurement methods are often time-consuming, labor-intensive, destructive to plants, and prone to human error. High-Throughput Phenotyping (HTP) enables precise assessment of multiple soybean phenotypic features, including morphology, physiology, diseases, pests, and agronomic traits. Artificial Intelligence (AI) is a research field dedicated to developing algorithms for multiple tasks. This review highlights the application of HTP and AI in soybean breeding programs. We discuss the challenges of implementing HTP in soybean breeding and focus on the potential and limitations of Deep Learning (DL) to support soybean breeding goals. We demonstrate the application of HTP to key soybean traits, several HTP platforms, as well as DL applications across different datasets and strategies for developing large foundation models. While integrating AI into soybean breeding programs remains a challenge, leveraging HTP data and Large Language Models (LLMs) could reshape soybean breeding.
Why it matches plant phenotyping methods大豆育種におけるHTPとAIの応用、形質評価、プラットフォーム、データセットおよび深層学習を中心に扱うフェノタイピング手法レビューであり、方法論が中心的です。
abstractThis review highlights the application of HTP and AI in soybean breeding programs.
The segmentation model achieved Mean IoU values of 0.7723 for Water Stress 2025, 0.9164 for Common Rust 2025, and 0.9531 on the benchmark dataset. The classifier achieved 99.54% accuracy for the five-class task; however, the improvement over the strongest baselines and the RGB + multispectral configuration was limited. Therefore, the classification component is not presented as a substantially superior classification-only model. Instead, it is interpreted as an exploratory multimodal analysis that quantifies the contribution and limitation of RGB, multispectral, Wavelet, and GLCM branches under the adopted UAV dataset protocol. For classification-only deployment, simpler alternatives such as DenseNet201 or the RGB + multispectral configuration may be more practical because they provide comparable accuracy with lower architectural or preprocessing complexity. Ablation, modality-controlled, and 21-run stability experiments showed reproducible segmentation results and clarified the behavior of the classification branches. RGB and multispectral branches mainly provided the peak classification accuracy, whereas Wavelet and GLCM branches mainly affected offline convergence rather than final accuracy. RGB, NDVI, and NDRE visualizations were also added for qualitative support. Since direct physiological ground measurements were not available for all samples, the masks are interpreted as adaptive index-guided labels rather than direct physiological ground truth. Overall, the main evidence of practical benefit is associated with UAV-based dataset construction, adaptive index-guided segmentation, and field-scale stress/disease mapping, while the classification experiments should be interpreted as modality-contribution and convergence analyses rather than proof of a practically superior complex classifier.
Why it matches plant phenotyping methodsUAVマルチスペクトル画像によるトウモロコシの水ストレス・病害状態のセグメンテーション、データセット構築、再現性評価が研究の中心であり、植物表現型の取得・抽出手法として実質的です。
abstractOverall, the main evidence of practical benefit is associated with UAV-based dataset construction, adaptive index-guided segmentation, and field-scale stress/disease mapping
Introduction Wheat is one of the most widely planted staple crops worldwide and underpins global food security. Fungal diseases severely threaten wheat growth and trigger massive yield losses during cultivation. Traditional manual diagnosis is time-consuming and highly subjective, while existing deep learning models often struggle to achieve high accuracy and robustness in complex field environments. Accurate identification of these fungal diseases is therefore vital to secure grain production. Methods This paper constructs a lightweight convolutional neural network named ShuffleNetV2_SSM_MLCA for wheat fungal disease classification. First, the original basic blocks of ShuffleNetV2 are substituted with SS-Conv-SSM modules to strengthen the extraction of fine-grained lesion features amid visually analogous fungal disease samples; half convolution is embedded to cut down model computational overhead. Second, a Mixed Local Channel Attention (MLCA) unit is attached to the convolution branch of each SS-Conv-SSM module, which adaptively highlights discriminative disease features and filters irrelevant background noise. Standard training configurations and five-fold cross-validation are adopted for fair model evaluation. Results Comparative experiments reveal that the presented network reaches a classification accuracy of 91.35%, which surpasses the original ShuffleNetV2 baseline by 1.16 percentage points. Controlled ablation tests verify the independent performance gain of each core component: the SS-Conv-SSM module raises overall accuracy by 0.89%, and the MLCA mechanism brings an extra 0.27% accuracy increment. Discussion The proposed ShuffleNetV2_SSM_MLCA architecture strikes a favorable trade-off between model lightweight property and classification performance. It delivers a low-computation, high-precision recognition scheme for wheat fungal diseases and lays a solid technical foundation for real-time disease monitoring in intelligent agricultural scenarios.
Why it matches plant phenotyping methods小麦葉片の病斑特徴を画像から抽出し、植物の真菌病状態を分類する軽量深層学習手法を開発・検証しており、病害表現型の取得・推定が研究の中心である。
abstractThis paper constructs a lightweight convolutional neural network named ShuffleNetV2_SSM_MLCA for wheat fungal disease classification.
Reproduction assets foundThe paper's plant-image measurements are based entirely on publicly available wheat disease image datasets: a primary Kaggle dataset (Wheat Plant Diseases by Kushagra Agarwal) used for model development, and two additional public datasets (Alibaba Cloud Developer Community and CSDN Modelers) used for generalization andDataset · publicThe dataset is publicly available at https://www.kaggle.com/datasets/kushagra3204/wheat-plant-diseases and was accessed on September 5, 2025.Open asset ↗Kaggle · kushagra3204/wheat-plant-diseaseslines:322-374Dataset · publicThe second dataset was contributed by blogger DL data set and released on December 25, 2025 via the CSDN Modelers platform ( https://modelers.csdn.net/69a67f4c7bbde9200b9c3240.html )Open asset ↗CSDN Modelerslines:644-669Plant phenotyping relevance match · UnverifiedEurope PMC · Crossref · checked 5 Sept 2026
Potato leaf diseases directly reduce yield and quality, and accurate field detection is important for precision plant protection. However, potato disease lesions are often weak in deep semantic representation, easily disturbed by complex field backgrounds, and variable in multi-scale lesion texture. To address these challenges, this study proposes an improved YOLO-based potato leaf disease detection model. The proposed model enhances the detector through three task-oriented modules. Deep Symptom Enhancement is used to strengthen deep disease feature extraction. Lesion Selection Attention based on large separable kernel attention improves the spatial selection of lesion regions. Multi-Scale Refinement Adapter uses a Mona-based C2PSA structure with two stacked Mona adapters to refine multi-scale texture and lesion-boundary information. Experiments were conducted on a potato leaf disease image dataset using mAP50, average recall (AR), parameters, GFLOPs, and FPS as evaluation metrics. The baseline YOLO26s achieved 81.31% mAP50 and 77.85% AR. The proposed SLR-YOLO model achieved 88.92% mAP50 and 83.51% AR, improving mAP50 and AR by 7.61 and 5.66 percentage points, respectively, while maintaining 118.6 FPS. The results show that the proposed framework improves detection accuracy for potato leaf disease images while retaining practical real-time performance.
Why it matches plant phenotyping methodsジャガイモ葉の病斑・病害状態を画像から推定するYOLOベース手法を開発し、データセット上で精度とリアルタイム性能を評価しており、植物表現型取得手法が中心である。
abstractthis study proposes an improved YOLO-based potato leaf disease detection model
Abstract One of the most important challenges faced by smallholder farmers in the agricultural industry is the lack of accurate, timely knowledge to predict and detect crop health issues. Crop productivity is often threatened not only by diseases but also by environmental and physiological stresses, which contribute to significant yield losses and negatively impact the national economy. Traditional detection methods are time-consuming, costly, and require expert knowledge, creating a need for automated and intelligent systems. This work proposes a dual-functional framework that combines crop disease and stress detection using advanced machine learning and deep learning techniques to accurately classify healthy and diseased leaves. This integrated system ensures early detection, reduces crop loss, improves productivity, and provides a scalable, farmer-friendly solution for sustainable agriculture.
Why it matches plant phenotyping methods葉画像から健康・病害状態を機械学習で分類する手法が研究の中心であり、植物の病害・ストレス状態を直接推定するため、植物フェノタイピング手法として採用。
abstractThis work proposes a dual-functional framework that combines crop disease and stress detection using advanced machine learning and deep learning techniques to accurately classify healthy and diseased leaves.
Grapevines are economically vital crops but are highly susceptible to fungal, bacterial, and viral diseases that threaten yield and quality. Traditional detection methods rely on manual inspection, are time-consuming, prone to human error, and often delay intervention. This study introduces a lightweight convolutional neural network (CNN) architecture specifically designed for accurately and efficiently detecting grapevine leaf diseases—including Black Rot, ESCA, and Leaf Blight—based on image classification. The proposed model integrates optimized residual blocks, batch normalization, dropout layers, and global average pooling to maximize accuracy while minimizing computational complexity. This lightweight design makes it well-suited for deployment on edge devices such as drones and mobile systems used in precision agriculture. A comprehensive data augmentation strategy was applied during training to simulate real-world variability and enhance generalization. The model was trained using 9,027 labeled grape leaf images from a publicly available grape disease image dataset, and it achieved 99.8% overall accuracy with near perfict precision, recall, F1-score, and area under the ROC curve (AUC) across all classes. These findings highlight the practical potential or real-time, scalable and sustainable disease monitoring in smart vineyard management systems.
Why it matches plant phenotyping methodsブドウ葉の病害状態を画像から分類するCNN手法を開発・評価しており、植物病害表現型の取得・推定が研究の中心です。
abstractThis study introduces a lightweight convolutional neural network (CNN) architecture specifically designed for accurately and efficiently detecting grapevine leaf diseases—including Black Rot, ESCA, and Leaf Blight—based on image classification.
This study aims to improve the performance of the Convolutional Neural Network (CNN) algorithm in detecting coffee leaf diseases using the Inception V3 architecture. The main challenge of this classification is the subtle visual similarity in color, texture, and symptom patterns between diseases. To overcome this, Inception V3 is implemented because of its superiority in multi-scale feature extraction through convolution factorization which reduces parameters while increasing accuracy. The dataset used consists of 1,120 images, evenly distributed into four classes (three types of diseases and one healthy class, each with 280 images), with a training, validation, and test data split ratio of 896:112:112. As a comparison, a conventional basic CNN architecture consisting of 3 convolution layers (3 X 3, stride 1), 3 max-pooling, and 1 dense layer, trained with the same hyperparameters (Adam optimizer, learning rate 0.001, batch size 32) is used. The experimental results show a significant performance improvement; Model accuracy increased from 74.4% on a standard CNN to 97.0% after integrating Inception V3. The scientific contribution of this research lies in mapping overlapping visual characteristics of coffee diseases through multi-scale feature optimization, which demonstrates that computational efficiency can go hand in hand with accuracy improvements on complex agricultural image datasets. These findings confirm that the Inception V3 architecture provides a robust and efficient solution for automating plant disease diagnosis in the field.
Why it matches plant phenotyping methodsコーヒー葉の病徴を画像から分類するCNN手法の改善・比較が研究の中心であり、植物病害状態の画像ベース表現型推定に該当する。
abstractThis study aims to improve the performance of the Convolutional Neural Network (CNN) algorithm in detecting coffee leaf diseases using the Inception V3 architecture.
Plants can suffer a number of diseases that impact agricultural productivity and food security, particularly in developing farming communities. Although deep learning is capable of classification of diseases with outstanding results, its use is limited due to the difficulty of obtaining large labeled databases and the high requirement of computation. To address these challenges, this study proposes a new method for plant disease classification based on traditional image processing and machine learning algorithms with lightweight and low computation requirements. This one uses several handcrafted descriptors such as color histograms, Haralick texture features and Hu moments to retrieve the information relevant to a disease from the segmented leaf images. Performance of top five classifiers, namely Random Forest, Support Vector Machine, K-Nearest Neighbors, Logistic Regression and Naïve Bayes classifiers are evaluated from the dataset of healthy plant leaves and diseased plant leaves images on 10-fold cross validation. Based on the results of the research work, the best classification model was the Random Forest Classifier model with the accuracy value is 98.12%, 0.98 precision, 0.98 recall, and 0.98 F1 value. The proposed solution was also found to be uncomputation complex and low memory consuming and can be made realtime inference. Therefore, this solution can be implemented onto agricultural systems, considering edge computing and IoT. The results of the research also demonstrated that feature-based machine learning approaches afford interpretable and reliable plant disease detection at a low computation cost, further contributing to sustainable, and precision agriculture.
Why it matches plant phenotyping methods葉画像から病徴を抽出・分類する画像処理および機械学習手法が研究の中心であり、植物の病害状態を直接推定するため、植物フェノタイピング手法として含める。
abstractthis study proposes a new method for plant disease classification based on traditional image processing and machine learning algorithms
Mango (Mangifera indica L.) is among the most important commercial fruits grown throughout the world in the tropical and subtropical areas. Even though mangoes are economically important, their cultivation is continuously threatened by a wide variety of leaf and fungi diseases, resulting in crop losses of up to 15-30% annually. [1]. Conventional disease identification depends heavily on expert visual inspection—a process that is inherently slow, subjective, and largely impractical for smallholder farmers operating in remote areas with limited access to agronomic specialists. This paper provides an end-to-end deep learning-based approach towards automatic mango leaf disease detection along with an Android application for real-time deployment in the field. This work is built upon MangoLeafBD [1], an openly accessible dataset that consists of a total of 4,000 images of RGB color space for seven different disease categories and one healthy class, with each category having 500 samples collected from four separate orchards in Bangladesh. Three types of transfer learning models including VGG16 [2], MobileNetV2 [3], and DenseNet121 [4] were considered after applying two-phase fine-tuning based on pre-trained ImageNet weights. For each of the three types of neural network models tested, a series of preprocessing steps consisting of bilinear resizing to size 224 x 224, channel-wise normalization, and image augmentation (rotation, zoom, brightness adjustment, horizontal flip, and shear) was used to increase model accuracy for diverse real-world images. The training model was deployed using TensorFlow Lite (TFLite), which allowed it to be run in offline mode on mid-end Android phones, without needing internet connectivity. The app lets farmers upload leaf images or take images and get a diagnosis of the leaf diseases, along with possible treatments for them.This work contributes a replicable pipeline linking state-of-the-art deep learning research with practical precision agriculture, particularly for rural communities that currently lack access to timely agronomic advisory services.
Why it matches plant phenotyping methodsマンゴー葉画像から病害状態を推定する深層学習パイプラインとモバイル実装が研究の中心であり、植物病害フェノタイピング手法に該当する。
abstractThis paper provides an end-to-end deep learning-based approach towards automatic mango leaf disease detection along with an Android application for real-time deployment in the field.
Accurate detection of plant leaf diseases is essential for enhancing crop productivity and supporting global food security. In addition to disease classification, understanding how environmental and soil conditions affect model performance is important for developing robust real-world agricultural monitoring systems. Although deep learning (DL) models achieve high accuracy on benchmark datasets, their performance in real-world settings is often limited by variations in illumination, background complexity, and environmental conditions. This study proposes a smart DL framework for detecting and classifying multiple leaf diseases in tomato, potato, and pepper plants. The framework combines U2-Net-based leaf segmentation with a Convolutional Neural Network–Bidirectional Gated Recurrent Unit (CNN–Bi-GRU) architecture. MobileNetV2 is employed as the feature extraction backbone to capture spatial characteristics, while Bi-GRU layers model sequential feature dependencies, forming a spatio-temporal network whose architectural design prioritizes parameter efficiency through depthwise separable convolutions and reduced gating complexity. The model was trained and validated using the PlantVillage benchmark dataset and achieved a classification accuracy of 99.8% with a macro-averaged F1-score of 94%, outperforming several state-of-the-art architectures. To assess robustness under real-world conditions, the trained model was further tested on leaf images collected from open-field environments near Eluru, South India. The field evaluation revealed a reduction in classification accuracy to 61.97%, indicating the impact of domain shift and environmental variability. To investigate potential contributing factors, soil parameters, including pH, temperature, moisture, and NPK levels, were monitored using an IoT-based Arduino sensing system over ten consecutive days. Rather than serving as direct inputs to the disease classification model, these environmental measurements were analyzed to assess their potential influence on disease symptom expression and the observed reduction in model performance under field conditions. The results suggest that environmental conditions may influence disease symptom expression and model transferability. This study highlights the importance of integrating DL-based disease recognition with environmental monitoring for reliable field-level agricultural applications. Nevertheless, computational complexity metrics, including inference latency and memory footprint, were not evaluated in the present work and are identified as a priority for future edge deployment studies.
Why it matches plant phenotyping methods植物葉の病徴を画像から分類するセグメンテーション・深層学習手法を開発し、ベンチマークと圃場画像で性能を検証しているため、植物フェノタイピング手法が中心である。
abstractThis study proposes a smart DL framework for detecting and classifying multiple leaf diseases in tomato, potato, and pepper plants.
Plant varieties are essential for the survival of human beings and animals, as they act as an alternative source of food, fiber, fodder, and other raw materials for domestic needs and industries in any society. Early identification of plant leaf diseases is very important for keeping the health of crops intact. Crops being infected can affect the overall yield of crops, which may be detrimental to the earnings of farmers. With the emergence of artificial intelligence technology, it has become possible to deploy systems for quicker identification of illnesses. This work has been carried out for the prediction of plant diseases based on visual phenotypic manifestations, such as images of leaves. For this purpose, the dataset has been created after retrieving data from the PlantVillage dataset. The clinical reliability of different deep learning models of various representational capacities has been tested while using ImageNet pre-trained parameters. The experimental results show that MobileNetV2 achieves the highest accuracy of 96.15%, outperforming deep CNN (76.92%) and medium CNN (61.54%). The test accuracy and class-wise F1-scores for the CNN are observed to be substantially very high. The generalization ability and result of DCNN and MCNN are moderate and poor, respectively, as observed. Additionally, the proposed CNN only uses the disease-affected areas on the leaf, thus making the result more interpretable
Why it matches plant phenotyping methods葉の画像から病徴を推定する深層学習手法を開発・比較し、モデル性能と解釈性を評価しているため、植物表現型取得が中心である。
abstractThis work has been carried out for the prediction of plant diseases based on visual phenotypic manifestations, such as images of leaves.
Cotton leaf diseases present a major threat to global cotton production, significantly impacting both yield and fiber quality. Traditional diagnostic methods are labor-intensive, time-consuming, and demand highly skilled professionals, making them inefficient for large-scale agricultural applications. Although earlier deep learning -based approaches have shown promising results in identifying cotton leaf diseases such as Bacterial Blight, Fusarium Wilt, and Curl Virus Disease, their performance is often limited by complex preprocessing requirements and insufficient generalization to real-world field conditions. To address these challenges, this study proposes and optimized transfer learning-based model, CLDP-CNN, designed to enhance feature extraction and classification efficiency using pre-trained deep neural networks. This study demonstrates the development of Cotton Leaf Disease Prediction Convolutional Neural Network (CLDP-CNN) automatically, utilizing Transfer Learning (TL) which operates on meticulously prepared datasets. Two distinct datasets were used to train the model: the first consisted of field images from cotton farms, while the second was sourced from Kaggle. The main goal of this research examines how the model performs on real-world field datasets. The CLDP-CNN model has proven highly accurate by attaining 99.78% detection success rates for cotton leaf diseases when processing primary dataset which surpasses its secondary dataset accuracy rate of 99.62%. Both the primary dataset and secondary dataset resulted in high accuracy values for the VGG16 pre-trained model which achieved 99.56% accuracy on the primary dataset and 98.82% on the secondary dataset. A web-based application enhances the capabilities of the CLDP-CNN model by providing real-time updates on the health status of cotton plants. This technology empowers farmers with valuable information, enabling them to take timely protective actions to prevent potential severe yield losses in their cotton crops.
Why it matches plant phenotyping methods綿花葉の画像から病害状態を推定する深層学習モデルを開発・評価しており、植物フェノタイピング手法が研究の中心です。
abstractThe main goal of this research examines how the model performs on real-world field datasets.
Reproduction assets foundThe paper's cotton leaf disease image datasets are publicly available: the authors' primary field-collected dataset on the first author's GitHub repository, and the secondary Kaggle dataset used for comparison. No analysis code or trained model checkpoints are explicitly deposited.Dataset · publicbia.
Funding: This work was supported by Princess Nourah bint Abdulrahman
University Researchers Supporting Project number (PNURSP2026R760),
Princess Nourah bint Abdulrahman University, Riyadh, Saudi Arabia.
Data and code availability
The data that support the findings of this study are openly available in Github and
Kaggle at. https://github.com/mnaeem303/Cotton-Leaf_Disease-Dataset),
and https://www.kaggle.com/datasets/seroshkarim/cotton-leaf-disease-dataset/data
Author Contributions
All the authors (Muhammad Naeem, Muhammad Ibrahim, Nadeem Sarwar, Oumaima
Saidani, Asma Irshad, Muhammad Shadab Alam Hashmi, Muhammad Tayyab
Qammar) contributed equally to this work in their respective meaningOpen asset ↗https://github.com/mnaeem303/Cotton-Leaf_Disease-Datasetpdf-raw-page:29 lines:1-54Dataset · publicbdulrahman
University Researchers Supporting Project number (PNURSP2026R760),
Princess Nourah bint Abdulrahman University, Riyadh, Saudi Arabia.
Data and code availability
The data that support the findings of this study are openly available in Github and
Kaggle at. https://github.com/mnaeem303/Cotton-Leaf_Disease-Dataset),
and https://www.kaggle.com/datasets/seroshkarim/cotton-leaf-disease-dataset/data
Author Contributions
All the authors (Muhammad Naeem, Muhammad Ibrahim, Nadeem Sarwar, Oumaima
Saidani, Asma Irshad, Muhammad Shadab Alam Hashmi, Muhammad Tayyab
Qammar) contributed equally to this work in their respective meaningful ways. All the
authors have read and approved the final manuOpen asset ↗pdf-raw-page:29 lines:1-54Plant phenotyping relevance match · UnverifiedCrossref · Europe PMC · checked 15 Sept 2026
Abstract This study pioneers a surface-enhanced Raman spectroscopy (SERS) analyzer leveraging engineered Au core/Ag shell nanocubes (Au@AgNCs) to bridge in planta pathogen tracking with airborne defense signal monitoring, enabling unprecedented decoding of plant–plant communication (PPC) kinetics. Within a Pseudomonas aeruginosa (P. aeruginosa)-infected plant biotic stress model, the analyzer achieved: (1) spatiotemporal mapping of virulence kinetics through sensitive detection of P. aeruginosa-specific virulence factor pyocyanin, establishing infection progression timelines and tissue-specific dissemination gradients. (2) Quantification of stress-responsive signaling via dual-functionalized Au@AgNCs, revealing methyl salicylate (MeSA) release kinetics and establishing a direct correlation between pathogen invasion severity and airborne alarm signal—a calibrated defense response heretofore unquantified. (3) Real-time in situ monitoring of MeSA-mediated PPC revealed fundamental plant physiological breakthroughs: First, receiver-specific signaling reprogramming occurs where healthy plants exhibit delayed yet amplified defense hormone kinetics, contrasting sharply with the immediate response of infected emitters. Second, evolutionarily constrained coordination emerges through cross-species signaling divergence, where phylogenetic adaptations in phytohormone perception circuits drive distinct defense strategies−exemplified by Solanaceae amplification versus Poaceae suppression. (4) Validation of systemic acquired resistance (SAR) in PPC-primed plants showing 63.5% reduced infection severity and two days delayed susceptibility. This analyzer integrates molecular-scale pathogen kinetics with ecosystem-level signaling networks, advancing precision agriculture through field-deployable plant immunity diagnostics.
Why it matches plant phenotyping methodsSERSセンサーアナライザーの開発・検証が研究の中心で、植物感染進行、ストレス応答、空中防御シグナル、感染重症度を時空間的に測定するため、植物フェノタイピング手法に該当する。
abstractThis study pioneers a surface-enhanced Raman spectroscopy (SERS) analyzer
Disease progress curves (DPCs) are central to evaluating disease management strategies, including host plant resistance. Although widely used and often appropriate, scalar summaries such as the area under the disease progress curve (AUDPC) may obscure meaningful differences in epidemic timing and trajectory shape. Here, I introduce a curve-based framework for comparing plant disease epidemics that treats DPCs as epidemic phenotypes, enabling trajectory-based comparisons beyond conventional scalar summaries. Using a hierarchical generalized additive model, environment-adjusted mean epidemic curves were estimated for each treatment (corn hybrid) while accounting for repeated assessments and environmental heterogeneity. Similarity among hybrids was quantified using a functional distance defined over the epidemic time domain, and hierarchical clustering was used to identify epidemic phenotypes based on differences in curve shape. Applied to multi-environment field data (6 environments; 74 DPCs) for southern corn leaf blight in 13 hybrids, this approach identified distinct epidemic phenotypes that were not fully reflected by AUDPC-based comparisons, despite similar overall disease levels. In addition, a distance-based permutation test indicated that breeder-defined resistance classes (moderately resistant versus resistant), established independently of the curve analysis, were associated with systematic differences in epidemic trajectory shape across environments. By shifting emphasis from scalar summaries to curve-based epidemic representations, this framework provides a complementary tool for host resistance phenotyping and comparative epidemiology and establishes a foundation for hierarchical synthesis and trajectory-based inference across environments.
Why it matches plant phenotyping methods植物病害進展曲線を植物病害表現型として解析する統計的・計算的フレームワークを開発し、複数環境・ハイブリッドで適用しているため、方法が研究の中心である。
abstractHere, I introduce a curve-based framework for comparing plant disease epidemics that treats DPCs as epidemic phenotypes, enabling trajectory-based comparisons beyond conventional scalar summaries.
The acquisition of labelled data for new or emerging plant diseases is difficult due to the high cost and logistical complexity of ground-truth collection, challenges that are further compounded by the limited infrastructure available to smallholder farmers in sub-Saharan Africa. This study presents FewShotCropNet, a few-shot learning model based on Spectral-Temporal Attention Mechanisms and Prototypical Networks that utilises multispectral time-series data from Sentinel-2 to classify crop diseases. Two principal innovations are incorporated in the proposed model: (1) a spectral attention mechanism based on the Squeeze-and-Excitation approach to learn disease-relevant spectral band weights; and (2) a temporal attention pooling mechanism to identify the most discriminative growth stages for disease classification. The model employs a two-phase training strategy comprising supervised pre-training followed by episodic meta-learning, enabling the generation of optimal feature representations under extreme label scarcity. Crop disease detection experiments were conducted in Edo State, Nigeria on cassava and maize using monthly Sentinel-2 composites from 2024 (10 spectral bands and five vegetation indices across twelve temporal steps). Under a 4-way 5-shot classification scenario with 100 GPS-validated labelled samples (25 per-class), FewShotCropNet achieved a mean accuracy of 98.15% with a 95% confidence interval of ±0.58%. An equitable comparison was enabled by introducing a Pre-trained Simple Prototypical Network, a variant sharing the same two-phase training strategy as FewShotCropNet but without the attention modules—which achieved 97.75% (±0.63%). FewShotCropNet exceeded the Pre-trained Simple ProtoNet by +0.40 percentage points (t = 1.52, p = 0.13), with the attention module contribution verified as positive though not statistically significant on the current dataset. Statistically significant improvements over models trained without pre-training were observed: FewShotCropNet outperformed the Relation Network (94.40%), Matching Network (94.40%), and the Optimised Baseline Convolutional neural networks (CNN) (86.65%, pre-trained backbone with 5-shot linear probe), with p
Why it matches plant phenotyping methods植物病害状態を対象に、Sentinel-2時系列データから病害を分類するFewShotCropNetを開発し、比較評価しているため、病害フェノタイピング手法が中心である。
abstractThis study presents FewShotCropNet, a few-shot learning model based on Spectral-Temporal Attention Mechanisms and Prototypical Networks that utilises multispectral time-series data from Sentinel-2 to classify crop diseases.
Food productivity, quantity and quality are at stake when plant diseases such as rice diseases undermine the food security. Rice leaf disease treatment necessitates accurate and timely diagnosing. This study describes a deep learning model for categorizing and forecasting rice plant diseases. Using the remora optimization algorithm (ROA) on a rice leaf dataset demonstrates its potential for plant disease classification. The ROA-DM method detects rice leaf diseases using the ROA algorithm, a deep maxout network (DMN), and a deep autoencoder (DAE). ROA is applied to the learning parameters of deep model in order to achieve better convergence and avoiding local minima, which usually happens with conventional gradient-based optimizers. Experiments show that the suggested framework is accurate and precise across illness categories. The confusion matrices display the training and validation accuracy, losses of this model. The performance of our optimal learning method with respect to other methods indicated its potential for identifying leaf diseases. The accuracy of the ROA-DM method is 98.5%.
Why it matches plant phenotyping methodsイネ葉の観察画像から病害状態を分類・検出する深層学習手法が研究の中心であり、植物病害フェノタイピング手法に該当する。
abstractThis study describes a deep learning model for categorizing and forecasting rice plant diseases.
Reproduction assets found保存済みの本文根拠を更新済みルールで再検証し、公開資産1件を確認しました。Dataset · publicThe dataset collected from https://www.kaggle.com/datasets/emmarex/plantdisease (PlantVillage dataset) for algorithm testing in plant disease diagnosis 35 . The selected rice leaf disease samples from PlantVillage dataset consisting of 3050 colour leaf images across four classes.Open asset ↗Kaggle · emmarex/plantdiseaselines:85-97Plant phenotyping relevance match · UnverifiedEurope PMC · checked 5 Sept 2026
Field / plotObject detectionStress / disease detectionDisease symptoms / severity
Introduction To address the challenges of low detection precision, severe background interference, and high model complexity in tiny crop disease lesion detection (defined as lesions occupying 8×8 to 32×32 pixels at 640×640 input resolution) under complex field environments, this study proposes a lightweight detection model named FDA-YOLO by integrating frequency-domain attention and improved YOLOv11. Methods The model employs EfficientFormerV2 as the backbone to extract multi-scale features with low computational cost, and introduces a frequency domain attention module to enhance high-frequency tiny disease lesion details and suppress background noise. Results Comprehensive experiments on the PlantDoc dataset demonstrate that the proposed model achieves 96.3% mAP@0.5, 96.8% precision, and 36.4 FPS with only 28.5M parameters, outperforming the selected baseline detectors under the adopted experimental setting. Discussion The model realizes an optimal balance between accuracy, efficiency, and lightweight performance, providing a reliable and practical solution for real-time tiny lesion detection inprecision agriculture and edge device deployment.
Why it matches plant phenotyping methods植物病斑という植物の病態を画像から検出するモデルを開発し、PlantDocデータセットで精度・速度・計算量を比較検証しているため、植物フェノタイピング手法が中心である。
abstractthis study proposes a lightweight detection model named FDA-YOLO
Plant phenotyping relevance match · UnverifiedCrossref · Europe PMC · checked 15 Sept 2026
Introduction Accurate and rapid diagnosis of plant leaf disease symptoms is critical for sustainable agricultural crop production, yet traditional methods often lack efficiency and robustness under field conditions. Methods Here, we propose a deep learning framework based on an improved Vision Transformer architecture that integrates a dynamic sparse attention mechanism, termed KBTNet, for targeted feature extraction in symptom-affected regions of leaf images. The model incorporates a learnable nonlinear enhancement module to capture subtle visual disease symptom variations such as lesions, discoloration patterns, and spot distributions, and a lightweight Transformer design to reduce computational cost. Results Evaluated on a multisource dataset containing soybean and tomato leaf images representing diverse disease symptom patterns, our approach achieved 93.19% classification accuracy, outperforming current state-of-the-art models. Additional evaluations on public plant disease datasets from multiple crops further demonstrate the model's ability to recognize disease symptom patterns across diverse crop species. Discussion The proposed framework achieves stable performance across diverse crop and disease symptom categories, maintains high efficiency under reduced parameter complexity, and exhibits strong potential for realtime field diagnostics on edge devices. This work provides a scalable and efficient tool for plant disease symptom detection and classification and supports the integration of visionbased intelligence into crop disease monitoring and management systems.
Why it matches plant phenotyping methods植物葉画像から病徴（病斑、変色、斑点分布）を抽出・分類する深層学習手法を開発しており、植物病害状態の表現型取得が研究の中心である。
abstractwe propose a deep learning framework based on an improved Vision Transformer architecture that integrates a dynamic sparse attention mechanism, termed KBTNet, for targeted feature extraction in symptom-affected regions of leaf images.
Brinjal (eggplant) is a critical crop in South Asia, especially in Bangladesh, but its production is drastically affected by numerous diseases that inhibit yield and quality. Manual diagnosis of disease is time-consuming, subjective, and prone to errors, necessitating automated, scalable technology. To address these issues, this paper proposes PD-ViCo, a lightweight, efficient transformer-based model for brinjal fruit disease classification using Simple Vision Transformer (ViT) with Patch Dropout and Contrastive Captioner (CoCa) methods. One new dataset of 1,823 field-harvested brinjal images encompassing five disease classes including Phomopsis Blight, Fruit and Shoot Borer, Fruit Cracking, Wet Rot, and Healthy samples were prepared through real-world agricultural data collection from Bangladesh. The approach includes extensive preprocessing, class balancing (under-sampling/oversampling), and resilient augmentation methods. The PD-ViCo model significantly improves classification performance under data imbalance with patch dropout regularization and CoCa-style aggregation, resulting in better generalization and robustness. On a range of imbalanced, under-sampled, and oversampled datasets, PD-ViCo achieved a classification accuracy of 99.12% and F1-score of 97.76%, outperforming both ViT and Swin Transformer across all key evaluation metrics. Explainability was also applied using Grad-CAM and Grad-CAM + + , generating visual explanations of model decisions and maintaining conformity to disease-affected regions in the images. These visualizations ensure the credibility of the model and its usability for real agricultural conditions. This study demonstrates that PD-ViCo is a highly accurate, interpretable, and lightweight model for multi-class brinjal disease diagnosis. Not only does it advance state-of-the-art in agricultural AI, but it also provides a valuable dataset and an understandable decision-making protocol that can be applied directly by farmers, agronomists, and agricultural technologists.
Why it matches plant phenotyping methods植物画像から病害状態を分類するモデル、データセット、説明可能性評価を中心に開発・検証しており、植物フェノタイピング手法として適格。
abstractthis paper proposes PD-ViCo, a lightweight, efficient transformer-based model for brinjal fruit disease classification
Reproduction assets foundThe paper's own field-harvested brinjal disease image dataset (1,823 images, five classes) is publicly deposited on Mendeley Data, with an explicit availability statement and URL matching an allowed entry. No code or model checkpoint deposit is stated.Dataset · publicThe data utilized in this study is publicly accessible on Mendeley Data Repository at the following link: [ https://data.mendeley.com/datasets/ngc58fsxgd/1 ].Open asset ↗Mendeley Data · ngc58fsxgd/1lines:226-251Plant phenotyping relevance match · UnverifiedCrossref · checked 15 Sept 2026
Rice is the staple food for more than half of the global population. However, the productivity and quality of rice or grain dropped significantly due to leaf diseases. These diseases are difficult to identify through manual processes, which are time-consuming, labour-intensive and often inaccurate, particularly in rural farming communities. With recent advances in computer vision technology, object detection algorithms, namely the you only look once (YOLO) family, can provide high-speed, high-accuracy solutions for automated plant disease detection. This study evaluates four YOLO variants, such as YOLOv5, YOLOv7, YOLOv8 and YOLOv11, using about 1500 field images collected in Bangladesh. The data represent four major rice leaf diseases, such as bacterial leaf blight, brown spot, leaf blast and sheath blight. Data pre-processing, including image annotation and data augmentation, was conducted before model training and was followed by the training of the YOLO models. All the models were trained with the same hyperparameters and their performance was evaluated using standard metrics, such as F1 scores, precision, recall and mean average precision (mAP). According to experimental findings, the YOLOv7 recorded the highest performance based on F1 score of 0.77 and mAP of 0.85 in comparison with the rest of the variants. The results suggest that YOLOv7 will be the most appropriate to use instead of other models in the detection of rice leaf disease in real-time, which can be utilised in precision agriculture and mobile-based disease management systems.
Why it matches plant phenotyping methodsイネ葉の病害状態を画像から検出・分類するYOLO手法を複数比較し、フィールド画像データセット上で性能検証しているため、植物フェノタイピング手法が中心である。
abstractThis study evaluates four YOLO variants, such as YOLOv5, YOLOv7, YOLOv8 and YOLOv11, using about 1500 field images collected in Bangladesh.
Plant diseases remain a major challenge to global food production, and timely, accurate, and scalable detection of plant stress is critical to reducing these losses. Recent advances in digital imaging and artificial intelligence offer unprecedented opportunities for precision crop disease detection and management. Yet, existing plant disease datasets remain often fragmented across crop and disease systems, and are largely dominated by controlled-environment imagery. The lack of standardized, interoperable, and representative datasets limits reproducibility, transferability, and scalability of AI systems, thereby constraining their deployment in operational agricultural applications. Here we present LeafMD, an integrated multimodal plant disease dataset and benchmark resource that includes LeafNet 2.0, a large-scale multimodal digital image dataset comprising 255,855 image–text pairs across 37 crop species, 197 crop–disease classes, and 9 geographic regions spanning tropical, subtropical, and temperate agricultural systems. Unlike conventional datasets, LeafNet 2.0 integrates biologically grounded symptom descriptions with image-level annotations of early and late disease stages, enabling symptom-aware analysis of disease progression under realistic field conditions. We further introduce LeafBench 2.0 as part of LeafMD, a visual-question answering benchmark covering nine fine-grained plant pathology tasks, including pathogen classification, lesion characterization, symptom interpretation, and disease severity assessment. Evaluation across 16 vision–language models revealed substantial performance gaps between coarse disease recognition and fine-grained pathological reasoning, while agriculture-adapted models consistently outperformed several larger general-domain architectures on symptom-oriented tasks. Together, LeafNet 2.0 and LeafBench 2.0 establish LeafMD as a multimodal resource for developing disease-aware agricultural foundation models and studying fine-grained pathological reasoning in real-world environments.
Why it matches plant phenotyping methods植物病害の画像・症状記述データセットとベンチマークを構築し、病徴解釈・病変特徴・病害重症度評価を対象にモデル性能を評価しており、植物状態の取得・評価手法が中心である。
abstractHere we present LeafMD, an integrated multimodal plant disease dataset and benchmark resource
Rice leaf diseases can cause a significant decrease in productivity if not treated early, while currently still using a manual diagnosis process that is often slow, inconsistent, and dependent on extension workers. In this study, the SRIKANDI application was developed, a mobile application for image processing for rice leaf diseases using the NASNetMobile Convolutional Neural Network (CNN) architecture. This system is designed using five labels, namely bacterial, blast, brownspot, leafsmut, and healthy leaves. The dataset used consists of 2500 images collected from Kaggle, Mendeley Data, and taken directly. All images go through preprocessing stages of resizing, pixel normalization, and augmentation, then divided into 80% train, 10% test, and 10% validation. The model training was carried out in two stages, namely, 40 epochs of fine-tuning with a learning rate of 0.0008 followed by 20 epochs of fine-tuning with a learning rate of 1e-5, the results obtained by the model with a test set accuracy rate of 96.40%. The trained model is then saved in TFLite format to be integrated into the SRIKANDI mobile application so that it can help farmers detect rice leaf diseases in real-time via camera or taken from the gallery.
Why it matches plant phenotyping methodsイネ葉の画像から病害状態を推定するCNNとモバイルアプリの開発が研究の中心であり、植物の病徴を直接評価するフェノタイピング手法に該当する。
abstractthe SRIKANDI application was developed, a mobile application for image processing for rice leaf diseases using the NASNetMobile Convolutional Neural Network (CNN) architecture.
Abstract Fruit size, shape, color, and percent fruit rot are important quality traits for breeding cranberry ( Vaccinium macrocarpon Ait.). Image analysis can be used to measure these traits, but affordable hardware for standardized image capture and integrated user‐friendly software pipelines are lacking. Additionally, no image‐based method exists to estimate percent fruit rot, an otherwise tediously and subjectively measured trait. We created the BerryBox, a simple and inexpensive lightbox, camera mount, and accompanying software pipeline to standardize the capture and analysis of postharvest fruit images. Trained deep neural network models were highly accurate for segmenting sound fruit (F1 score: 99.4%) and detecting rotten fruit (F1 score: 98.5%). We applied the BerryBox to images of cranberries harvested across 3 years from a 156‐clone breeding population. Narrow‐sense heritability estimates of image‐based fruit color, shape, size, and percent fruit rot ranged from 0.37 to 0.95. Random subsampling showed that 25–30 berries per genotype were sufficient to describe the variation in the full dataset. We demonstrated the utility of BerryBox traits in a small‐scale genetic linkage mapping analysis, detecting significant marker–trait associations that coincided with those of traditionally measured traits. The BerryBox software was able to accurately segment fruit from images of blueberries without model retraining, showing its applicability to other similarly shaped fruits. The software pipeline and BerryBox materials and assembly instructions are publicly available for others to adopt for low‐cost image‐based phenotyping.
Why it matches plant phenotyping methodsクランベリー等の果実形質と腐敗率を画像から抽出する低コスト撮像装置・ソフトウェアパイプラインを開発し、精度検証と他果実への適用性評価を行った、中心的な植物フェノタイピング手法研究である。
abstractWe created the BerryBox, a simple and inexpensive lightbox, camera mount, and accompanying software pipeline to standardize the capture and analysis of postharvest fruit images.
Reproduction assets foundThe paper explicitly states public availability of the annotated image datasets (USDA Ag Data Commons DOI), R analysis scripts, the BerryBox Python software package with pre-trained models, and the model training code, all with author-provided public URLs.Dataset · publics (LOD)
score at a particular marker exceeded that computed at the
α = 0.05 level under null models generated via 1000 random
permutations.
2.8 Data, software, and equipment
instruction availability
The image datasets, along with annotations, are publicly
available through the USDA National Agricultural Library
Ag Data Commons (https://doi.org/10.15482/USDA.ADC/29853332). All analyses in this study were performed in R (v.
4.5.0; R Core Team, 2025). Scripts to replicate the analyses,
along with a list of materials for recreating the Berry-
Box, are available from the GitHub repository https://github.com/neyhartj/BerryBox_FruitPhenotyping. Software for run-
ning the image capture and analysis Open asset ↗10.15482/USDA.ADC/29853332pdf-raw-page:8 lines:1-125Code · publicable through the USDA National Agricultural Library
Ag Data Commons (https://doi.org/10.15482/USDA.ADC/29853332). All analyses in this study were performed in R (v.
4.5.0; R Core Team, 2025). Scripts to replicate the analyses,
along with a list of materials for recreating the Berry-
Box, are available from the GitHub repository https://github.com/neyhartj/BerryBox_FruitPhenotyping. Software for run-
ning the image capture and analysis software pipeline is
available as a Python package from the GitHub reposi-
tory https://github.com/NeyhartLab/berryboxai. The package
includes pre-trained models for berry segmentation and fruit
rot detection, and the code is available from https://github.com/NOpen asset ↗github.com/neyhartj/BerryBox_FruitPhenotypingpdf-raw-page:8 lines:1-125Code · public). Scripts to replicate the analyses,
along with a list of materials for recreating the Berry-
Box, are available from the GitHub repository https://github.com/neyhartj/BerryBox_FruitPhenotyping. Software for run-
ning the image capture and analysis software pipeline is
available as a Python package from the GitHub reposi-
tory https://github.com/NeyhartLab/berryboxai. The package
includes pre-trained models for berry segmentation and fruit
rot detection, and the code is available from https://github.com/NeyhartLab/berryboxai_training_public for training a
custom model using high-performance computing resources
or the widely available Google Colab environment (Rippner
et al., 2022).
3 RESULTOpen asset ↗github.com/NeyhartLab/berryboxaipdf-raw-page:8 lines:1-125Code · publiceyhartj/BerryBox_FruitPhenotyping. Software for run-
ning the image capture and analysis software pipeline is
available as a Python package from the GitHub reposi-
tory https://github.com/NeyhartLab/berryboxai. The package
includes pre-trained models for berry segmentation and fruit
rot detection, and the code is available from https://github.com/NeyhartLab/berryboxai_training_public for training a
custom model using high-performance computing resources
or the widely available Google Colab environment (Rippner
et al., 2022).
3 RESULTS
3.1 Deep learning model training
The trained berry segmentation model achieved an overall
accuracy of 98.9% and an F1 score of 99.4%. The fruit rot
detection mOpen asset ↗github.com/NeyhartLab/berryboxai_training_publicpdf-raw-page:8 lines:1-125Code / dataset availability confirmedEurope PMC · checked 15 Sept 2026
Abstract Zero-shot visual anomaly detection in complex textured domains remains a fundamental challenge for building adaptive, self-organizing cyber-physical systems. Conventional deep learning approaches often rely on closed-set assumptions, require prohibitive pixel-level annotation costs, and suffer severe performance degradation under cross-domain shifts---limiting their deployability in real-world agricultural CPS where novel disease types and unseen crop species continuously emerge. To address these issues, we present TopoLeaf, a training-free and annotation-free anomaly detection framework. By leveraging the robust semantic representations of foundation models (specifically DINOv2), our method introduces two complementary scoring mechanisms: a geometric anomaly score based on local KNN distance in a stability-selected feature subspace, and a topological anomaly score derived from local persistent homology. The topological score effectively captures subtle structural deviations and micro-texture mutations that geometric distances often miss. Extensive experiments on cross-species plant disease benchmarks (3,100+ images across 40 source--target pairs) demonstrate that TopoLeaf achieves highly competitive and structurally robust zero-shot performance, providing a robust perception layer for closed-loop agricultural cyber-physical systems that must maintain diagnostic stability under previously unseen perturbations. Under well-aligned domains, our geometric score achieves near-perfect detection (e.g., 0.994 AUROC on Strawberry). The method exhibits informative failure modes on structurally isolated domains such as Corn (0.169 AUROC), revealing fundamental structural properties of the foundation model's feature manifold. Furthermore, the topological score demonstrates structural complementarity, achieving 0.542 AUROC on the challenging Corn-to-Apple pair where geometric scoring degenerates to 0.221. Module ablation studies confirm that stability-based dimensionality selection consistently improves cross-domain generalization.
Why it matches plant phenotyping methods植物病害の視覚的異常（植物の病徴・状態）を推定する新規画像解析手法を開発し、複数種の病害ベンチマークで検証しているため、植物フェノタイピング手法が中心である。
abstractwe present TopoLeaf, a training-free and annotation-free anomaly detection framework.
Reproduction assets foundThe paper publicly releases its complete TopoLeaf source code (implementation, baselines, evaluation scripts) under the MIT License on GitHub, and all experimental image data derives from the publicly available PlantVillage dataset, which is the leaf-image input used for the paper's anomaly-detection phenotyping and isCode · public427 7.4 Consent to Publish
428 Not applicable.
429 7.5 Data Availability
430 All experimental data used in this study is derived from the publicly available
431 PlantVillage dataset [17], which can be accessed at https://github.com/spMohanty/
432 PlantVillage-Dataset.
433 7.6 Code Availability
434 The complete source code, including implementation of TopoLeaf, baseline com-
435 parisons, and evaluation scripts, is publicly available at https://github.com/
436 Shutong-Hou/TopoLeaf under the MIT License.
437 7.7 Funding
438 This research received no specificOpen asset ↗Shutong-Hou/TopoLeafpdf-layout-page:26 lines:1-44Plant phenotyping relevance match · UnverifiedCrossref · checked 15 Sept 2026
Crop nutrition deficiency poses a major challenge to achieving optimal yield, particularly in smallholder farming systems where timely expert diagnosis is limited. Early detection is crucial to minimize losses and reduce unnecessary fertilizer or pesticide usage. While deep learning offers potential for automated visual diagnosis, most existing approaches operate as black boxes and lack interpretability, explainability, or actionable recommendations. In this work, we present a neurosymbolic framework for early nutrient deficiency detection in ash gourd leaves using the EarlyNSD dataset. Our approach integrates a ResNet-50 backbone with a dual-head design: a classification head for deficiency prediction and a concept-prediction head that quantifies physiologically meaningful visual patterns such as yellowing, edge discoloration, spots, and vein greenness. These concept scores are combined with predefined domain rules to guide the learning of the neural component and to generate transparent, human-aligned explanations for each diagnosis. Building on the model outputs, we incorporate a Retrieval Augmented Generation (RAG)-based pipeline along with an agricultural knowledge base to generate targeted recommendations. This approach overcomes key shortcomings of pure neural models by incorporating domain knowledge in the form of differentiable fuzzy logic rules. The study demonstrates that the proposed framework improves both classification performance and interpretability compared to standard ResNet baselines. Grad-CAM analysis demonstrates that concept-guided attention aligns with symptom-specific regions, such as yellowed areas for Nitrogen deficiency or marginal discoloration for Potassium deficiency, providing visual validation of the reasoning process. Since EarlyNSD is limited in scale and visual diversity, the results are not directly comparable to large open-field datasets. Overall, our results establish a proof of concept for integrating neural detection with symbolic reasoning, enabling interpretable, actionable, and domain-informed nutrient management for practical applications.
Why it matches plant phenotyping methods葉画像から栄養欠乏状態と症状形質を推定する解釈可能な画像解析手法が研究の中心であり、植物表現型の取得・抽出に該当する。
abstractwe present a neurosymbolic framework for early nutrient deficiency detection in ash gourd leaves using the EarlyNSD dataset.
Rice leaf diseases pose a major challenge to crop health and agricultural productivity, particularly when timely and accurate diagnosis is required under natural field conditions. The development of automated disease recognition systems depends heavily on the availability of large, well-annotated image datasets. However, many existing rice leaf disease datasets are limited in terms of environmental variability, disease representation, and real-field imaging conditions. To address this gap, this paper presents BanglaRiceLeaf, an original rice leaf image dataset collected and curated by the authors from the experimental fields of the Bangladesh Rice Research Institute (BRRI), Gazipur, Bangladesh, between July 2023 and July 2024. The dataset contains 4152 images belonging to five classes: Bacterial Leaf Blight, Bacterial Leaf Streak, Sheath Blight, Leaf Blast, and Healthy Leaf. The images were acquired from two rice varieties, BR11 and BRRI dhan34, under natural field conditions across varying illumination environments in order to reflect practical disease recognition scenarios. All images were manually annotated by trained annotators under expert supervision. The dataset is systematically organized and publicly released to support reproducible research in rice disease classification. In addition to dataset presentation, benchmark experiments using Xception, NASNetMobile, and InceptionV3 are provided to demonstrate its applicability for deep learning-based disease recognition. BanglaRiceLeaf is expected to serve as a useful resource for plant disease analysis, comparative model evaluation, and future research in precision agriculture and agricultural computer vision.
Why it matches plant phenotyping methodsイネ葉の病徴・健全状態を画像で分類する公開ベンチマークデータセットであり、データ収集・注釈・ベンチマーク評価が中心です。
abstractthis paper presents BanglaRiceLeaf, an original rice leaf image dataset collected and curated by the authors
Reproduction assets foundThe paper's core asset is the BanglaRiceLeaf rice leaf disease image dataset (4152 field images, five classes), publicly released on Harvard Dataverse with DOI 10.7910/DVN/XAOBYW. No author analysis code or trained model checkpoints are stated as publicly available.Dataset · publicData Identification Number: https://doi.org/10.7910/DVN/XAOBYW
Direct URL to Data: https://dataverse.harvard.edu/dataset.xhtml?persistentId=doi:10.7910/DVN/XAOBYW
Access Instructions: This dataset is publicly available on the Harvard Dataverse repository and can be accessed for academic, research, and instructional purposes.Open asset ↗Harvard Dataverse · doi:10.7910/DVN/XAOBYWhtml-lines:100-131Plant phenotyping relevance match · UnverifiedCrossref · checked 15 Sept 2026
Abstract Early and accurate detection of plant diseases is vital for global food security and sustainable agriculture. While deep learning offers promising solutions, there is a continuous need for architectures that enhance learning capacity and efficiency. This study introduces ViT-KAN, an innovative hybrid model merging the powerful feature extraction of Vision Transformers (ViT) with the flexible, learnable activation functions of Kolmogorov-Arnold Networks (KAN). By replacing the standard Multilayer Perceptron (MLP) classification head of ViT with a KAN module, the proposed architecture aims to better capture nonlinear patterns in agricultural images. Evaluated on the PlantVillage dataset for potato and maize leaf diseases using standard fivefold cross-validation, with final results reported as mean ± standard deviation across the five folds, the model was trained entirely from scratch. ViT-KAN achieved 99.49 ± 0.13% accuracy on the maize dataset and 98.28 ± 0.51% on the potato dataset, compared with 98.92 ± 0.40% and 97.77 ± 0.88%, respectively, for the standard ViT model. Beyond mean accuracy, ViT-KAN showed lower standard deviation across folds, while representative fold curves suggested smoother early training trajectories under the shared training configuration. These findings suggest that ViT-KAN is a promising alternative to conventional ViT-based classification models for plant disease diagnosis.
Why it matches plant phenotyping methods植物葉画像から病害状態を分類する新規ViT-KANモデルを開発・交差検証しており、病害表現型の取得・推定手法が研究の中心である。
abstractThis study introduces ViT-KAN, an innovative hybrid model merging the powerful feature extraction of Vision Transformers (ViT) with the flexible, learnable activation functions of Kolmogorov-Arnold Networks (KAN).
Crop disease identification is still a big problem in agriculture, which results in large yield losses and food lacks, especially in regions dependent on manual monitoring. Traditional methods of identifying plant diseases are often labor intensive, error-prone, and ineffective in early-stage diagnosis. To overcome these limitations, this study proposes a hybrid machine learning model for accurate crop type identification, disease classification, and severity prediction using image data. The methodology utilizes the PlantVillage dataset, encompassing over 50,000 annotated leaf images across 14 crops. After rigorous preprocessing involving image resizing, normalization, and cleaning, Improved Deep Joint Segmentation is applied to localize disease-affected regions. Feature extraction incorporates color, texture (GLCM, LBP), and shape attributes to enhance classification accuracy. A hybrid approach integrating XGBoost for feature selection and Support Vector Machine (SVM) for classification is proposed to capture both overarching trends and intricate details. Experimental results across four major crops—potato, tomato, corn, and grape—demonstrate superior performance, with the hybrid model achieving 98.6% accuracy, 98.3% precision, 99.0% recall, and 99.1% F1-score. The model outperforms existing approaches, offering a robust, scalable, and accurate solution for early crop disease detection in precision agriculture.
Why it matches plant phenotyping methods画像から病変領域を抽出し、植物病害の分類と重症度を推定する機械学習ワークフローが研究の中心であり、植物状態の表現型計測に該当する。
abstractthis study proposes a hybrid machine learning model for accurate crop type identification, disease classification, and severity prediction using image data.
ABSTRACT Plant disease is a physiological or structural problem caused by pathogens such as fungi, bacteria, viruses, or environmental factors, which disrupts plant development, yield, and overall health. Furthermore, the formation of new and more aggressive diseases complicates disease control, making it harder for farmers to preserve their crops while ensuring consistent food production. In this manuscript, to advance Progressive Graph Convolutional Networks enable early detection and continuous monitoring of plant infections in smart agriculture (PGCN‐EDM‐PID) is proposed. Initially, input images of food grains such as rice, wheat, and maize are collected from internet sources. To implement this, the input image is preprocessed using the Adaptive Two‐Stage Unscented Kalman Filter (ATSUKF), which performs resizing, sharpening, cropping, contrast enhancement, brightness adjustment, and Gaussian blurring on the images from the dataset. Then the preprocessed images are augmented based on horizontal flip, width shift, height shift, vertical flip, rotation range, shear, zoom and brightness. Additionally, Make Sense AI is proposed to annotate the images in the dataset under each class. Then the preprocessed and augmented images are fed to Progressive Graph Convolutional Networks (PGCN) to detect and classify the plant diseases. Generally, PGCN does not show adapting optimization approaches to find ideal factors to assure accurate plant disease detection. Therefore, the Augmented Red Panda Optimizer (ARPO) was proposed to optimize the weight parameter of PGCN, which accurately detects the plant disease. Then the proposed PGCN‐EDM‐PID is executed in Python and the performance metrics such as Accuracy, Precision, False Positive Rate (FPR), True Positive Rate (TPR), Specificity, Recall, F1‐score, Mean Squared Error (MSE), Root Mean Squared Error (RMSE) and Mean Absolute Error (MAE) are analyzed. Performance of the PGCN‐EDM‐PID approach attains high accuracy, high Precision, high Recall when analyzed through existing techniques like Real‐time plant disease dataset improvement and detection of plant disease utilizing DL (PDD‐DPD‐CNN), Detection of plant leaf diseasesusing deep convolutional neural network methods (DPLD‐DCNN), New DL algorithm for cross‐crop detection of plant disease: A generalized model for detecting unhealthy leaves (CPDD‐SVM) methods respectively.
Why it matches plant phenotyping methods植物画像から病害を検出・分類する画像解析手法の開発と性能評価が研究の中心であり、感染状態という植物表現型を直接推定している。
abstractProgressive Graph Convolutional Networks enable early detection and continuous monitoring of plant infections in smart agriculture (PGCN‐EDM‐PID) is proposed.
Plant diseases remain one of the most persistent and economically damaging threats to global food security, with yield losses across major staple crops running into the tens of billions of dollars each year. The rise of artificial intelligence, and convolutional neural networks (CNNs) in particular, has opened genuinely new possibilities for detecting plant disease early, accurately, and at scale. This review critically examines the state of CNN-based plant disease detection within the wider context of smart agriculture and agribusiness sustainability. Drawing on peer-reviewed literature published between January 2016 to February 2026, the paper traces the evolution of CNN architectures, training methods, and benchmark performance across a wide range of crops and disease categories. Particular attention is given to transfer learning, data augmentation, and lightweight architecture design as responses to the recurring problem of limited annotated training data. The paper also considers how CNNs are being combined with complementary technologies, including the Internet of Things, unmanned aerial vehicles, and edge computing, and what this means for deployment in real farming conditions. Economic and sustainability dimensions are explored throughout, with attention to whether the gains from AI adoption are likely to reach smallholder farmers or remain concentrated among larger, better-resourced agribusinesses. Despite genuinely impressive results under controlled benchmark conditions, several barriers to field deployment persist: dataset bias, poor generalisation in complex agricultural environments, computational constraints, and a continuing shortfall in model interpretability. The review closes by identifying priority research directions, including cross-domain transfer learning, explainable AI, the development of field-representative datasets, and participatory approaches to tool design. Taken together, the evidence suggests that CNN-based disease detection holds real promise for agribusiness sustainability, but realising that promise will depend on sustained interdisciplinary collaboration and deployment strategies that are sensitive to local context rather than assuming one-size-fits-all solutions.
Why it matches plant phenotyping methods植物病害を画像から検出・評価するCNN手法を中心に、モデル、学習法、ベンチマーク、汎化性、データセット、実運用上の課題をレビューしており、植物状態の画像ベース推定に関する方法論的レビューである。
abstractThis review critically examines the state of CNN-based plant disease detection within the wider context of smart agriculture and agribusiness sustainability.
Agriculture remains the backbone of global food security, yet crop diseases, nutrient deficiencies, water stress, and pest infestations cause annual yield losses estimated at 20–40% worldwide. Conventional field scouting methods are labour-intensive, time-consuming, and fail to capture the spatial heterogeneity of large farms. This paper presents a Drone-Based Crop Health Analysis and Precision Agriculture System (DBCHAPS) that integrates multi-spectral and RGB imaging drones, deep learning-based crop disease detection, vegetation index analysis, variable-rate prescription mapping, and autonomous precision spraying. A DJI Matrice 300 RTK drone equipped with a MicaSense RedEdge-MX multi-spectral camera captures high-resolution aerial imagery across five spectral bands (Blue, Green, Red, Red-Edge, Near Infrared). The captured data is processed through a custom-trained YOLOv8-based convolutional neural network (CNN) pipeline to detect 18 distinct crop diseases and stress conditions across rice, wheat, and cotton crops. Concurrently, vegetation indices (NDVI, NDRE, GNDVI, SAVI) are computed to generate prescription maps for site-specific fertilizer and pesticide application. Experimental evaluation on a 120 acre farm in Thanjavur, Tamil Nadu over two crop seasons demonstrates a disease detection accuracy of 96.3%, early stress detection 8–12 days before visible symptoms, and a 31% reduction in agrochemical usage through variable-rate application. The system achieves an end-to-end field analysis time of under 45 minutes for 100 acres. Keywords — UAV, Precision Agriculture, Crop Disease Detection, Multi-Spectral Imaging, NDVI, YOLOv8, Deep Learning, Variable-Rate Application, Remote Sensing, Smart Farming.
Why it matches plant phenotyping methodsドローンのマルチスペクトル/RGB画像とYOLOv8を用いて作物の病害・ストレス状態を推定するシステムを開発し、精度と運用性能を評価しており、植物フェノタイピング手法が中心である。
abstractThis paper presents a Drone-Based Crop Health Analysis and Precision Agriculture System (DBCHAPS) that integrates multi-spectral and RGB imaging drones, deep learning-based crop disease detection, vegetation index analysis, variable-rate prescription mapping, and autonomous precision spraying.
Agriculture is one of the most important sectors contributing to economic development and global food security. However, plant diseases caused by fungi, bacteria, viruses, and other pathogens significantly reduce crop yield and quality, leading to substantial economic losses for farmers. Early and accurate identification of plant diseases is essential for effective crop management and timely application of suitable pesticides. Conventional methods of disease diagnosis rely on manual inspection by agricultural experts, which is time-consuming, labor-intensive, expensive, and often inaccessible to farmers in remote areas. Recent advancements in Artificial Intelligence (AI) and Deep Learning have provided efficient solutions for automating plant disease detection through image analysis. This project, "Plant Disease Identification and Pesticides Recommendation System Using Convolutional Neural Network (CNN) for Crop Protection," presents an intelligent system that automatically identifies plant diseases from leaf images and recommends appropriate pesticides for effective crop protection. The proposed system utilizes a Convolutional Neural Network (CNN), a deep learning model specifically designed for image classification tasks. The CNN model is trained using a large dataset of healthy and diseased plant leaf images collected from publicly available agricultural datasets. During training, the model learns to recognize disease-specific visual features such as color variations, lesion patterns, texture changes, and leaf deformities. Image preprocessing techniques, including resizing, normalization, and data augmentation, are employed to improve the quality of the input images and enhance the overall performance of the model. When a farmer uploads an image of a plant leaf through the system, the trained CNN model analyzes the image and accurately classifies it as either healthy or affected by a specific disease. After identifying the disease, the system recommends suitable pesticides, fungicides, insecticides, or biological treatments based on an agricultural knowledge database. It also provides additional information such as recommended dosage, application method, spraying schedule, safety precautions, and preventive measures to ensure responsible pesticide usage and minimize environmental impact. The proposed system offers several advantages, including rapid disease detection, high classification accuracy, reduced dependence on agricultural experts, optimized pesticide application, lower crop losses, improved productivity, and support for sustainable farming practices. Furthermore, the system can be deployed as a web or mobile application, enabling farmers to access disease diagnosis and treatment recommendations anytime and anywhere using smartphones or other digital devices. Overall, the proposed CNN-based plant disease identification and pesticide recommendation system provides a reliable, cost-effective, and intelligent solution for modern agriculture. By combining image processing, deep learning, and agricultural expertise, the system supports precision farming, enhances decision-making, reduces unnecessary pesticide usage, and contributes to increased crop productivity, environmental sustainability, and long-term food security.
Why it matches plant phenotyping methods葉画像から植物病害の状態をCNNで直接推定する手法が研究の中心であり、病害症状の画像ベース表現型計測に該当する。農薬推薦も含むが、植物病害識別というフェノタイピング要素が明示的である。
abstractpresents an intelligent system that automatically identifies plant diseases from leaf images and recommends appropriate pesticides for effective crop protection.
The co-evolutionary arms race between crops and their parasites requires continuous identification of new resistance mechanisms. Broomrape (Orobanche cumana), a root parasitic plant, poses a severe threat to sunflower (Helianthus annuus) production, yet the genetic architecture underlying host resistance remains poorly understood. To address this, we established a high-throughput phenotyping platform to quantify root infestation across a diverse sunflower association mapping (SAM) population. Combining this phenotypic resource with a dual genome-wide association study (GWAS) strategy based on both single nucleotide polymorphisms (SNPs) and k-mers, we highlight the genetic basis of broomrape resistance at unprecedented resolution. Our analyses revealed quantitative trait loci (QTLs) and identified novel candidate genes, including putative leucine-rich repeat receptor kinases potentially involved in parasite recognition and defense activation. Importantly, the k-mer approach circumvented reference genome bias and uncovered key genomic introgressions from wild Helianthus relatives that contribute substantially to resistance. These findings demonstrate the utility of integrating high-resolution phenotyping with advanced association mapping to dissect complex host-parasite interactions. Moreover, they emphasize the enduring value of wild germplasm as a reservoir of adaptive variation, providing crop breeders with crucial tools to counter the rapid evolutionary dynamics of parasitic plants.
Why it matches plant phenotyping methods根部の寄生程度を定量する高スループット表現型解析プラットフォームの確立が明示され、遺伝解析の基盤として方法が実質的に扱われている。
abstractwe established a high-throughput phenotyping platform to quantify root infestation across a diverse sunflower association mapping (SAM) population.
Reproduction assets foundThe paper's Data availability statement explicitly deposits the paper-specific raw phenotyping images on Zenodo, the k-mer genotype data on the sunflower genome database, and the authors' analysis code on the Hübner lab GitHub repository, all with public URLs.Dataset · publicAll phenotypes raw images for Gadot and Yavor are available through the Zenodo repository ( https://doi.org/10.5281/zenodo.18961268 ).Open asset ↗Zenodo · 10.5281/zenodo.18961268lines:238-238Code · publicCode is accessible through the Hübner lab github: https://github.com/hubner-lab/Sunflower-Broomrape-paper .Open asset ↗Hübner lab github · hubner-lab/Sunflower-Broomrape-paperlines:238-238Code / dataset availability confirmedCrossref · checked 14 Sept 2026
Published1 Jul 2026International Journal of IoT, Embedded Systems and Industrial AutomationCited by 0 · OpenAlex ↗
Modern agriculture is rapidly adopting Artificial Intelligence (AI) and Internet of Things (IoT) technologies to improve crop monitoring and decision-making. Many existing systems focus either on water stress detection or pest detection separately. The proposed system integrates both functions into a single platform. It uses a camera module and environmental sensors connected to a Raspberry Pi (5/4) as the main controller. A Convolutional Neural Network (CNN) model processes leaf images captured by the AI camera, while a soil moisture sensor supports water stress analysis. The system classifies crops into three categories: healthy, water-stressed, and pest-infected. Based on the output, it provides real-time recommendations for irrigation and pesticide application. This reduces manual inspection, prevents unnecessary chemical usage, saves water, and improves crop productivity.
Why it matches plant phenotyping methods植物の葉画像と土壌水分センサーを用いて、健康・水ストレス・害虫感染という植物の状態を自動分類する統合センシング基盤を開発しており、表現型取得・判定が中心的です。
abstractThe proposed system integrates both functions into a single platform.
Reproduction assets foundThe paper's CNN phenotyping/classification analysis is built directly on two public Kaggle image datasets (PlantVillage plant disease and Crop Water Stress), explicitly cited with URLs. No author code or trained model is deposited.Dataset · publicThe PlantVillage Dataset was used for
plant disease detection, and it is available at https://www.kaggle.com/datasets/emmarex/plantdisease.Open asset ↗Kaggle · emmarex/plantdiseasepdf-page:7 lines:1-57Dataset · publicThe Crop Water Stress Dataset was used for crop water stress analysis, and it can be accessed at
https://www.kaggle.com/datasets/harshilsharma/crop-water-stress.Open asset ↗Kaggle · harshilsharma/crop-water-stresspdf-page:7 lines:1-57Plant phenotyping relevance match · UnverifiedCrossref · checked 15 Sept 2026
Early and accurate plant disease diagnosis is essential for sustainable crop production and effective disease management. This study presents an Explainable Gradient-Based Convolutional Neural Network (EG-CNN) that integrates leaf image data with gene expression and metabolomics information to enhance disease classification while providing transparent and interpretable predictions. The proposed framework was evaluated on four major plant diseases, powdery mildew, blight, anthracnose, and leaf spot, using a multimodal dataset comprising 10,000 images and associated omics data. Comparative analysis against Traditional CNN, ResNet-50, Vision Transformer (ViT), and CNN-LSTM models demonstrated the superior performance of EG-CNN. The model achieved 97.4% accuracy, 97.1% precision, 96.8% recall, and a 96.9% F1-score, outperforming all benchmark approaches. Paired t-test results revealed statistically significant improvements (p 0.05) over competing models. Confusion matrix analysis indicated minimal misclassification across disease classes, while ROC analysis produced near-perfect AUC values, confirming excellent class separability, sensitivity, and specificity. Five-fold cross-validation further demonstrated robust generalization, with accuracy ranging from 97.1% to 97.6%. Grad-CAM visualizations successfully identified disease-relevant regions, including lesions, discoloration, and necrotic tissues, thereby enhancing model transparency and user trust. The integration of omics data also improved biological interpretability by linking predictions to underlying molecular responses. In conclusion, the proposed EG-CNN framework provides a highly accurate, robust, and explainable solution for plant disease diagnosis. Its multimodal architecture and strong generalization capability make it a promising tool for precision agriculture and real-time disease monitoring applications.
Why it matches plant phenotyping methods植物葉画像から病害症状を推定する説明可能な深層学習フレームワークを開発し、複数モデルとの比較、交差検証、Grad-CAMによる病徴領域の評価を行っており、植物表現型取得・判定手法が中心である。
abstractThis study presents an Explainable Gradient-Based Convolutional Neural Network (EG-CNN) that integrates leaf image data with gene expression and metabolomics information to enhance disease classification while providing transparent and interpretable predictions.
Fruit diseases caused by fungal, bacterial, and viral pathogens cause devastating pre- and post-harvest losses to Indian agriculture, particularly in Maharashtra where Guava, Mango, Orange, Papaya, and Pomegranate are major horticulture crops. Accurate, early-stage disease identification directly impacts farmer income, food security, and precision crop management. Conventional manual inspection by agronomists is subjective, time-consuming, and not scalable across thousands of orchard acres. Automated deep learning-based image analysis has emerged as a transformative solution, offering high accuracy, speed, and field deployability. Existing deep learning models for plant disease detection are predominantly trained on the real time database, which inadequately represents Indian fruit crop species. Furthermore, published systems focus on binary disease presence detection and lack disease severity grading — a critical requirement for treatment decision-making. The absence of expert-verified datasets and the visual overlap among disease classes (such as Phytophthora vs. Scab in Guava, and Powdery Mildew vs. Ring-spot in Papaya) present significant classification challenges. Limited training data for rare classes such as Stylerandroot (Guava, 310 samples) and Bacterial Blight (Pomegranate, 304 samples) further compounds model generalization. This study presents an end-to-end deep learning framework using VGG-16 and VGG-19 architectures trained on a novel, expert-verified dataset of 7,372 approved images spanning 22 disease/healthy classes across 5 fruit types, after on filed validation. The pipeline includes image preprocessing (CLAHE, Gaussian denoising, normalization), hybrid multi-feature extraction (CNN features, GLCM, LBP, Color Histograms), transfer learning with progressive fine-tuning, and a cascaded severity estimation module. Three algorithms are designed: (1) a Transfer Learning Classification Algorithm using VGG-16/VGG-19 backbone with softmax multi-class head, (2) a Hybrid Feature Fusion Algorithm combining CNN deep features with handcrafted descriptors for improved minority-class performance, and (3) a Cascaded Rule-CNN Severity Estimation Algorithm classifying disease progression into Healthy, Mild, Moderate, and Severe categories. VGG-19 achieved 96.1% overall accuracy, 95.1% precision, 94.5% recall, and a macro F1-score of 0.942, significantly outperforming VGG-16 (94.5% accuracy, F1: 0.918). Mango classification achieved the highest accuracy at 97.8%, while severity estimation reached 91.2% overall accuracy with the Mild category being the most challenging at 86.4%.The proposed system demonstrates that expert-verified, domain-specific datasets combined with transfer learning and hybrid feature fusion significantly advance the state of fruit disease detection for Indian agriculture. This framework provides a scalable, interpretable, and practically deployable solution for precision horticulture.
Why it matches plant phenotyping methods植物画像から病害状態と重症度を推定する深層学習手法、データセット、評価を中心的に開発しており、植物表現型計測の方法論的研究に該当する。
abstractThis study presents an end-to-end deep learning framework using VGG-16 and VGG-19 architectures trained on a novel, expert-verified dataset of 7,372 approved images spanning 22 disease/healthy classes across 5 fruit types
Agricultural productivity, crop quality, and food security worldwide can be highly impacted by plant diseases. Early detection and accurate diagnosis of disease in crops are vital for minimizing losses and sustaining precision farming practices. Regrettably, all modern disease diagnosis approaches based on deep learning techniques have concentrated on image classification, neglecting the time dependency of the disease process during different stages of the crops’ development cycle. Furthermore, traditional CNN-LSTM models have been associated with increased computational complexities and high memory costs. This research suggests a CNN-GRU hybrid model for early disease detection using sequential analysis of crop images. The suggested technique involves integrating the CNN and GRU, which helps the network develop the capability to learn spatiotemporal information on the crop plant disease. Datasets of sequential crop images that represent the progression stages of the diseases were collected from Plant Village and augmented crop images. The CNN portion of the model is responsible for extracting spatiotemporal characteristics of the diseases, including lesions, discolored parts, and texture changes. It is evident that the suggested Hybrid CNN-GRU method has higher accuracy (94.1%), precision (94.0%), recall (93.9%), and F1-score (94.0%) compared to CNN and CNN-LSTM models. The validation of efficacy and robustness of the suggested approach has been confirmed through standard deviation, paired t-test, and 5-fold cross-validation. Furthermore, the method demonstrated high scalability and strong tolerance to variations in light intensity, noise, and images from the fields of crop plants.
Why it matches plant phenotyping methods植物病害の病変・変色・テクスチャ変化を連続画像から抽出し、CNN-GRUモデルで病害状態を推定する手法の開発と検証が中心であるため。
abstractThis research suggests a CNN-GRU hybrid model for early disease detection using sequential analysis of crop images.
This study presents a deep learning-based framework for automated tomato leaf disease detection using a transfer learning approach built on ResNet18 architecture. The system is designed to classify 10 disease categories using image inputs resized to 224×224 pixels, leveraging ImageNet pre-trained weights to enhance feature extraction. The dataset consists of approximately 18,345 training samples with a batch size of 16 and trained over 10 epochs using the Adam optimizer and CrossEntropy loss function. Experimental results demonstrate strong classification performance, achieving a peak validation accuracy of 98.2% at epoch 9, with validation loss reduced to 0.64 from an initial value of approximately 1.8. The model shows high confidence predictions, with over 90% of test samples falling within the 90–100% confidence range. Per-class F1-scores range between 0.82 and 0.95, indicating consistent performance across multiple disease categories. The confusion matrix reveals strong diagonal dominance, confirming correct classification for most classes; however, specific misclassification patterns were observed. For instance, Bacterial_spot and Early_blight exhibit mutual confusion, while Septoria_leaf_spot shows complete misclassification into Tomato_mold, indicating limitations in distinguishing visually similar disease patterns. A balanced test dataset with class distribution ranging between 9% and 11% ensures unbiased evaluation. Additionally, Grad-CAM visualization confirms that the model focuses on biologically relevant regions such as lesion areas and leaf textures, improving interpretability. Despite achieving high accuracy under controlled conditions, the model’s generalization to real-world environments remains a challenge. The study highlights the need for improved robustness against variations in lighting, background, and disease severity. Overall, the proposed system demonstrates strong potential for precision agriculture applications, particularly in mobile-based disease diagnosis systems for farmers.
Why it matches plant phenotyping methodsトマト葉の病徴を画像から分類する深層学習手法を開発・評価しており、植物の病害状態を直接推定する方法が研究の中心です。
abstractThis study presents a deep learning-based framework for automated tomato leaf disease detection using a transfer learning approach built on ResNet18 architecture.
Fungal diseases cause significant yield losses in rice, making early detection and accurate classification essential for effective disease management. In this study, hyperspectral imaging technique was used to acquire the spectral signatures of three major fungal diseases viz., brown spot, blast and sheath blight in rice. The acquired hyperspectral images were pre-processed using Standard Normal Variate (SNV) transformation and Savitzky-Golay filtering, followed by pixel-wise spectral data extraction. Principal Component Analysis (PCA) was used to investigate spectral variability among healthy and diseased leaf samples. Subsequently, machine learning models including artificial neural networks (ANN), support vector machines (SVM) and random forests (RF) were employed to classify these diseases based on the acquired and pre-processed spectral signature data. The results indicated that the ANN model outperform the others, achieving an accuracy of 98%, followed by SVM at 94%, and RF at 88%. Among the three models, the ANN exhibited the highest accuracy, precision and recall, making it the most effective model for disease detection and classification. Hyperspectral imaging, combined with machine learning, offers an affordable and efficient solution for large-scale detection and assessment of fungal diseases in rice crops.
Why it matches plant phenotyping methodsイネ葉の病害状態をハイパースペクトル画像から取得し、機械学習で検出・分類する手法が研究の中心であり、植物病害表現型の技術評価に該当する。
abstracthyperspectral imaging technique was used to acquire the spectral signatures of three major fungal diseases viz., brown spot, blast and sheath blight in rice.
Agriculture remains one of the most essential sectors for sustaining human life and economic stability. However, crop diseases continue to pose a serious threat to agricultural productivity, often leading to significant financial losses for farmers. Traditional disease identification methods rely heavily on manual inspection, which is time-consuming, requires expert knowledge, and is not always accurate. In this paper, a smart crop disease detection system is proposed using machine learning techniques. The system focuses on analyzing leaf images to identify visible symptoms of diseases at an early stage. Image preprocessing techniques are applied to enhance the quality of the input data, followed by feature extraction and classification using an efficient learning model. The proposed approach aims to reduce human effort while improving detection accuracy. The model is trained and tested on a dataset of crop leaf images and demonstrates promising performance in identifying multiple types of plant diseases. The results indicate that the system can serve as a supportive tool for farmers by providing quick and reliable predictions. This approach not only improves productivity but also contributes to sustainable agricultural practices. Future enhancements can further improve real-time detection and expand the system for a wider range of crops
Why it matches plant phenotyping methods葉画像から植物病害の可視症状を抽出・分類する機械学習手法が研究の中心であり、植物状態の表現型推定に該当する。
abstractThe system focuses on analyzing leaf images to identify visible symptoms of diseases at an early stage.
Global agriculture faces severe economic threats from plant diseases, necessitating automated diagnostic systems. However, standard deep learning models feature over-parameterized architectures that require prohibitive computational resources, limiting field deployment. This paper presents an efficient, lightweight sequential Convolutional Neural Network (CNN) optimized for rapid multi-class plant disease classification using the Kaggle New Plant Diseases Dataset. The proposed architecture streamlines feature extraction by applying a single max-pooling layer after every two 32-filter convolutional layers. To prevent overfitting, a dual dropout strategy (0.25 and 0.5) is integrated alongside a dense layer of 1,500 units. Trained over 10 epochs using the Adam optimizer (learning rate = 0.001) and varying batch sizes (32 to 512), the model demonstrated swift convergence, achieving a peak training accuracy of 98.15% and a validation accuracy of 95.87%. Evaluated across a test support of 70,295 images spanning 38 distinct crop classes, the network delivered an overall macro and weighted average of 1.00 for precision, recall, and F1-score. These results prove that an optimized, computationally economic sequential framework can match complex architectures, providing a viable solution for real-time edge deployment in precision agriculture.
Why it matches plant phenotyping methods植物画像から病害状態を分類する軽量CNNを開発・評価しており、病害表現型の取得・推定手法が研究の中心です。
abstractThis paper presents an efficient, lightweight sequential Convolutional Neural Network (CNN) optimized for rapid multi-class plant disease classification using the Kaggle New Plant Diseases Dataset.
Tomato (Solanum lycopersicum) is an important horticultural crop worldwide, and its productivity is significantly limited by the widespread occurrence of foliar diseases that gradually modify leaf morphology and physiological function. Disease progression in the leaves entails intricate spatial transformations like lesion development, vein proliferation and disruption in venation, tissue necrosis, and disruption of normal laminar architecture. Often, these structural alterations may be challenging to express in a conventional visual or categorical scoring system, which is often subjective and lacks granularity. In the present study, a spatial multi-scale fractal analysis framework has been proposed to quantitatively capture structural degeneration in tomato leaves during disease progression. Leaf images from sources with known disease severity levels were analyzed through fractal geometry-based metrics, focusing on two key descriptors: fractal dimension (FD) and lacunarity.to express structural complexity and heterogeneity. Fractal dimension serves as a description of overall morphological complexity in this context, whereas lacunarity is widely used to quantify spatial irregularity and gap distributions within leaf tissues. Multi-scale analysis was employed to examine structural changes at different spatial resolutions. This helped us better understand both global shape changes and localized tissue damage. The findings demonstrate a steady reduction in fractal dimension as disease severity escalates, indicating a gradual deterioration of structural complexity. On the other hand, lacunarity values increase as the disease gets worse, which means that the leaf architecture becomes more varied and broken up. The results show that fractal-based spatial analysis is a strong, non-destructive, and objective way to measure how disease damages the structure of plant leaves. This technique holds considerable promise for utilization in automated plant disease diagnostic systems, precision agriculture, and digital plant phenotyping platforms.
Why it matches plant phenotyping methods病害進行に伴う葉の構造劣化を、画像からフラクタル次元とラacunarityで定量化する解析手法が研究の中心であり、植物表現型の取得・抽出に該当する。
abstracta spatial multi-scale fractal analysis framework has been proposed to quantitatively capture structural degeneration in tomato leaves during disease progression.
Starfruit (Averrhoa carambola) is a commercially important tropical fruit that is highly susceptible to various diseases, including anthracnose, fruit borer infestation, and bed bug damage, which significantly reduce yield and quality. Early and accurate detection of these diseases is essential for effective crop management and sustainable agricultural production. This study presents a deep learning-based approach using a custom Convolutional Neural Network (CNN) model for automated classification of starfruit diseases from image data. The proposed model is trained on a dataset comprising multiple classes, including Carambola Anthracnose Disease, Carambola Bed Bugs Disease, Carambola Fruit Borer Disease, Healthy Fruits, and Healthy Leaves. The CNN architecture is designed to efficiently extract spatial features and perform high-precision classification. Extensive experimentation shows that the model achieves exceptional performance with an accuracy of 99.80% and a near-zero loss, demonstrating highly stable learning and excellent generalization capability. The results indicate perfect or near-perfect classification across all categories, highlighting the robustness of the proposed model. This work confirms that custom CNN-based systems can significantly enhance automated plant disease detection and provide an effective solution for precision agriculture, enabling early intervention and improved crop health management. Keywords: Start fruit; CNN Model; Attention Mechanism; fruit diseases.
Why it matches plant phenotyping methods植物画像から病害状態を自動分類するCNN手法の開発・評価が研究の中心であり、植物病害フェノタイピングに該当する。
abstractThis study presents a deep learning-based approach using a custom Convolutional Neural Network (CNN) model for automated classification of starfruit diseases from image data.
Rice is an important staple food crop in the world, but the yield is dramatically lowered by fungal diseases including brown spot, leaf blast and neck blast. Thus, disease detection algorithms that are not only computationally efficient but also accurate enough are crucial for the real-time application of precision agriculture systems. In this paper, an Optimized Convolutional Neural Network from Modified Lightweight Weight Convolutional Neural Network (MLWCNN) is proposed to multi-class rice disease classification for the purpose of achieving high accuracy with low computational complexity. The proposed MLWCNN is tested on a Kaggle public data set, which comprises the rice leaf disease dataset as well as sub-images of healthy and diseased leaves with 3-Fold and 5-Fold cross-validation for robustness and unbiased performance evaluation. Experimental results show that they converge consistently well on objective and generalize well under various validation settings. With the strictest evaluation setup (i.e., 5-Fold cross-validation and a training stage of 30 epochs) the novel model demonstrated a validation accuracy just under around 94%. A comparison with state-of-the-art deep learning networks such as wide VGG16, InceptionV3, ResNet50, ResNet152 SqueezeNet and MobileNetV2 on typical datasets proves that the proposed MLWCNN achieves competitive classification accuracy with a higher speedup. Analyzing the class‐wise performance using confusion matrix, balanced prediction characteristics throughout all disease categories are observed. Moreover, computational cost analysis demonstrates that the proposed model needs much less floating-point operations (0.000095 GFLOPs) than deep models, which is ideal for deployment in resource-limited mobile, edge and embedded agricultural applications. The experimental results demonstrate that the MLWCNN achieved high accuracy, thereby providing a practical and scalable solution for automated rice disease detection in precision agriculture.
Why it matches plant phenotyping methodsイネ葉の病害状態を画像から分類するCNN手法を開発し、公開データセットと交差検証で性能評価しており、植物フェノタイピング手法が中心である。
abstractan Optimized Convolutional Neural Network from Modified Lightweight Weight Convolutional Neural Network (MLWCNN) is proposed to multi-class rice disease classification
Plant diseases significantly reduce agricultural productivity, threaten global food security, and cause substantial economic losses worldwide. Early and accurate identification of crop diseases is therefore essential for implementing timely disease management strategies and improving agricultural sustainability. However, conventional deep learning-based plant disease classification approaches often suffer from limited training data, high intra-class similarity, complex inter-class variations, poor generalization across diverse crop species, and limited interpretability. To overcome these challenges, this paper proposes QPlantNet, a Quantum-Inspired Diffusion-Augmented Capsule Network for accurate multi-crop plant disease classification. The proposed framework integrates a diffusion-based generative augmentation module, a capsule network-based feature extraction mechanism, and a quantum-inspired optimization strategy into a unified architecture. The diffusion augmentation module generates realistic synthetic disease images by learning complex visual distributions of infected crop regions, thereby improving dataset diversity and reducing overfitting. The capsule network effectively preserves hierarchical and spatial relationships among disease symptoms, enabling robust recognition of visually similar disease patterns. Furthermore, the quantum-inspired optimizer enhances parameter exploration, accelerates convergence, and improves generalization by avoiding local optima during model training. To improve model transparency, Gradient-weighted Class Activation Mapping (Grad-CAM) is incorporated for visual explanation of disease prediction decisions. Extensive experiments on benchmark multi-crop plant disease datasets demonstrate that QPlantNet consistently outperforms conventional CNN, ResNet, EfficientNet, Vision Transformer, and Capsule Network models. The proposed framework achieves an overall classification accuracy of 99.10%, 98.90% precision, 99.00% recall, and an F1-score of 98.95%. Additional evaluation using ROC curves, Precision–Recall analysis, and explainability assessment confirms the robustness, reliability, scalability, and practical applicability of the proposed framework for intelligent plant disease diagnosis and precision agriculture applications.
Why it matches plant phenotyping methods植物病害画像から病徴を分類する新規画像解析手法を開発・評価しており、植物の病害状態を観測する方法が研究の中心です。
abstractExtensive experiments on benchmark multi-crop plant disease datasets demonstrate that QPlantNet consistently outperforms conventional CNN, ResNet, EfficientNet, Vision Transformer, and Capsule Network models.
Plant diseases pose a serious threat to global food production, leading to yield losses, increased production costs, and environmental damage. Plant pests and diseases have widespread negative impacts on economic, ecological, environmental, and human health, and calculating the true cost of these damages is extremely difficult. Traditional diagnostic methods also present significant limitations in terms of time and cost. This study adopts an image processing-based approach to this problem. Using the Crop Disease Detection dataset, plant disease detection was performed using CNN, DNN, K-NN, SVM, XGBoost, and Random Forest algorithms, employing both deep learning and machine learning methods. The study demonstrates that CNN architectures designed from scratch, without resorting to pre-trained models such as ResNet and MobileNet, can also exhibit high performance. The highest accuracy rate was obtained with the CNN model at 94.08%. In machine learning models, grid search was used for hyperparameter optimization, and the best results were achieved through this method.
Why it matches plant phenotyping methods植物葉の画像から病害状態を推定する画像処理・機械学習手法を比較評価しており、病害フェノタイピング手法が研究の中心である。
abstractThis study adopts an image processing-based approach to this problem.
Early detection of chili plant diseases is essential for preventing yield loss, yet practical deployment remains challenging due to inconsistent illumination, leaf orientation variability, and the limited computational capacity of low-cost imaging hardware. This study proposes an integrated detection framework combining an ESP32-CAM acquisition pipeline, MQTT-based transmission, and a Python inference engine running a fine-tuned ResNet-18 model optimized for real-world noise conditions. The research aims to determine whether domain-aligned fine-tuning meaningfully improves generalization performance compared to older non-optimized models under field-like variability. Using a four-day observational design with two leaf subsets, the fine-tuned models consistently outperformed their non-fine-tuned counterparts in overall accuracy, per-class stability, and positional robustness. Real-time deployment using the Telegram Bot API successfully delivered classification results and images with low latency, demonstrating operational feasibility for remote plant health monitoring. These findings indicate that targeted fine-tuning is essential for transforming CNN-based classifiers from laboratory prototypes into stable, field-ready systems capable of supporting early disease detection in resource-constrained agricultural environments. Additionally, due to chili is widely cultivated in agroforestry systems in Indonesia, the proposed early disease detection framework offers substantial benefits for maintaining productivity in heterogeneous microclimatic conditions where manual diagnosis is more difficult.
Why it matches plant phenotyping methodsチリ葉の病害状態を画像から分類するCNNベースの取得・推論フレームワークを開発し、非最適化モデルとの性能比較と実環境展開を検証しており、植物フェノタイピング手法が中心である。
abstractThis study proposes an integrated detection framework combining an ESP32-CAM acquisition pipeline, MQTT-based transmission, and a Python inference engine running a fine-tuned ResNet-18 model optimized for real-world noise conditions.
Penelitian ini dirancang untuk mengembangkan sistem klasifikasi penyakit pada daun tomat menggunakan metode Deep Learning dengan arsitektur Convolutional Neural Network (CNN) berbasis arsitektur model EfficientNetB0 dengan pendekatan Transfer Learning. Dataset yang digunakan untuk penelitian diambil dari Kaggle (ashishmotwani/tomat) dan terdiri dari lebih 20.000 gambar daun tomat yang terbagi menjadi 11 kelas yaitu 10 kelas daun sakit dan 1 kelas daun sehat. Penelitian dilakukan menggunakan platform Google Colab dengan GPU T4. Tahapan penelitian meliputi preprocessing dataset, augmentasi dataset, pembagian data train-validation-test, pembangunan model CNN berbasis EfficientNetB0, pelatihan model dengan mekanisme fine-tuning, serta evaluasi performa menggunakan confusion matrix, precision, recall, dan F1-score. Konfigurasi menggunakan input size 224 × 224 pixel, batch size 32, learning rate awal 0,001 dan maksimal 50 epoch. Hasil menunjukkan bahwa seluruh penyelesaian 50 epoch dengan training accuracy terbaik adalah 99,63% dan validation accuracy terbaik adalah 87,27% yang dicapai pada epoch ke-49. Model terbaik di-restore dari epoch ke-49 berdasarkan nilai val accuracy tertinggi. Kelas Powdery Mildew, Target Spot, dan Tomato Yellow Leaf Curl Virus memperoleh nilai recall tertinggi. Implementasi EfficientNetB0 terbukti efektif dalam melakukan klasifikasi penyakit daun tomat sehingga dapat untuk diterapkan pada sistem pertanian cerdas berbasis mobile maupun web.
Why it matches plant phenotyping methodsトマト葉の画像から病害状態を推定するCNN分類手法の開発・性能評価が研究の中心であり、植物表現型（病害状態）の画像ベース推定に該当する。
abstractmengembangkan sistem klasifikasi penyakit pada daun tomat menggunakan metode Deep Learning dengan arsitektur Convolutional Neural Network (CNN) berbasis arsitektur model EfficientNetB0
The rapid proliferation of plant diseases due to climate change and scarcity of manpower calls for intelligent, automatic and efficient diagnostic systems that can aid in real-time decision making in agriculture. Image based data mining and machine learning have been found to be quite effective in solving such problems; however, the traditional feature selection methods fail to meet the requirements due to the difficulties with high-dimensional leaf images, redundant features and poor generalization across different kinds of crops and diseases. This paper introduces a Hybrid Metaheuristic Feature Selection Framework which uses a combination of several optimization techniques in a cooperative manner for enhancing the efficiency, stability and classification accuracy of plant leaf diseases. The hybridization of GA-PSO approaches, γ-ABC, Bat algorithm, Firefly-DE, PSO Stability, AFSO-SVM, FOA, Binary ALO, Binary WOA, and GWO are chosen to form this framework on the basis of previous research in this field and it makes use of the advantages of both global and local searches in identifying small and informative feature subsets despite the shortcomings such as slow convergence, parameter sensitivity and local optima issues.It is the intention of the hybrid model described herein to seamlessly integrate with the deep learning-based method of feature extraction, thus providing excellent results even in noisy and highly variable agricultural environments. Literature shows that hybrid metaheuristic models have proven superior to single algorithms in terms of accuracy, precision, recall, and computational time. Leveraging from this insight, the current research proposes the development of an integrated and scalable hybrid feature selection model, with an eye to enhancing the predictive power of plant diseases.
Why it matches plant phenotyping methods葉画像から植物病害を推定する特徴選択フレームワークの開発が研究の中心であり、植物の病害状態を直接評価する計算的フェノタイピング手法に該当する。
abstractThis paper introduces a Hybrid Metaheuristic Feature Selection Framework
Classifying visually proximate categories remains a difficult problem in image analysis because inter-class differences are often small, whereas intra-class variability is substantial. The aim of the study was to evaluate how the adaptation regime of a pretrained neural network affects performance in a high-complexity recognition task under a fixed architecture and identical experimental conditions. The working hypothesis assumed that partial fine-tuning of the upper layers of a pretrained convolutional neural network would outperform a regime in which the convolutional backbone remains frozen and only the final classification block is trained. The open PlantVillage dataset, containing 54,303 images and 38 classes, was used as a standardized benchmark; its subject domain was treated as a convenient testbed for complex classification of visually similar states. MobileNetV3Small served as the base model. Two adaptation regimes were compared: a frozen convolutional backbone and partial fine-tuning of the upper part of the feature extractor. The main gain was achieved with partial fine-tuning: validation accuracy increased from 0.9707 to 0.9816, while validation loss decreased from 0.0929 to 0.0576. Class-wise analysis on the independent test split showed that the F1-score exceeded 0.95 for 33 of 38 classes, whereas the lowest values, 0.8889 and 0.9078, were observed in groups with high visual similarity. The scientific novelty does not lie in the general idea of partial fine-tuning of a pretrained convolutional network, since this approach is widely used in computer vision, but in the controlled experimental comparison of two MobileNetV3Small adaptation regimes under identical conditions on the PlantVillage dataset. The results show that, for the selected architecture, fixed data split, and visually proximate class classification task, partial fine-tuning of the upper part of the feature extractor improves recognition quality and produces an interpretable error structure.
Why it matches plant phenotyping methodsPlantVillage画像を対象に、植物の視覚的状態を分類するCNNの適応方式を統制条件下で比較・検証しており、画像ベースの植物状態推定手法が研究の中心である。
abstractThe open PlantVillage dataset, containing 54,303 images and 38 classes, was used as a standardized benchmark; its subject domain was treated as a convenient testbed for complex classification of visually similar states.
The research trains and evaluates multiple CNN architectures, including Basic CNN, AlexNet, VGG16, and EfficientNet B0, to enhance the accuracy of plant disease identification. Each model was tested using the New Plant Diseases Dataset from Kaggle, which includes various plant species and diseases, in order to assess performance, accuracy, and efficiency. The trained models were subsequently integrated into a Marathi language chatbot to facilitate real-time disease detection and provide agricultural guidance. This study provides valuable insights into the strengths and limitations of different models for precision agriculture, especially in applications that support regional languages to encourage accessible and sustainable farming practices. Additionally, a Marathi language chatbot is incorporated, enabling users to obtain plant disease information instantly through a user-friendly web application
Why it matches plant phenotyping methods植物病害状態を画像から識別するCNN群を訓練・評価し、リアルタイム検出システムへ統合しており、病害フェノタイプの取得・推定手法が中心である。
abstractThe research trains and evaluates multiple CNN architectures, including Basic CNN, AlexNet, VGG16, and EfficientNet B0, to enhance the accuracy of plant disease identification.
Reproduction assets foundThe paper's plant-phenotyping input is the public New Plant Diseases Dataset from Kaggle (healthy/diseased leaf images of tomato, potato, corn) used to train and evaluate the CNN ensemble. No author analysis code, trained model checkpoints, or supplementary data deposit is mentioned with an availability statement orURLDataset · publicInitially, the dataset was collected from the New Plant Diseases Dataset available
on Kaggle, which contains images of healthy and diseased plant leaves from various crops such as tomato, potato, and corn.Open asset ↗Kaggle · New Plant Diseases Datasetpdf-raw-page:3 lines:1-44Plant phenotyping relevance match · UnverifiedCrossref · checked 14 Sept 2026
Published30 Jun 2026International Journal for Research in Applied Science and Engineering TechnologyCited by 0 · OpenAlex ↗
Agriculture in India is challenged due to inappropriate crop selection, climate change, soil nutrient imbalance, and late identification of plant diseases. To overcome these problems, this paper proposes SmartAgriGo, an Explainable Artificial Intelligence (XAI)-based smart agriculture framework for transparent crop recommendation and automated plant dis-ease identification. The proposed framework combines machine learning, and explainable AI for accurate and interpretable agricultural decision support. Crop recommendation is done based on soil nutrients, pH, temperature, humidity and rainfall, where XLNet-based feature extraction and Support Vector Machine (SVM) classification identify the best-suited crop. Plant disease identification is done based on Convolutional Neural Network (CNN) and Softmax classification of leaf images. To improve interpretability, SHAP values are used for crop recommendation, and LIME values are used for disease identification.The interface designed for farmers shows the prediction results with confidence and explanation. SmartAgriGo fills the gap between state-of-the-art AI approaches and real-world agriculture by providing accurate, interpretable, and data-driven agricultural support.
Why it matches plant phenotyping methods葉画像からCNNで植物病害を自動識別する手法が、農業支援フレームワークの主要構成として明示されており、植物の病害状態を画像から推定する中央的な方法貢献がある。
abstractThe proposed framework combines machine learning, and explainable AI for accurate and interpretable agricultural decision support.
Plant phenotyping relevance match · UnverifiedCrossref · Europe PMC · checked 5 Sept 2026
Crop diseases pose a serious threat to agricultural yield and global food security. Accurate detection using Unmanned Aerial Vehicle (UAV) remote sensing imagery is of great significance for precision agriculture. However, this task remains challenging due to complex field backgrounds, diverse spectral-spatial characteristics of diseased leaf regions, irregular lesion boundaries, and variable texture patterns. To address these issues, this paper proposes a Task-Driven Attention VM-UNet (TDAVM-UNet), a novel deep learning model for crop disease detection from UAV imagery. The model integrates two task-driven attention modules: (1) Disease-Aware Dynamic Attention (DADA), which enhances the representation of diseased regions through disease feature enhancement, multi-scale dynamic channel attention, and texture-guided spatial attention; and (2) Channel-Spatial Visual State Space (CSVSS), which enables efficient long-range dependency modeling and local-global feature fusion while maintaining linear computational complexity. A hybrid loss strategy combining binary cross-entropy (BCE) loss, Dice loss, and cross-entropy (CE) loss with optimized coefficients is employed to address class imbalance and boundary delineation challenges. Extensive experiments are conducted on a self-constructed UAV crop disease unified mix dataset, comprising soybean disease images from Maharashtra, India, and rust disease images from wheat, corn, and other crops in Yangling, China, totaling 6,680 raw collected images, which after deduplication yields 5,000 images for experimentation. The results demonstrate that TDAVM-UNet achieves 26.87M parameters and 31.45 GFLOPs for 256×256 inputs, maintaining O(N) linear complexity (80% lower than TransUNet’s 156.78 GFLOPs), with 82.22% mIoU. This work provides a high-accuracy, robust, and computationally efficient method for UAV-based crop disease detection, offering significant technical support for precision agriculture applications.
Why it matches plant phenotyping methodsUAV画像から作物病害の病変領域・病害状態を推定する深層学習モデルを開発し、データセット上で性能評価しており、植物表現型取得・抽出手法が研究の中心である。
abstractthis paper proposes a Task-Driven Attention VM-UNet (TDAVM-UNet), a novel deep learning model for crop disease detection from UAV imagery.
Abstract Maize and cassava are staple crops in Nigeria, but their productivity is limited by viral and fungal diseases. This study created a mobile system based on lightweight CNN for smartphone portable real-time detection of cassava and maize diseases. In the 2025 planting season, 10,800 leaf images were gathered from a 10-acre experimental farm in Araromi Area, Bakatari Farm, Ido Local Government, Ibadan that cut across the seven classes of healthy cassava (1,620, 15%), cassava mosaic disease (1,540, 14.3%), cassava brown streak disease (1,410, 13.1%), healthy maize (1,880, 17.4%), maize leaf blight (1,540, 14.3%), maize rust (1,360, 12.6%) and maize streak virus (1,450, 13.4%). In order to make the dataset more diverse, data augmentation was done in the form of rotation by +/-30°, flipping, brightness by +/-20% and random cropping in the range of 80-100%. Lightweight CNN architectures MobileNetV2, EfficientNet-Lite, ShuffleNet, and custom CNN were trained in an 80:20 ratio for train and test. Out of 11 models tested, EfficientNet-Lite model forecast the highest where it achieved an accuracy of 94.6%, precision of 0.95, recall of 0.94, F1-score of 0.94, and an ROC-AUC of 0.97. As for MobileNetV2, it achieved an accuracy of 93.8% while ShuffleNet was estimated to achieve the fastest mobile inference at 65 ms. As for the class-wise analysis, it can be seen that the maize leaf blight (95.2%) and cassava mosaic disease (94.1%) had the most accurate predictions. The offline prediction from mobile deployment showed that EfficientNet-Lite occupied 92 ms and 135 MB. The findings show that low-cost and practical smartphone-based disease diagnosis requires the use of lightweight CNN models that can deliver accuracy and alertness that can allow farmers to manage the crop and food security on their own. Smallholder farmers in a resource-poor rural environment will be able to benefit from these models.
Why it matches plant phenotyping methods植物葉画像から病害状態を推定するCNNベースのモバイル画像解析手法を開発・比較・実装しており、植物状態の取得と技術性能評価が研究の中心である。
abstractThis study created a mobile system based on lightweight CNN for smartphone portable real-time detection of cassava and maize diseases.
Paddy leaf disease (PLD) detection has grown more difficult, yet early detection might prevent significant losses due to decreased crop yield. However, existing models struggle to accurately classify diseases under difficult circumstances like intricate backgrounds, fluctuating lighting, and overlapping leaves. Additionally, existing models do not incorporate efficient optimization strategies, leading to suboptimal accuracy and poor generalization on unseen data. To address these challenges, a novel deep learning-based YOLO-LEAFNET method for PLD detection utilizing IGT-YOLO, integrating the YOLOv8 disease detection with the Improved Gorilla Troops (IGT) optimization. The input paddy leaf images are pre-processed using Bilateral Contrast Limited Adaptive Histogram Equalization (B-CLAHE) to enhance image quality and improve local contrast while preserving disease boundaries. YOLOv8 model is utilized to detect and classify paddy leaf diseases by accurately localizing affected regions with bounding boxes. Then, the IGT algorithm boosts the disease detection accuracy by optimizing YOLOv8 through effective hyperparameter tuning. The proposed YOLO-LEAFNET method effectiveness was evaluated using recall, F1 score, specificity, accuracy, and precision. B-CLAHE enhanced noise-free images improve contrast and detection accuracy, while the IGT-YOLO model ensures scalable, efficient early diagnosis of paddy leaf diseases with 99.07% accuracy. The YOLO-LEAFNET enhanced the total accuracy by 3.21%, 5.25%, and 1.98% related to CNN, DeepRice, and FasterR-CNN, respectively.
Why it matches plant phenotyping methodsイネ葉の病害状態を画像から検出・分類するYOLOベース手法を提案し、前処理・最適化・性能評価を中心に扱っているため、植物フェノタイピング手法として該当する。
abstractTo address these challenges, a novel deep learning-based YOLO-LEAFNET method for PLD detection utilizing IGT-YOLO, integrating the YOLOv8 disease detection with the Improved Gorilla Troops (IGT) optimization.
Reproduction assets foundThe paper's phenotyping input is the public UCI Rice Leaf Diseases dataset (paddy leaf images of bacterial leaf blight, leaf smut, brown spot), also mirrored on Kaggle. No author analysis code, trained model, or supplementary assets are disclosed.Dataset · publicThe dataset is publicly available
at: https://archive.ics.uci.edu/dataset/486/rice+leaf+diseases. The dataset is distributed
under the Creative Commons Attribution 4.0 (CC BY 4.0) license.Open asset ↗rice+leaf+diseasespdf-page:7 lines:1-33Plant phenotyping relevance match · UnverifiedEurope PMC · checked 15 Sept 2026
Grapevine downy mildew (GDM), caused by Plasmopara viticola, is managed largely through repeated fungicide applications, yet evaluating spray-program performance is difficult because field infections are spatially heterogeneous. However, host physiological changes can precede visible symptom development. We tested whether standardized, high-throughput VNIR hyperspectral imaging of field-grown grapevine leaf discs can capture early optical changes associated with infection and discriminate program-linked mitigation. Leaves were collected from a 2025 vineyard trial in Geneva, NY (cv. La Crescent) managed under three spray programs (conventional fungicides, biofungicides, and untreated control). Leaf discs (≈87 per program) were excised, inoculated with P. viticola, and imaged at 0.5, 1.5, and 3.5 days post inoculation (dpi) using a custom built, automated, hyperspectral imaging microscopy platform (400-980 nm). No visible sporulation occurred at 0.5 or 1.5 dpi; sporulation was first observed at 3.5 dpi and occurred only in the untreated control, whereas no discs from either treated program sporulated. Multivariate spectral analyses showed significant separation by spray program and dpi, and disease-related spectral indices exhibited program-dependent trajectories, with treated discs showing attenuated optical change relative to the control. A random-forest classifier trained on pre-sporulation spectra (0.5 and 1.5 dpi; N = 169) predicted subsequent sporulation with 0.78 accuracy and 0.77 ROC-AUC (95% CI 0.68-0.85), highlighting informative bands across visible, red-edge, and near-infrared regions. Together, these results support outcome-linked, replicate-rich hyperspectral phenotyping of vineyard spray programs using field-derived material under standardized acquisition conditions.
Why it matches plant phenotyping methods自動化VNIRハイパースペクトル撮像で、発病前のブドウ葉の光学的変化と将来の胞子形成を推定する手法を中心に検証しており、植物病害状態の表現型取得・分類に該当する。
abstractWe tested whether standardized, high-throughput VNIR hyperspectral imaging of field-grown grapevine leaf discs can capture early optical changes associated with infection and discriminate program-linked mitigation.
Against the backdrop of the rapid development of smart agriculture, pest and disease monitoring and crop growth assessment for large-scale farmlands are of substantial importance for precision management and risk early warning. However, traditional unimodal visual methods are highly susceptible to illumination variation, canopy occlusion, scale differences, and background interference in real field environments, and thus fail to make full use of environmental sensing information and spatial priors. To address these issues, a multimodal target perception framework for intelligent farmland inspection is proposed in this study. By jointly integrating UAV imagery, time-series data from ground Internet of Things sensors, and spatial positional information, joint modeling of pest and disease recognition and crop growth assessment is achieved through cross-modal alignment and collaborative encoding, multi-scale target perception, and dynamic multimodal fusion and decision-making. Experimental results demonstrate that, in the pest and disease recognition task, the proposed method achieved a Precision of 91.63%, a Recall of 90.27%, an F1-score of 90.94%, and an mAP of 93.15%, significantly outperforming comparison models such as Faster R-CNN with ResNet50 backbone, YOLOv8-m, Swin Transformer-Tiny, and Multimodal Transformer. In the crop growth assessment task, an Accuracy of 89.96%, a Precision of 89.11%, a Recall of 88.74%, and a Macro-F1 of 88.92% were achieved, again clearly exceeding those of ResNet50, EfficientNet-B3, ViT-B/16, and conventional multimodal fusion models. The ablation study further verified the effectiveness of the cross-modal alignment module, the multi-scale target perception module, and the dynamic fusion module, with the complete model reaching 90.94%, 93.15%, and 88.92% in Pest F1, Pest mAP, and Growth Macro-F1, respectively. Furthermore, the net economic return regression experiment at the unit-area level further demonstrates that the proposed method can effectively connect state information with economic outcomes, showing strong application potential in return prediction, performance evaluation, and resource allocation optimization. These findings indicate that the proposed method can effectively improve perception accuracy and robustness in complex farmland environments, thereby providing reliable technical support for intelligent inspection, pest and disease early warning, and precision management in agricultural scenarios.
Why it matches plant phenotyping methodsUAV画像、IoT時系列データ、空間情報を統合したマルチモーダル手法を開発し、作物生育状態の評価を技術的に検証している。害虫認識単独ではなく、植物の生育評価を含む取得・推定手法が中心である。
abstracta multimodal target perception framework for intelligent farmland inspection is proposed in this study.
Traditional visual inspection is replaced by plant disease detection (PDD), which integrates plant pathology, image processing, remote sensing, agronomy and machine learning. Remote sensing tools and high-resolution drone imagery enhance real-time disease monitoring. However, challenges like data scarcity and algorithm generalization make accurate and automated disease diagnosis more complex. In this manuscript, Improved Agricultural Monitoring through Automated Detection and Classification of Purple Blotch and Yellow Blotch Diseases on Onion Leaves utilizing Dual Branch Graph Neural Network (ADC-PBYBD-OL-DBGNN) is proposed. The onion leaf dataset was first collected in the Karnataka village of Chilwadigi, which has a variety of climates. Then the collected images are preprocessed using Distributed Adaptive Spatial Filtering (DASF) is used for resizing and cropping. The preprocessed images are fed to Onion Leaf Disease Detection utilizing Dual Branch Graph Neural Network (DBGNN) for detecting and classifying as Healthy, Iris Yellow Virus, Purple Blotch and Leaf Blight. DBGNN generally doesn't show any adaptation of optimization techniques for figuring out the best parameters to guarantee precise onion leaf detection. Hence, Superb Fairy-wren Optimization Algorithm (SFOA) is utilized to optimize DGRGNN for precisely classifying the onion leaves. Then the proposed ADC-PBYBD-OL-DBGNN is implemented and the performance metrics like Accuracy, Precision, Recall, F1 score, Computational time are analyzed. Finally, the performance of proposed ADC-PBYBD-OL-DBGNN method provides 26.68%, 25.75%, and 26.16% higher accuracy and 27.49%, 24.75%, and 25.85% higher precision while compared with existing methods such as the onion plant leaf image dataset for classification and detection (OPLM-CD-Xpection), the onion and maize image datasets for creating AI-based classification models for pests and diseases (OMI-PD-CNN) and the meta-learning based neural architecture search for automated generation of deep neural networks for plant disease detection tasks (SAG-PDD-DNN) correspondingly.
Why it matches plant phenotyping methodsタマネギ葉の画像から病害状態を検出・分類する画像ベースの植物フェノタイピング手法を提案し、性能比較まで行っており、方法開発が中心である。
Vision-based crop disease diagnosis plays a pivotal role in smart agriculture, yet challenges such as complex field backgrounds, high intra-class similarity of lesion morphology, and severe data imbalance continue to impede model stability and interpretability. To address these issues, this study proposes DAPR-AM-Net, an intelligent diagnostic framework for tomato leaf diseases that integrates dual-attention progressive refinement with adaptive MixUp. The method introduces four key innovations: (1) a Dual Attention Fusion Mechanism (DAFM) that jointly leverages channel-wise and spatial attention to enhance lesion-related texture, color, and structural cues while suppressing background noise via the CBAM module, thereby directing the network's focus toward pathogenic regions; (2) an Adaptive MixUp with Attention-Aware Sampling (AMAAS) module that dynamically adjusts sample mixing ratios according to attention maps, effectively improving discrimination in complex boundary areas; (3) a Progressive Feature Refinement with Dual Attention (PFR-DA) module that incrementally optimizes deep feature representations through cross-hierarchical information flows; and (4) an Imbalance-Aware Multi-Objective Optimization (IAMOO) strategy that adaptively modulates loss weights based on category distribution to strengthen recognition of minority disease classes. On our self-constructed Tomato-DD dataset, DAPR-AM-Net achieves superior performance across all major metrics-including an accuracy of 99.73%, precision of 99.73%, recall of 99.74%, and an F1-score of 99.73%-outperforming current state-of-the-art approaches. On the full Plant-Village dataset, the model achieves 99.85% accuracy, 99.78% precision, 99.84% recall, and a 99.81% F1-score, while maintaining a compact model size of only 4.72 M parameters. Multi-level interpretability analyses corroborate the transparency and reliability of the model's inference process. Additionally, we developed an end-to-end smart agriculture platform powered by DAPR-AM-Net. Overall, DAPR-AM-Net provides a forward-looking yet practical solution for high-accuracy and strongly interpretable disease diagnosis in smart agriculture scenarios, demonstrating both methodological innovation and real-world applicability.
Why it matches plant phenotyping methodsトマト葉の病害状態を画像から分類する新規深層学習手法を開発し、複数データセットで性能評価するとともに、エンドツーエンドの診断プラットフォームを構築しているため、植物表現型取得・抽出法が中心である。
abstractthis study proposes DAPR-AM-Net, an intelligent diagnostic framework for tomato leaf diseases
Abstract Tomato cultivation represents a critical component of nutrition, economic development, and public health, yet it is increasingly compromised by foliar diseases that diminish yield and intensify dependency on hazardous agrochemicals. Although deep learning models have demonstrated strong capabilities for automated disease recognition, existing benchmark datasets exhibit limited real-world utility, primarily due to the absence of in-field imagery and precise annotations of diseased regions. A novel attention mechanism, I nverted R esidual C onvolutional B lock A ttention M odule ( IR-CBAM ), is proposed, combining inverted residual blocks with the CBAM Module, and is specifically tailored to address challenges posed by in-field image variability, such as complex backgrounds and inconsistent lighting. Furthermore, this study introduces SLIF-Tomato , the S ri L ankan I n- F ield Tomato leaf disease dataset, which is the first complete in-field dataset comprising class labels and bounding box annotations collected under diverse real-world conditions. The proposed approach achieved 99.66% and 99.91% accuracy rates on two curated versions of the SLIF-Tomato dataset. Subsequently, the YOLOv12-large model is employed to detect diseased regions, which obtained an average precision score of 88.5%. These contributions advance the development of accurate, efficient and field-adaptable diagnostic systems for tomato leaf disease management in precision agriculture.
Why it matches plant phenotyping methodsトマト葉の病害領域を画像から検出・認識する手法を開発し、実圃場データセットも構築・評価しており、植物病害状態の表現型取得が中心的です。
abstractA novel attention mechanism, I nverted R esidual C onvolutional B lock A ttention M odule ( IR-CBAM ), is proposed, combining inverted residual blocks with the CBAM Module, and is specifically tailored to address challenges posed by in-field image variability, such as complex backgrounds and inconsistent lighting.
In cotton disease detection, the complex farmland environment and the varying scales of disease spots, especially the presence of small-target disease spots, limit the detection accuracy of lightweight models. To address this issue, an improved YOLOv11n detection algorithm is proposed. First, the backbone network is reconstructed using the GhostConv (G-conv) module, which generates redundant feature maps through linear operations, thereby reducing computational complexity. Second, an Adaptive Calibration and Feature Fusion Architecture Head (ACFFA) with prior calibration and cross-scale fusion capabilities is constructed in the detection stage to handle the problem of varying disease spot scales. Furthermore, the Adaptive Scale-aware Wise Intersection over Union (AS-WIoU) loss function, improved from WIoUv3, is introduced to enhance the stability of bounding box regression and improve detection accuracy for low-resolution, small-target lesions. Experimental results show that on the cotton disease dataset constructed based on the Mendeley Data database, the proposed model achieves mAP 50 and mAP 50-95 of 90.30% and 73.84%, respectively, with precision and recall of 92.33% and 87.68%, and a parameter count of 3.81 M. The algorithm significantly improves detection accuracy while maintaining efficient inference, making it suitable for real-time monitoring tasks on agricultural embedded terminals.
Why it matches plant phenotyping methods綿花葉の病斑を画像から検出・定量する改良YOLO手法が研究の中心であり、植物の病害状態を直接推定する画像ベースのフェノタイピングに該当する。
abstractan improved YOLOv11n detection algorithm is proposed
In modern agriculture, artificial intelligence (AI) is doing excellent work in crop monitoring, crop disease detection, crop yield prediction, and crop stress assessment. Various techniques such as deep learning, generative models, vision transformers, explainable AI (XAI), multimodal fusion, etc., have helped in building intelligent crop analysis. This paper provides the comparative crop analysis of various crop species, data modes, and environmental conditions for the review of benchmark studies for the current framework, experimental methodologies, and datasets. The important challenges and open issues identified are limited field datasets, class imbalance, dataset bias, high computational complexity, privacy concerns, etc. Based on these, we suggested future work that can include foundation models, digital twin techniques, federated learning, multimodal frameworks, and interpretability architecture. This review provides a review for creating reliable, scalable, and sustainable AI-driven crop analysis systems. In addition to that, the survey seeks to give researchers and AI practitioners a comprehensive analysis of the current situation.
Why it matches plant phenotyping methods作物の病害・収量・ストレス評価を対象に、AI手法、データモード、ベンチマーク、実験方法、データセットを体系的にレビューしており、植物表現型取得・推定手法のレビューが中心です。
abstractThis paper provides the comparative crop analysis of various crop species, data modes, and environmental conditions for the review of benchmark studies for the current framework, experimental methodologies, and datasets.
This paper presents a deep learning model to detect cotton plant pests and classify diseases, which must overcome limited datasets, class imbalance, and feature redundancy. At the preprocessing phase, the Gaussian blur filtering and Contrast Limited Adaptive Histogram Equalization (CLAHE) are used to sharpen images by improving their clarity and contrast. To increase and diversify the data, Spa-GAN-based data augmentation is used to produce realistic synthetic samples. To obtain an accurate Region of Interest (RoI), an Attention-Guided Multi-Scale Residual U-Net (AGMS-U-Net) is considered to segment local and global structural information. The proposed framework makes three major contributions: (i) a new attention-based feature extractor, TriAttnNet, that incorporates spatial, channel, and contextual attention to represent diseases on a fine-grained level (ii) a new optimization strategy, Hybrid Mongoose Ray Chaotic Optimization (HMRCO), which includes chaotic strategies to better tune the parameters and explore the feature space and (iii) classification layer with focal loss for final decision. Experimental analyses prove that the suggested method is much more effective than the current state-of-the-art models, providing a powerful and understandable solution to precision agriculture and sustainable cotton crop health monitoring. Experimental results show that TriAttnNet achieves 98.66% accuracy, 98.71% recall, and 98.81% F1-score, which is better than the state-of-the-art algorithms, such as EfficientNetB1-CBAM (96.38%) and BERT-ResNet-PSO (95.69%). The proposed system is computationally feasible and interpretable, and it is interpretable to provide a practical solution to precision agriculture and sustainable monitoring of the health of cotton crops.
Why it matches plant phenotyping methods綿花植物の画像から病害を分類する深層学習手法を開発・評価しており、植物の病害状態を直接推定する方法が研究の中心である。
abstractThis paper presents a deep learning model to detect cotton plant pests and classify diseases
Reproduction assets foundThe paper's plant-phenotyping input is the public Kaggle Cotton Plant Disease Dataset (Dhamodharan R), explicitly cited as the study's data source with a matching public URL. The authors' model/code is not publicly deposited (available only upon request), so no qualifying code asset exists.Dataset · publicThe dataset of this study is taken from the publicly available Kaggle repository, Cotton Plant Disease Dataset 43Open asset ↗Kagglelines:48-58Plant phenotyping relevance match · UnverifiedCrossref · checked 15 Sept 2026
Plant diseases have a significant effect on both the amount and quality of agricultural output. The majority of these illnesses have obvious symptoms, and visual examination of the afflicted leaves is the accepted technique for diagnosing plant leaf diseases. New diseases keep emerging as plant structures and agricultural methods change. To prevent the spread of illness and guarantee the healthy growth of crops, these diseases must be identified and classified as soon as possible. Thus, a novel Parallel Convolutional Bidirectional gated recurrent-based framework for Plant Leaf Disease and Severity Classification (PCB-PLDSC) is proposed in this research. In order to balance the dataset by producing more examples for underrepresented classes, image augmentation is done after bilateral filtering for noise reduction. Moreover, sick regions are isolated using a parallel attention-based U-Net (PA-U-Net) model. Adaptive threshold-based local gradient increasing pattern (AT-LGIP), color characteristics, and median binary pattern (MBP) are used to extract features such as texture, color, and spatial patterns. These are categorized using a hybrid parallel convolutional bidirectional gated recurrent (PCB) model, which integrates a bidirectional gated recurrent units (Bi-GRU) model for disease classification with the multi-residual and layer perceptron-based channel attention parallel convolutional neural networks (MRL-CPCNN) model. The impact of each attribute on predictions is shown during the classification phase by SHapley Additive exPlanations (SHAP)-based explainable artificial intelligence (AI). Finally, for detected diseases, the system estimates severity as mild, moderate, or severe to guide effective crop management.
Why it matches plant phenotyping methods植物葉の病害領域を画像から分離し、病害分類と重症度を推定する画像ベースの表現型解析手法が研究の中心であるため。
abstracta novel Parallel Convolutional Bidirectional gated recurrent-based framework for Plant Leaf Disease and Severity Classification (PCB-PLDSC) is proposed in this research.
Plant phenotyping relevance match · UnverifiedCrossref · Europe PMC · checked 5 Sept 2026
Field / plotCountingObject detectionStress / disease detectionDisease symptoms / severity
This paper targets the practical needs of plant disease and pest object detection and counting in complex field environments and proposes a lightweight improved framework based on YOLOv10. A MEMBA-F multi-scale feature enhancement module is introduced on the Neck to strengthen representations of small targets and weak-texture lesions, and a CSCAF cross-scale context-aware fusion module is designed to adaptively align high-level semantics with low-level details via cross-scale attention and gated selection, suppress background interference, and improve localization stability. The proposed method is systematically compared with two-stage detectors, YOLO-series models, and Transformer-based detectors on three public datasets, and is further investigated through ablation studies, confusion matrix analysis, and Grad-CAM interpretability analysis. In addition, a density-binned counting evaluation is conducted to validate robustness from sparse to dense scenarios. Experimental results demonstrate that the proposed method achieves superior performance in Precision, Recall, mAP@50, and mAP@50-95, and significantly reduces counting errors in dense scenes under deployable inference cost, providing reliable support for precision plant protection monitoring and decision making.
Why it matches plant phenotyping methods植物病害の病変と害虫を画像から検出・計数するYOLOv10改良法を開発し、複数データセット、比較実験、アブレーション、密度別評価で性能検証しており、植物の病害状態の取得方法が中心である。
abstractThis paper targets the practical needs of plant disease and pest object detection and counting in complex field environments and proposes a lightweight improved framework based on YOLOv10.
Plant phenotyping relevance match · UnverifiedCrossref · Europe PMC · checked 5 Sept 2026
Precise plant disease segmentation in real-world agricultural environments presents challenges that general-purpose models often fail to address, primarily due to the anisotropic spread of lesions, blurred biological boundaries, and severe background dominance. To overcome these bottlenecks, this paper proposes PlantFormer, an end-to-end network that effectively integrates and adapts advanced architectural components to address these domain-specific issues. Specifically, PlantFormer employs an InteractSwin Backbone with a Cross-Level Fusion (CLF) module to preserve early pathological details. To model highly directional disease propagation, a GlobalAnisotropic Context Aggregation (GACA) neck utilizing strip pooling is introduced. Furthermore, a Semantic-Guided Fusion (SGF) decoder acts as a feature “boundary purifier” to suppress field noise, while a decoupled boundary-aware loss function explicitly shifts the optimization focus from healthy leaf regions to subtle necrotic transition zones. Comprehensive experiments demonstrate the effectiveness of our approach: PlantFormer achieves 41.78% mIoU on the complex PlantSeg dataset (unstructured field conditions) and 93.54% mIoU on the structured NLB dataset (vein-aligned lesions). It outperforms generalist models such as DeepLabV3+ and Segformer in key metrics like mIoU and mAcc. Despite these promising results, limitations remain, particularly regarding performance in scenarios with high-density, early-stage disease outbreaks, which will be the focus of future work.
Why it matches plant phenotyping methods植物病斑・壊死領域を直接セグメンテーションする画像解析手法の開発とベンチマークであり、植物病害状態の定量化が中心である。
abstractPrecise plant disease segmentation in real-world agricultural environments presents challenges that general-purpose models often fail to address
Tomatoes are the most significant and widely consumed crops globally. Leaf diseases cause an important threat to crop production and quality. Further, various fungi, bacteria and viruses can influence the plant's various parts and gradually destroy the quality and production of tomatoes in an agricultural field, thus it impacts the surrounding cultivated plants to cause more economical loss to farmers. Therefore, various techniques are proposed recently to optimally recognize and categorize the epidemic pathogens. To enhance sustainable plant protection practices, accurate identification and classification of diseases is essential to enhance the production rates. Effective pathogen detection and monitoring of plant health are critical areas of research in agriculture. Understanding disease severity is a crucial role for management practices and preventing the spread of infections. Rapid assessment is crucial because early detection of disease can significantly enhance the crop yield and influence the management strategies implemented by farmers. In this proposed model, a deep learning approach is proposed to classify the severity of diseases in tomato plants. At first, the needed images are collected from publicly available resource. Further, the collected images are subjected to the Adaptive and Attention-based Mask Region Convolutional Neural Network (AA-MRCNN) for optimally segmenting the abnormal regions from the gathered image. Further, the hyperparameters, like epoch, steps per epoch, and hidden neuron count in the Adaptive and Attention-based Mask Region Convolutional Neural Network are tuned by the Fitness-based African Vultures Optimization (FAVO) algorithm. Also, the segmented images are passed into Multiscale Recurrent MobileNet (MRMNet) module for categorizing disease severity in the tomato plant epidemic. The assessment of the recommended severity detection approach of tomato plant disease is determined by conducting a simulation experiment. The proposed model attains better outcomes of 93% accuracy, 93% specificity, 93% precision, 7% False Negative Rate (FNR), 86% Matthews Correlation Coefficient (MCC), 93% Fowlkes mallow Index (FM), 86% Bookmaker Informedness (BM), and 86% Threat Score (TS) measures in the ReLu activation function, which is progressed than the conventional frameworks. The result defines that the suggested technique outperformed than other baseline models to ensure the dependability of the tomato plant epidemic pathogens detection performance.
Why it matches plant phenotyping methodsトマト葉画像から病変領域を分割し、植物病害の重症度を分類する画像ベースの表現型推定手法を開発・評価しており、方法が研究の中心である。
abstracta deep learning approach is proposed to classify the severity of diseases in tomato plants.
Reproduction assets foundThe paper uses a public Kaggle tomato leaf disease image dataset as its phenotyping input and states that the authors' source code is available in a public GitHub repository. Both are paper-specific, publicly accessible, and actionable.Code · publiche tomato disease classification performances were
carried out among the performance metrics like Prevalence Threshold
(PT), BM, Precision, FNR, Accuracy, FM, Specificity, MK (Markedness)
and TS to maximize the reliability of the designed approach. The source
code of the public repository on GitHub link is available on “GitHub-
https://github.com/pdeepika6078/Severity-Classification-of-Tomato-Plant-Epidemic-Pathogens-/tree/main”
In order to demonstrating the effectiveness of the designed approach,
several conventional segmentation, optimization, and classification
approaches are adopted to compare the overall process. The reason
behind selecting the traditional approaches to improve the clasOpen asset ↗pdeepika6078/Severity-Classification-of-Tomato-Plant-pdf-raw-page:55 lines:1-29Plant phenotyping relevance match · UnverifiedCrossref · checked 15 Sept 2026
Accurate crop damage detection is vital for sustaining agricultural productivity and ensuring food security, particularly within the scope of precision farming. Despite significant advancements in Deep Learning (DL), the classification of crop damage under diverse real-world conditions remains challenging due to heterogeneous damage patterns, variable crop types, and environmental inconsistencies. To overcome these challenges, a hybrid DL framework (i.e., EnCropNet) is proposed for binary crop damage classification using field-level RGB images. The proposed model integrates the global semantic representation power of DenseNet121 with a lightweight convolutional stream inspired by ShuffleNetV2, enhanced via Squeeze-and-Excitation (SE) blocks for improved channel-wise attention. The model was trained and evaluated on a balanced version of the publicly available CGIAR Crop Damage Classification (CDC) dataset. To enhance generalization, extensive augmentation techniques such as random rotations, brightness variations, and zoom transformations were applied. The proposed model outperformed leading baseline models, including LightCDC, DenseNet121, EfficientNetV2S, and ShuffleNetV2, achieving a notable test accuracy of 90.00%. Additionally, visualization tools such as GradCAM and t-SNE confirm EnCropNet ability to capture discriminative features while maintaining transparency. The results suggest that EnCropNet is an effective and scalable solution for real-time crop damage assessment, particularly in low-resource agricultural environments. Its deployment could support timely decision-making and contribute to sustainable farming practices.
Why it matches plant phenotyping methods圃場RGB画像から作物被害状態を推定する深層学習手法を開発し、公開データセットで性能比較・評価しており、植物フェノタイピング手法が中心です。
abstracta hybrid DL framework (i.e., EnCropNet) is proposed for binary crop damage classification using field-level RGB images.
This study addresses the need for efficient and accessible plant disease identification systems in the era of Agriculture 4.0, where advances in artificial intelligence (AI) and machine learning (ML) support data-driven agricultural practices. The increasing popularity of home gardening highlights challenges faced by users in identifying plant diseases due to limited knowledge and diagnostic tools. Therefore, this research aims to develop a web plant disease detection system using the Django framework and convolutional neural networks (CNNs). The model was trained on a controlled dataset consisting of 57,320 leaf images collected from the PlantVillage and Turmeric Plant Disease datasets. Image preprocessing was applied, including resizing, normalization, and data augmentation such as image rotation, zooming, image inversion and brightness adjustmen. Class imbalance during training was handled using class weighting. The dataset is divided into a training set and a validation set for model development and evaluation. The CNN model achieved an accuracy of 92% on the labeled validation dataset, with a mean F1 score of 0.79 and a weighted mean F1 score of 0.92. For generalization testing, an uncontrolled (wild) dataset consisting of 223 images collected from online sources was used, resulting in an accuracy of 11%, indicating limited real-world generalization due to domain differences. Despite this limitation, the proposed system demonstrates the feasibility of CNN-based plant disease classification in a web application.
Why it matches plant phenotyping methodsCNNによる葉画像からの植物病害識別システムを開発し、検証データと野外データで性能評価しているため、植物の病害状態を推定する画像ベースのフェノタイピング手法が中心である。
abstractthis research aims to develop a web plant disease detection system using the Django framework and convolutional neural networks (CNNs).
Reproduction assets foundThe paper's CNN plant-disease model was trained primarily on the public Kaggle 'New Plant Diseases Dataset' (PlantVillage-derived, 54,528 images), which is a paper-specific, publicly available image dataset directly used for the study's phenotyping measurements. The Turmeric Plant Disease Dataset (Mendeley DOI 10.17632Dataset · public[23] Samir Bhattarai, “New Plant Diseases Dataset,” San Francisco, CA, USA, 2018. Accessed: Jun. 16, 2025.
[Online]. Available: https://www.kaggle.com/datasets/vipoooool/new-plant-diseases-datasetOpen asset ↗Kaggle · vipoooool/new-plant-diseases-datasetpdf-page:15 lines:1-45Code / dataset availability confirmedEurope PMC · checked 5 Sept 2026
Global food security is largely based on the accurate and timely diagnosis of crop diseases, where paddy rice is an extremely essential staple of more than half of the world population. The conventional disease identification techniques tend to be laborious, time consuming and demand a great deal of domain knowledge, which becomes a bottleneck in the efficient management of the farms. Although deep learning [and especially Convolutional Neural Networks (CNNs)] have demonstrated a spectacular performance in automated classification of diseases based on leaf images, they tend to overlook important contextual features that are implicitly processed by agronomic experts. The visual defects of a disease might be unclear and this can greatly differ depending on factors like the genetic variety of the plant and the stage of development. We overcome this shortcoming by proposing a new multi-modal deep learning framework, Multi-Modal Factorized Bilinear Pooling (MFBP) model which is capable of a more holistic and precise paddy health measurement. The proposed method is the only one that combines high-level visual information obtained using leaf images and related tabular information, namely the paddy type and number of days. The MFBP model uses Factorized Bilinear Pooling (FBP) rather than the simple feature concatenation which commonly loses the complex relationship between different data types. This systematic method efficiently encodes all the complex interactions between all components of the visual and tabular features vectors in such a way that helps the model to pick up subtle, context-specific patterns. As an example, it will only be possible to educate the model that a specific visual blemish is predictive of a given disease through a specific species at a specific age. We test our model on the Paddy Doctor: Paddy Disease Classification dataset, which is a detailed public dataset comprising of more than 10,000 labeled images and containing relevant metadata, and thus it forms a perfect testing bed to conduct multi-modal research. Through our detailed experiments, we have shown that the proposed MFBP model is much better than a baseline model based on concatenation fusion, which proves that deep, multiplicative interactions can be best modeled in this task. The findings highlight the massive possibilities of multi-modes AI in the development of more robust, more accurate, and more context-aware diagnostic instruments and precision agriculture to enable more sustainable and productive agricultural activities.
Why it matches plant phenotyping methods葉画像とメタデータを統合してイネの健康状態・病害を推定する新規深層学習手法を提案し、ベースライン比較で検証しているため、植物フェノタイピング手法が中心である。
abstractWe overcome this shortcoming by proposing a new multi-modal deep learning framework, Multi-Modal Factorized Bilinear Pooling (MFBP) model which is capable of a more holistic and precise paddy health measurement.
Reproduction assets foundThe paper's phenotyping inputs are the public Kaggle 'Paddy Doctor: Paddy Disease Classification' dataset (10,407 leaf images with tabular metadata for variety and age), explicitly named in the Data Availability statement with a persistent public URL. No author analysis code, trained models, or checkpoints are reportedDataset · publicThe datasets used and/or analysed during the current study are publicly available in the
“Paddy-doctor: paddy disease classification” repository at the following persistent
URL: https://www.kaggle.com/datasets/vbookshelf/paddy-disease-classification.Open asset ↗Kaggle · vbookshelf/paddy-disease-classificationpdf-page:20 lines:1-74Plant phenotyping relevance match · UnverifiedCrossref · checked 14 Sept 2026
Cotton, a critical global cash crop, faces significant challenges in disease detection due to wetland conditions and climate-change inconsistency. This work presents a Cotton Crop Disease Detection Model that integrates an EfficientNet--Convolutional Neural Network (CNN) architecture with the Temporal Logic of Actions (TLA+) for formal verification. The proposed model ensures accurate disease classification while providing formal verification for correctness, reliability, and availability. The EfficientNet--CNN demonstrates robust performance in identifying multiple disease conditions, including aphids, armyworms, and bacterial blight, achieving an overall weighted accuracy of 94%, with macro-average scores of 0.94 for precision, recall, and F1-score. Class-specific performance shows an F1-score of 97% for armyworms and 96% for powdery mildew. The TLA+ formal verification validates the model's compliance with disease-monitoring requirements, ensuring correctness, reliability, and availability in real-world industrial applications. This integrated framework enhances cotton crop disease detection and supports sustainable, technology-driven agricultural practices.
Why it matches plant phenotyping methods綿花の病害状態を画像ベースのCNNで分類する手法を開発・検証しており、植物の状態推定が中心的な技術貢献である。
abstractThis work presents a Cotton Crop Disease Detection Model that integrates an EfficientNet--Convolutional Neural Network (CNN) architecture with the Temporal Logic of Actions (TLA+) for formal verification.
Image processing plays a vital role in precision agriculture by enabling automated disease detection and crop health monitoring. This research presents a novel Hybrid Vision Transformer with Dense Attention Capsule Network (HVT-DACapNet) model for accurate cotton plant disease detection. The proposed framework integrates Adaptive Wavelet Transform Filtering (AWTF) for noise removal while preserving disease-related features. A Hybrid Vision Transformer (HVT) is employed to extract both local spatial patterns and global contextual dependencies, and the Dense Attention Capsule Network (DACapNet) captures hierarchical spatial relationships with an attention mechanism that emphasizes infected regions. In addition, a hybrid optimization strategy combining Mayfly and Aquila Optimization (HMAO) is used to fine-tune model hyperparameters for improved convergence. The model is evaluated on a publicly available Kaggle cotton leaf disease dataset containing healthy leaves and multiple disease categories including Target Spot, Powdery Mildew, Bacterial Blight, Army Worm, and Aphids, using a 70:15:15 train-validation-test split under the simulation setup and hyperparameter configuration described in the manuscript. The proposed HVT-DACapNet achieves an F1-score of 99.68%, sensitivity of 99.68%, specificity of 98.89%, and an overall accuracy of 99.79%, outperforming existing models such as ConvLSTM-ZOA, GOA, SFO, Inception-V3, and VGG-16.
Why it matches plant phenotyping methods綿花葉の画像から病害状態を推定する深層学習手法を新規開発し、公開データセットで性能評価しているため、植物フェノタイピング手法が中心である。
abstractThis research presents a novel Hybrid Vision Transformer with Dense Attention Capsule Network (HVT-DACapNet) model for accurate cotton plant disease detection.
Reproduction assets foundThe paper's only qualifying asset is the public Kaggle Cotton Plant Disease Dataset used as the input image dataset for all experiments. The authors' code is explicitly not publicly available (institutional restrictions), with only a supplementary algorithm document and on-request implementation details.Dataset · publicthodological workflow of the proposed model. Additional
implementation details may be made available from the corresponding
author upon reasonable request for academic and non-commercial
research purposes.
Data Availability-The datasets generated and/or analysed during the
current study are available in the Kaggle repository,
https://www.kaggle.com/datasets/dhamur/cotton-plant-disease
Author’s contribution – G.Neelavathi– Research proposal –
construction of the workflow and model – Final Drafting– Survey of
Existing works – Improvisation of the proposed model;
Dr.K.Venkatasalam – Initial Drafting of the paper – Collection of
datasets and choice of their suitability – Formulation of pseudOpen asset ↗Kaggle · dhamur/cotton-plant-diseasepdf-raw-page:39 lines:1-42Code / dataset availability confirmedCrossref · Europe PMC · checked 5 Sept 2026
Crop leaf diseases cause 10–40% annual yield losses, yet timely field diagnosis remains difficult. Vision-language models (VLMs) lift recognition accuracy with rich textual descriptions, but multimodal pipelines are too slow for real-time field use because they require text processing at inference. We present MTL-AWL, a framework built on a training–inference asymmetry: VLM text serves as privileged training-time supervision, and two coupled mechanisms—one retaining VLM semantics in the image encoder and one exploiting them—enable image-only deployment at multimodal accuracy. A modal-dropout strategy (p=0.6) intermittently masks the VLM text sequence during training, forcing the image encoder to retain cross-modal representations independently. An adaptive multi-task loss jointly optimizes InfoNCE contrastive alignment, attention diversity, and modality consistency under learnable softmax weights, consistently converging to a dominant contrastive weight (55% on soybean, 68% on PlantDoc)—identifying cross-modal alignment as the primary mechanism of VLM knowledge transfer. At inference, the model reaches 818 FPS (3.7× faster than multimodal methods) at only 0.41% accuracy cost, attaining 99.30%/98.89% (multimodal/image-only) on soybean and 72.65%/68.80% on PlantDoc—compact enough for real-time, offline field screening.
Why it matches plant phenotyping methods葉画像から植物病害状態を推定する画像ベース手法を開発し、複数データセットで精度・速度を評価しており、フェノタイピング手法が中心である。
abstractWe present MTL-AWL, a framework built on a training–inference asymmetry: VLM text serves as privileged training-time supervision, and two coupled mechanisms—one retaining VLM semantics in the image encoder and one exploiting them—enable image-only deployment at multimodal accuracy.
Reproduction assets foundThe paper's Data Availability Statement links a public Dryad DOI for the soybean leaf disease image dataset used in the study's phenotyping/recognition experiments. No author code or model release is stated.Dataset · publicThe datasets utilized in this study are openly accessible. The soybean dataset is available at https://doi.org/10.5061/dryad.41ns1rnj3 .Open asset ↗Dryad · 10.5061/dryad.41ns1rnj3lines:441-459Plant phenotyping relevance match · UnverifiedOpenAlex · Crossref · checked 11 Sept 2026
Melon (Cucumis melo L.) is a globally significant horticultural crop, characterized by high nutritional value and substantial commercial status. However, frequent outbreaks of powdery mildew severely threaten its yield and fruit quality. Current early detection methods primarily focus on detached leaf assays, which often lack sufficient model generalization. This study proposes a temporal 3D multispectral point cloud reconstruction method for melon plants by integrating multispectral imaging with 3D reconstruction technology. An Artificial Neural Network (ANN) model for 3D spatial light field distribution was developed based on a hemispherical white reference to achieve precise reflectance calibration of the multispectral point clouds. Post-calibration, the coefficient of variation (CV) for the spectral reflectance of the hemispherical reference in 3D space was reduced to less than 2.4%. On this basis, an early classification model for melon powdery mildew was constructed using Partial Least Squares Discriminant Analysis (PLS-DA) based on the mean reflectance spectra of individual plant point clouds. The results demonstrate that the average recognition accuracy reaches 85.94% from 4 days post-inoculation onwards, enabling disease early warning three days in advance. This research provides critical theoretical support and technical reference for the non-destructive early monitoring and precision smart plant protection of crops in facility agriculture.
Why it matches plant phenotyping methodsメロン個体の病徴状態を対象に、時系列3Dマルチスペクトル点群の再構成・反射率校正と早期病害分類を開発しており、植物表現型取得手法が中心である。
abstractThis study proposes a temporal 3D multispectral point cloud reconstruction method for melon plants by integrating multispectral imaging with 3D reconstruction technology.
Plant leaf disease classification is essential in the agriculture industry, and recent advances in deep learning (DL) and machine learning (ML) have resulted in numerous approaches for detecting and classifying diseases using plant images. However, traditional diagnosis methods rely on human expertise and remain time-consuming and labor-intensive. To address this issue, the proposed system introduces a novel approach, Enhanced Hybrid Vision Transformer with Zero-shot learning classification (EHVZSC), for plant species identification. The method combines the strengths of Vision Transformers (ViT) and Zero-Shot Learning, enabling accurate classification of unseen classes without additional training data. The proposed approach leverages ViT to learn robust image representations, which are then used to generate a set of prototypes for zero-shot classification. Evaluated on the Plant Village dataset The model was trained with 50 epochs, a batch size of 32, and a learning rate of 0.0001 because these parameters provided stable convergence without overfitting, the proposed EHVZSC model achieves state-of-the-art performance with reduced data requirements, improving testing accuracy by up to 15 %, sensitivity by up to 10 %, specificity by up to 10 %, F1-score by up to 12 %, and ROC performance by up to 25 % over existing methods, while attaining 95.7 % accuracy, 97.8 % sensitivity, 95.0 % specificity, and a 96.45 % F1-score, demonstrating its superior ability to capture fine-grained disease features through attention-enhanced representation learning and robust zero-shot adaptability.
Why it matches plant phenotyping methods植物葉画像から病害状態を分類する新規Vision Transformer／ゼロショット手法の開発と性能評価が中心であり、植物病害フェノタイピング手法に該当する。
abstractthe proposed system introduces a novel approach, Enhanced Hybrid Vision Transformer with Zero-shot learning classification (EHVZSC), for plant species identification.
PHENET's Use Case 1 on plant health is validating sensors and imaging methods for the assessment of wheat ear diseases, with two AI-powered applications now reaching proof-of-concept stage. The first, FUSASEYD, addresses Fusarium Head Blight (FHB), a major fungal disease in winter wheat. Using RGB field images and a deep learning instance segmentation model (YOLOv11), the application detects and quantifies FHB symptoms on wheat ears, offering an automated alternative to time-consuming expert visual scoring. GEVES has developed both a PC interface and a smartphone application to visualise model predictions in the field. Validation in French registration trials is planned for the 2026 campaign. A companion article by V. Cadot et al. is currently under review in the Journal of Experimental Botany special issue on Plant Phenomics & Enviromics Across Scales. The second, COYL (Counting Orange and Yellow Larvae), tackles a practical challenge faced by breeders, and rapidly counting wheat blossom midge larvae, both Sitodiplosis mosellana and Contarinia tritici, to characterise variety susceptibility. Using smartphone RGB images and YOLOv-based object detection, the best-performing model achieved high accuracy and successfully distinguished between the two visually similar species. An online counting application has been developed, currently accessible to Walloon Agricultural Research Centre members. The labelled COYL-1 dataset is publicly available at https://doi.org/10.5281/zenodo.19402333 for community use. A companion article by Antoine Deryck et al. is under submission at Plant Phenomics Journal.
Why it matches plant phenotyping methodsRGB画像と深層学習によるコムギ穂の病徴検出・定量化を開発し、専門家評点の自動化とセンサー／画像法の検証を目的とするため、植物フェノタイピング手法が中心である。
abstractPHENET's Use Case 1 on plant health is validating sensors and imaging methods for the assessment of wheat ear diseases
PHENET's Use Case 1 on plant health is validating sensors and imaging methods for the assessment of wheat ear diseases, with two AI-powered applications now reaching proof-of-concept stage. The first, FUSASEYD, addresses Fusarium Head Blight (FHB), a major fungal disease in winter wheat. Using RGB field images and a deep learning instance segmentation model (YOLOv11), the application detects and quantifies FHB symptoms on wheat ears, offering an automated alternative to time-consuming expert visual scoring. GEVES has developed both a PC interface and a smartphone application to visualise model predictions in the field. Validation in French registration trials is planned for the 2026 campaign. A companion article by V. Cadot et al. is currently under review in the Journal of Experimental Botany special issue on Plant Phenomics & Enviromics Across Scales. The second, COYL (Counting Orange and Yellow Larvae), tackles a practical challenge faced by breeders, and rapidly counting wheat blossom midge larvae, both Sitodiplosis mosellana and Contarinia tritici, to characterise variety susceptibility. Using smartphone RGB images and YOLOv-based object detection, the best-performing model achieved high accuracy and successfully distinguished between the two visually similar species. An online counting application has been developed, currently accessible to Walloon Agricultural Research Centre members. The labelled COYL-1 dataset is publicly available at https://doi.org/10.5281/zenodo.19402333 for community use. A companion article by Antoine Deryck et al. is under submission at Plant Phenomics Journal.
Why it matches plant phenotyping methodsRGB画像と深層学習によりコムギ穂の病徴を検出・定量する手法の開発とセンサー／画像手法の検証が中心であり、植物病害表現型の取得に該当する。
abstractPHENET's Use Case 1 on plant health is validating sensors and imaging methods for the assessment of wheat ear diseases
Abstract Maize is a globally important food crop, and its yield and quality are vulnerable to various leaf diseases. To address issues such as blurred edges of disease spots and difficulty in small target detection, this study proposes the MAC-YOLO11 model improved on the basis of YOLOv11m. The model introduces the MSPP module to enhance the extraction capability of edge and directional features, and incorporates the spatial position attention module CDSA to strengthen the modeling capability for differences in lesion morphology, texture, and spatial distribution. We designed the APC module to expand the effective receptive field at a low parameter cost through asymmetric convolution branches. The dataset covers 11 categories: northern leaf blight, brown spot, common rust, smut, downy mildew, fall armyworm larval damage, gray leaf spot, maize streak virus disease, adult corn borer damage, corn borer larval damage, and healthy maize leaves. Results show that the MAC deep learning model achieves mAP50 and mAP50:95 of 94.1% and 83.5%, respectively, with overall performance superior to YOLOv11m and other mainstream models. This study provides a technical solution for intelligent identification of maize diseases and holds significant value for disease monitoring and precise control in smart agriculture.
Why it matches plant phenotyping methodsトウモロコシ葉の病斑形態・テクスチャ・空間分布を画像から識別する深層学習モデルを開発・評価しており、植物病害状態の画像ベース表現型計測が中心である。
abstractthis study proposes the MAC-YOLO11 model improved on the basis of YOLOv11m.
Reproduction assets foundThe paper's authors explicitly state that the source code and implementation details of the proposed MCA-YOLO11 maize leaf disease detection model are publicly available on GitHub, matching an allowed URL. No public dataset deposit is stated for the 17,729-image maize leaf disease dataset.Code · publicThe source code and implementation details for the proposed model are publicly
available on GitHub at: https://github.com/xuzhiheng0402/MCA-modelOpen asset ↗xuzhiheng0402/MCA-modelpdf-page:18 lines:1-53Plant phenotyping relevance match · UnverifiedEurope PMC · checked 15 Sept 2026
Abstract Accurate detection of tomato leaf diseases is essential for sustainable tomato production. To overcome the limitations of existing detection models, such as large parameter sizes, insufficient accuracy, weak robustness, and poor small-target detection performance, this study proposes a lightweight tomato leaf disease detection algorithm based on an improved Real-Time Detection Transformer (RT-DETR), named Tomato Leaf Diseases RT-DETR (TLD-RTDETR). Specifically, a partial convolution-based PConvBlock is introduced into the backbone to enhance feature extraction while reducing model complexity. In addition, a Coordinate Attention-based hierarchical feature pyramid module (CA_HSFPN) is designed to suppress background interference and strengthen small-target feature representation. Furthermore, a learnable positional encoding strategy is integrated into the feature encoding stage to improve the extraction of critical disease features in complex environments. Experimental results show that TLD-RTDETR achieves an mAP of 92.9%, precision of 94.2%, and recall of 87.5% on the tomato leaf disease dataset, outperforming the RT-DETR-R18 baseline by 2.4%, 0.5%, and 3.3%, respectively. Meanwhile, the model size, parameter count, and computational cost are reduced by 38.1%, 38.1%, and 31.2%. Compared with mainstream methods, the proposed model achieves better detection performance with a more lightweight architecture. Additional visualization, anti-interference, and generalization experiments further verify its robustness and cross-scene adaptability, demonstrating its potential for practical deployment in tomato leaf disease detection.
Why it matches plant phenotyping methodsトマト葉の病徴を画像から検出・認識する軽量Transformer手法を開発し、精度・頑健性・汎化性能を検証しており、植物病害状態のフェノタイピング手法が中心である。
abstractthis study proposes a lightweight tomato leaf disease detection algorithm based on an improved Real-Time Detection Transformer (RT-DETR), named Tomato Leaf Diseases RT-DETR (TLD-RTDETR).
Abstract Objective Minimizing crop losses through the early detection of plant diseases is vital for enhancing global agricultural efficiency. While deep learning has emerged as a promising solution, a significant gap exists between laboratory performance and practical, in-field utility. This study evaluates this discrepancy through a dual-methodological approach. Methods First, a tertiary systematic literature review was conducted, synthesizing 22 secondary reviews encompassing over 750 unique primary studies to establish the current state of the art. Second, an empirical validation was performed using a VGG16 transfer learning model trained on three distinct dataset types, which vary in scale (small vs. large), environment (laboratory vs. in-field), and condition (raw vs. pre-processed). Results The tertiary review identifies Convolutional Neural Networks, particularly VGG architectures, as the leading model but highlights a critical reliance on private and unrealistic datasets. Furthermore, the analysis reveals that Accuracy, the most common metric, is often insufficient for evaluating the imbalanced datasets typical of the field. Empirical results corroborate these findings, demonstrating that VGG16 performance is highly dependent on dataset characteristics; models perform significantly better on large, pre-processed laboratory data than on realistic in-field datasets. Conclusion These findings suggest that many current models remain inapplicable to real-world agricultural scenarios. To bridge this reality gap, future research must prioritize the development of open-source, standardized, and validated in-field datasets to ensure the reliability and scalability of automated disease detection systems.
Why it matches plant phenotyping methods植物病害を画像から検出する深層学習手法を体系的にレビューし、VGG16を異なるデータセット条件で実証評価しており、病害状態の取得・推定方法が中心である。
titleA tertiary systematic literature review and experimental evaluation of deep learning models for plant disease detection
Pearl millet is an important crop in arid regions, but its yield is reduced by foliar diseases like Downy Mildew and Rust. Traditional and deep learning methods struggle with accurate lesion detection, severity estimation, and robustness under complex field conditions, and often lack interpretability for practical agricultural deployment. To address these challenges, this study proposes the Adaptive Severity-Aware Swin Attention Network (ASA-SAN), an integrated framework designed for disease segmentation, classification, and severity estimation in pearl millet leaves. The proposed architecture combines a Swin Transformer encoder for hierarchical feature extraction with a ResUNet++ decoder for accurate lesion segmentation. This is further enhanced using Adaptive Channel Attention to improve feature discrimination and a dual-stream classification network to jointly capture local lesion characteristics and global contextual information. Additionally, an Adaptive Disease Severity Index (ADSI) is introduced to quantitatively assess disease progression based on lesion area ratio, color degradation, edge irregularity, and texture variations. Experimental evaluations conducted on a pearl millet leaf dataset demonstrate that the proposed method achieves a Dice score of 97.8%, IoU of 95.6%, classification accuracy of 98.3%, and F1-score of 98.2%, outperforming several state-of-the-art methods. Furthermore, Grad-CAM visualizations enhance model interpretability by highlighting disease-relevant regions. Overall, the ASA-SAN framework provides a robust, interpretable, and severity-aware solution for automated pearl millet disease analysis, enabling early detection and supporting precision agriculture practices for improved crop protection and yield optimization.
Why it matches plant phenotyping methods真珠粟葉の病斑を画像から分割・分類し、病害重症度を定量推定する手法を中心に開発・評価しているため、植物表現型計測手法として含める。
abstractAdditionally, an Adaptive Disease Severity Index (ADSI) is introduced to quantitatively assess disease progression based on lesion area ratio, color degradation, edge irregularity, and texture variations.
Reproduction assets foundThe paper's phenotyping inputs are drawn from a public, open-access image dataset: the Pearl Millet Leaf Disease dataset (Version 2) hosted on Roboflow Universe, containing annotated images of Downy Mildew, Rust, and healthy pearl millet leaves. This is a paper-specific, publicly available asset directly used for the作者Dataset · publicThe dataset used in this research was taken from the publicly available open-access Pearl
Millet Leaf Disease dataset hosted on Roboflow Universe, which has images of Downy
Mildew, Rust and healthy pearl millet leaves annotated publicly available [26]. To ensure
experimental consistency and reproducibility, all experiments were conducted with Version
2 of the open access dataset.Open asset ↗Roboflow Universepdf-raw-page:10 lines:1-28Plant phenotyping relevance match · UnverifiedEurope PMC · bioRxiv · checked 5 Sept 2026
Guava cultivation is considerably influenced by foliar and fruit diseases whose overlapping symptoms and environmental variability make accurate field-level diagnosis challenging. Numerous studies have been conducted to find efficient methods of diagnosing plant diseases, but most focus on image-level classification and do not include lesion localization or pixel-level segmentation of the images within a single framework of analysis. This study proposes a comprehensive framework for utilizing automated image analysis to classify guava leaf and fruit diseases at the image level, locate lesions, and segment lesions at the pixel level from multiple images of the same type of disease collected from various growing conditions. The dataset was enriched through three augmentation strategies including standard preprocessing, structured augmentation, and GAN-based synthetic image generation, expanding the effective training data to approximately 7,000 images, while a 5-fold cross-validation strategy guided model selection and final performance was assessed on a held-out test set. The experimental evaluation of multiple state-of-the-art Convolutional Neural Networks (CNNs) for the classification of guava leaf and fruit diseases indicated that the model generated using the ResNet50+DenseNet121 model fusion achieved the highest classification accuracy of 98.20%. For lesion detection and segmentation, YOLOv8-seg outperformed Mask R-CNN, achieving mAP@0.5 of 0.907 and 0.889, and mAP@0.5:0.95 of 0.783 and 0.769 for detection and segmentation, respectively, with a balanced precision–recall profile. The techniques of Explainable AI (XAI) were used to increase the transparency of this model by identifying areas in the image that are significant to the actual lesion. The framework was further designed with practical web-based deployment in mind, evaluating both lightweight and high-capacity models to balance computational efficiency against predictive accuracy. From this research, it was concluded that using model fusion, data augmentation, and segmentation-aware lesion detection would provide a solution for managing guava diseases effectively.
Why it matches plant phenotyping methodsグアバの葉・果実における病斑の分類、位置特定、画素レベル分割を自動化する画像解析フレームワークを開発・評価しており、植物の病害状態の表現型取得が研究の中心である。
abstractThis study proposes a comprehensive framework for utilizing automated image analysis to classify guava leaf and fruit diseases at the image level, locate lesions, and segment lesions at the pixel level
Agriculture is a critical sector for global food security, but plant diseases and nutrient deficiencies remain major challenges that reduce crop yield and economic returns for farmers. Traditional diagnosis methods depend on manual observation and expert intervention, which are often time-consuming, subjective, and inaccessible in remote regions. This paper presents an intelligent crop health analysis system that automates the detection of plant diseases and nutrient deficiencies using a hybrid deep learning framework. The proposed approach integrates Convolutional Neural Networks (CNNs) for feature extraction and classification with Generative Adversarial Networks (GANs) for synthetic image generation and dataset augmentation. The CNN model learns discriminative features such as color variations, texture patterns, and lesion characteristics from leaf images, while the GAN enhances dataset diversity by generating realistic samples, thereby addressing class imbalance and limited training data. The system is trained on a dataset containing more than 55,000 leaf images across 32 classes and is deployed through a Flask-based web application. It supports two operational modes: Basic Mode for disease identification and Advanced Mode for comprehensive crop health assessment through the integration of CNN-based predictions and rule-based nutrient analysis. Experimental results demonstrate improved classification performance, robustness, and scalability under real-world conditions. Additionally, the multilingual user interface enhances accessibility for farmers from diverse linguistic backgrounds. The proposed system provides an effective and practical solution for early crop health monitoring, enabling timely intervention, reducing dependency on agricultural experts, and contributing to increased agricultural productivity and sustainable farming practices.
Why it matches plant phenotyping methods葉画像から植物病害と栄養欠乏を推定するCNN・GAN手法と運用システムが研究の中心であり、植物の病徴・健康状態を直接評価する画像ベース表現型計測に該当する。
abstractThis paper presents an intelligent crop health analysis system that automates the detection of plant diseases and nutrient deficiencies using a hybrid deep learning framework.
The emergence of multimodal large language models (MLLMs) is opening a new avenue for explainable and interactive intelligent diagnosis in agriculture. However, generic MLLMs still face two major obstacles in plant disease recognition-insufficient fine-grained visual perception and misalignment between visual and linguistic features-which jointly limit diagnostic accuracy. To address these issues, we propose a Qwen2.5-VL-based full-chain fine-tuning framework termed dual-side synergistic low-rank adaptation. Unlike the mainstream paradigm that freezes the vision encoder, our method injects trainable LoRA adapters into both the vision encoder and the large language model, while establishing end-to-end gradient backpropagation across the entire multimodal pipeline. By using the supervision signal from autoregressive text generation (text-supervised visual learning), the framework directly drives deep optimization of visual representations, thereby enabling coordinated alignment between pixel-level perception and semantic-level understanding. We trained Qwen over CDDM and conducted in-domain (CDDM) and cross-domain (PlantVillage) experiments. The results show that the proposed 7B-parameter model achieves 98.8 and 96.0% diagnostic accuracy under in-domain and cross-domain scenarios, respectively. The recognition accuracy of Qwen in the case of cross-domain only decreases slightly, which demonstrates that the MLLM trained by our method exhibits excellent cross-domain recognition capability. This indicates that our method can significantly improve the robustness and generalization ability of MLLM in complex agricultural scenarios.
Why it matches plant phenotyping methods植物画像から病害状態を診断するMLLMのファインチューニング手法を開発し、ドメイン内外で精度検証しているため、植物フェノタイピング手法が中心である。
Plant health plays a critical role in agriculture, climate balance, and economic stability. However, plant diseases caused by bacteria, fungi, and viruses can significantly reduce crop productivity if not detected early. Traditional manual inspection methods are time-consuming, labor-intensive, and prone to human error, especially in large-scale farming. To address these challenges, this study proposes an automated and accurate plant disease detection system using deep learning-based object detection models for early disease diagnosis in agriculture. A publicly available dataset containing 38 different plant leaf diseases annotated in You Only Look Once (YOLO) format is used, along with a standardized preprocessing pipeline to ensure data quality and consistency. Three modern architectures: YOLOv8, YOLOv11, and YOLOv26 were trained and evaluated under identical conditions using the Ultralytics framework on Google Colab. Experimental results show that YOLOv11 achieves the highest accuracy in terms of precision, recall, and mean Average Precision (mAP), while YOLOv8 provides the fastest inference speed with lower computational complexity. Based on the results, the study concludes that YOLO-based models show great potential for plant disease detection, with YOLOv11 offering superior detection accuracy among the evaluated models. The practical implications of these findings lie in the potential for precision agriculture to monitor diseases in real-time, minimize crop losses, and aid in timely decision-making for farmers and agricultural stakeholders.
Why it matches plant phenotyping methods植物葉の病害状態を画像から検出するYOLOベース手法を提案し、複数モデルを同一条件で評価しているため、病害表現型の取得・抽出が中心である。
abstractthis study proposes an automated and accurate plant disease detection system using deep learning-based object detection models
Reproduction assets found保存済みの本文根拠を更新済みルールで再検証し、公開資産1件を確認しました。Dataset · publicFor this study, we obtained a publicly accessible dataset (plant disease detection dataset) from Kaggle [30]. The
dataset comprises 2569 images of 13 different plant species, as shown in Figure 2.Open asset ↗Kagglepdf-page:6 lines:1-41Code / dataset availability confirmedEurope PMC · checked 5 Sept 2026
The robust Dutch rose, also known as the Rosa hybrida is distinguished by its vibrant colors, superior product quality, and extended vase life. These rose varieties, originating from Netherlands, have proven highly successful in Indian agricultural conditions and the international export industry. The dataset consists of a total of 1,995 high resolution petal image collected during this research, encompassing petal color categories, such as red, yellow, white, pink, purple, orange, bi-color, and multi-color, as well as health statuses including fresh, dry, and diseased petals. The primary purpose of this dataset is to support machine learning activities in agriculture and specifically for tasks such as automatic petal health evaluation and rose variety categorization. Although the rose flower is scientifically rich and has a wide range of industrial uses, it has not been given much attention in machine learning, especially when compared to other plant-based datasets. This study adds to the accuracy of quality assessment through the use of modern computer vision and machine learning methods, thus helping the agriculture sector, rose-based edible product making, and flavor development industries.
Why it matches plant phenotyping methodsバラ花弁画像データセットの構築と、花弁の健康状態・色分類による植物状態評価が研究の中心であり、画像ベースの表現型計測データセットに該当する。
abstractThe dataset consists of a total of 1,995 high resolution petal image collected during this research, encompassing petal color categories, such as red, yellow, white, pink, purple, orange, bi-color, and multi-color, as well as health statuses including fresh, dry, and diseased petals.
Reproduction assets foundThe paper's own rose petal image dataset is publicly deposited on Mendeley Data, and the authors' validation/metadata scripts are publicly available on GitHub. Both are paper-specific, public, and actionable.Dataset · publicThe RoseVisuals dataset is publicly available on Mendeley Data at Direct URL to data: https://data.mendeley.com/datasets/f44jwtbfjg/5. Data Identification Number: 10.17632/f44jwtbfjg.5. Repository Name: RoseVisuals.Open asset ↗Mendeley Data · 10.17632/f44jwtbfjg.5html-lines:246-284Code · publicThe RoseVisuals codebase, comprising all validation scripts, is publicly available on GitHub Repository at https://github.com/Arya-S14/RoseVisuals-Validation-Doc.Open asset ↗GitHubhtml-lines:246-284Plant phenotyping relevance match · UnverifiedEurope PMC · checked 14 Sept 2026
Plant disease recognition remains challenging due to complex imaging conditions, inter-class visual similarity, and the need to deploy accurate models on resource-constrained devices. Although convolutional neural networks (CNNs) are effective at local pattern extraction, their locality bias limits global context modeling. Transformer-based models alleviate this issue, yet many existing designs do not explicitly exploit the complementarity between spatial and channel interactions. To address this limitation, we propose a Dual-Channel Feature Enhancement Network (DC-FEN) as the teacher model, which integrates spatial attention and channel attention to capture lesion-sensitive spatial cues and discriminative channel semantics. To enable lightweight deployment, we further introduce a Category-Guided Knowledge Distillation (CGKD) framework that transfers both category-level semantic knowledge and feature-level relational knowledge from the teacher to a MobileNetV3 student. Experimental results show that the proposed distillation framework consistently improves the performance of the lightweight MobileNetV3 student over its original baseline.
Why it matches plant phenotyping methods植物病害の病徴画像から病害状態を認識する軽量な画像解析モデルと知識蒸留手法を開発しており、植物の病害表現型推定が研究の中心である。
abstractPlant disease recognition remains challenging due to complex imaging conditions, inter-class visual similarity, and the need to deploy accurate models on resource-constrained devices.
Visual inspection of apple leaf diseases is inefficient and subjective, limiting large-scale orchard applications. To realize rapid and accurate disease identification, this paper proposes an improved YOLOv11 model integrated with a Dual Sparse Selection Attention (DSSA) module. By embedding the DSSA module into the key layers of the YOLOv11 backbone network, the model enhances fine-grained feature extraction for small and complex lesions while suppressing background interference. A tailored training strategy with an optimized learning rate and optimizer is designed to ensure stable convergence. Experiments are conducted on a dataset consisting of 7594 images covering four categories: black rot, rust, scab, and healthy leaves. The proposed model achieves precision of 0.973, recall of 0.978, mAP50 of 0.991, and 0.949 mAP50-95, outperforming YOLOv8, YOLOv9, YOLOv10, and the vanilla YOLOv11. Furthermore, a Qt-based visualization system is developed for practical orchard deployment. This method provides a reliable solution for intelligent apple leaf disease detection and smart orchard management.
Why it matches plant phenotyping methodsリンゴ葉の病斑・健全状態を画像から推定する検出モデルを開発・比較し、実用システムまで構築しており、植物病害表現型の取得手法が中心である。
abstractVisual inspection of apple leaf diseases is inefficient and subjective, limiting large-scale orchard applications.
Early identification of leaf-related infections in cauliflower is crucial for reducing crop damage and ensuring stable agricultural output. Traditional inspection techniques, which depend on human observation, are often inconsistent, labour intensive, and unsuitable for large farming environments. To overcome these challenges, this research introduces an intelligent hybrid framework combining Machine Learning (ML), Deep Learning (DL), and Transfer Learning (TL) for automated cauliflower leaf disease recognition. The proposed Cauliflower Leaf Disease Classification (CLDC) system utilizes a curated dataset categorized into eleven disease classes. Image preprocessing involves resizing to 64×64 pixels and normalization to enhance model performance. A novel Inception Residual Networkbased Convolutional Neural Network (IRN-CNN) is designed to extract high-level discriminative features using customized inception-residual modules. These deep features are further processed using Logistic Regression (LR) to improve classification accuracy and generalization. For performance benchmarking, conventional models such as Decision Tree Classifier (DTC), Artificial Neural Network (ANN), and standalone LR are also implemented. The system is integrated into a Tkinter-based Graphical User Interface (GUI), enabling functionalities such as dataset upload, preprocessing, training, evaluation, and real-time prediction. Batch image analysis with CSV export support enhances usability for large-scale applications. Additionally, an Explainable Artificial Intelligence (XAI) component powered by a generative AI API provides detailed insights, including disease severity, affected regions, and crop verification. A Telegram Bot interface further extends accessibility for mobile-based detection. Experimental findings confirm that the proposed IRN-CNN hybrid model delivers superior accuracy and reliability, making it a scalable solution for smart agriculture and precision farming systems.
Why it matches plant phenotyping methodsカリフラワー葉の病害状態を画像から分類・推定する手法の開発と性能比較が研究の中心であり、植物病害フェノタイピングに該当する。
abstractthis research introduces an intelligent hybrid framework combining Machine Learning (ML), Deep Learning (DL), and Transfer Learning (TL) for automated cauliflower leaf disease recognition.
An early and precise identification of plant diseases helps to increase the efficiency of farming operations and minimize the economic losses associated with plant diseases. Nevertheless, applying deep learning models for plant disease identification in an agricultural setting poses certain difficulties due to high computational costs and insufficient edge device computing power. This paper presents a transfer learning-based framework for multi-class plant disease detection using MobileNetV2 and EfficientNet-B0 models. For the purpose of research, the PlantVillage dataset including potato, bell pepper, and tomato leaves was used. Images from this source underwent pre-processing that included resizing, normalizing, and augmenting images. Both transfer learning approach and fine-tuning helped to modify pre-trained CNNs for multi-class classification of different diseases affecting plants' leaves. Experiments have shown that EfficientNet-B0 model performed much better with accuracy of 95.7% and AUC of 0.98. Moreover, the proposed algorithm was exported as a TensorFlow Lite model and implemented in the Streamlit application for efficient edge deployment.
Why it matches plant phenotyping methods植物葉画像から病害を推定する深層学習フレームワークの開発・性能評価が研究の中心であり、植物の病害状態を直接推定するため、植物フェノタイピング手法として採録する。
abstractThis paper presents a transfer learning-based framework for multi-class plant disease detection using MobileNetV2 and EfficientNet-B0 models.
Agriculture faces significant challenges due to plant diseases, which directly affect crop yield, quality, and farmer income. Early detection of agricultural diseases is critical to prevent large-scale crop losses and reduce excessive use of pesticides. Traditional disease detection methods rely on manual inspection by farmers or agricultural experts, which is time-consuming, subjective, and often inaccurate, especially during early stages of infection. With the advancement of Machine Learning (ML) and Internet of Things (IoT) technologies, automated and intelligent solutions for crop disease detection have become feasible. The IoT-Based Crop Disease Recognition and Field Notification System proposes an intelligent system that combines machine learning–based image analysis with IoT-enabled monitoring to detect crop diseases at an early stage. The system uses an ESP32 microcontroller integrated with an ESP-CAM module to capture images of plant leaves. These images are analyzed using trained machine learning models to identify disease patterns and abnormalities. The detection results are communicated through an IoT platform, enabling remote monitoring and real-time alerts. An LCD display provides local status information, while a buzzer generates immediate alerts when a disease is detected. The system is designed to be cost-effective, scalable, and suitable for deployment in real agricultural environments. By enabling early disease identification and timely intervention, the proposed solution helps improve crop productivity, reduce losses, and promote smart and sustainable agricultural practices.
Why it matches plant phenotyping methods植物葉の画像を機械学習で解析し、病徴・異常を検出するシステムが研究の中心であり、植物病害状態の画像ベースフェノタイピングに該当する。
abstractThe system uses an ESP32 microcontroller integrated with an ESP-CAM module to capture images of plant leaves.
Remote sensing using uncrewed aerial vehicles (UAVs) and AI, particularly machine learning and deep learning, is increasingly applied to crop pest and disease detection. However, the real-world robustness of these models remains uncertain. We conducted a meta-analysis of 121 UAV-based studies published between 2018 and 2024, examining dataset construction and model validation practices. We found that 89% of studies lacked truly independent test datasets, resulting in inflated performance estimates and limited generalisability. Only 11% evaluated models on independent fields, and successful transferability was uncommon. Our analysis identifies key methodological limitations underlying this issue and provides recommendations to improve robustness, reproducibility, and practical relevance. Overall, current validation practices require substantial improvement to ensure reported model performance reflects field-level applicability.
Why it matches plant phenotyping methodsUAV・AIによる作物の病害検出手法を対象に、121研究のデータセット構築とモデル検証をメタ分析し、独立圃場での性能や再現性を評価する方法論的レビューである。病害検出は植物の病態・重症度に関わるため、手法中心の研究として採用する。
abstractWe conducted a meta-analysis of 121 UAV-based studies published between 2018 and 2024, examining dataset construction and model validation practices.
Plant diseases cause 20-40% annual crop losses worldwide, yet conventional detection methods remain slow, subjective, and inaccessible to smallholder farmers. This work presents GreenAid, an end-to-end plant disease detection and management system that bridges the gap between laboratory-level deep learning performance and practical agricultural deployment. The system integrates a confidence-weighted ensemble of three CNN architectures (VGG16, ResNet50, InceptionV3), fused through per-class F1-score reliability weights, with a cross-platform mobile application supporting offline inference via TensorFlow Lite, a web-based analytics dashboard, and an NLP-powered chatbot. On the PlantVillage benchmark (87,000 images, 38 classes, 14 species), the ensemble achieves 98.74% accuracy and 98.48% F1-score. Systematic comparison of six fusion strategies confirms that per-class F1 weighting outperforms alternatives including majority voting, simple averaging, and stacking. The INT8-quantised deployment model (78 MB, 127 ms on a mid-range smartphone) retains 98.43% accuracy with per-class analysis confirming disproportionate impact on the five most challenging categories. All pairwise model comparisons are validated by McNemar's test ([Formula: see text]). The primary contribution is the complete, reproducible integration of competitive classification, edge deployment, and an end-to-end agricultural delivery pipeline (mobile application, web dashboard, and NLP chatbot) rather than the ensemble mechanism itself.
Why it matches plant phenotyping methods植物画像から病害状態を推定する深層学習手法の開発・比較検証と、モバイル実装が中心であり、植物病害フェノタイピング手法として適格。
abstractThis work presents GreenAid, an end-to-end plant disease detection and management system
Reproduction assets foundThe paper's plant-disease phenotyping analysis is built on the public PlantVillage dataset (87,000 leaf images, 38 classes), which the authors explicitly state is publicly accessible via Kaggle. No authors' analysis code, trained models, or checkpoints are released with an explicit public URL in the supplied blocks.Dataset · publicThe dataset used in this study is the publicly available PlantVillage dataset, accessible via Kaggle at:Open asset ↗Kagglelines:270-340Code / dataset availability confirmedEurope PMC · checked 14 Sept 2026
Sapodilla (Manilkara zapota), or chickoo, is a key tropical fruit, very popular in India, Mexico, and Thailand, as it is nutritionally and economically valuable. Nonetheless, the production of sapodillas is often affected by several diseases, which reduce fruit quality and quantity. The dataset used in this paper is a sapodilla fruit image dataset, comprising 1,518 images, gathered in the field under the practicing conditions on 18 February 2025, 22 February 2025, in Rahu village, Pune district, Maharashtra, India, with the use of smartphone cameras. The data is sorted into four categories, namely: Anthracnose, Bacterial rot, Healthy, and Sap bleeding. The photographs were taken in different backgrounds and in different lighting conditions to represent real-life cultivation conditions. The data is expected to be useful in machine learning-based plant disease detection, classification, and analysis, and spur the creation of intelligent and sustainable agricultural systems.
Why it matches plant phenotyping methodsサポディラ果実の病害・健全状態を画像で記録したデータセット自体が中心で、植物病害の画像ベース表現型解析に利用できる。
titleA curated image dataset for sapodilla fruit (Manilkara zapota) disease and fruit quality analysis.
Reproduction assets found保存済みの本文根拠を更新済みルールで再検証し、公開資産1件を確認しました。Dataset · publicData identification number: Version: V1, Doi: 10.17632/xbzd2fjd3p.1
Direct URL to data: https://data.mendeley.com/datasets/xbzd2fjd3p/1Open asset ↗10.17632/xbzd2fjd3p.1html-lines:1-114Plant phenotyping relevance match · UnverifiedCrossref · checked 15 Sept 2026
Published20 Jun 2026International journal of advancements in technical research and development
Crop diseases cause 20-40% of food losses every year and cause economic damage of more than USD 220 billion per year on a global scale. The basic problems in precision agriculture remain the same as early and accurate disease detection. Hyperspectral imaging (HSI) is a type of imaging technique that captures hundreds of contiguous wavelengths of the electromagnetic spectrum spanning from 400 to 2500 nm that has been found to be a useful non-destructive diagnostic tool that can detect the subtle biochemical differences that occur in plant tissue before symptoms are visible. The paper critically summarizes and reviews the literature from 2000 to 2024, especially focusing on the application of AI and machine learning (ML) for HSI-based crop disease detection. A total of 48 primary studies are reviewed and grouped into five thematic categories: (1) spectral vegetation index methods, (2) classic machine learning classifiers, (3) deep learning architectures, (4) attention and transformer mechanisms and (5) disease severity quantification. Based on this review, four gaps in the literature are identified: (1) lack of comparison of classical and deep learning models on the same splits of the same datasets, (2) underutilisation of the SWIR-2 spectral range (>2000 nm) for the discrimination of diseases, (3) lack of integrated spatial mapping of the disease severity from spectral index fusion, and (4) lack of lightweight deep learning spectral-only architectures for field deployment in resource-constrained environments. These gaps together form a promising research program based on this AI approach to automated crop disease detection, and the experimental research work reported in our companion paper is fueled by these gaps.
Why it matches plant phenotyping methods植物病害の症状・重症度をハイパースペクトル画像とAIで推定する手法を対象とした体系的レビューであり、植物フェノタイピング手法のレビューが中心。
abstractHyperspectral imaging (HSI) is a type of imaging technique that captures hundreds of contiguous wavelengths of the electromagnetic spectrum spanning from 400 to 2500 nm that has been found to be a useful non-destructive diagnostic tool that can detect the subtle biochemical differences that occur in plant tissue before symptoms are visible.
Wheat is a major staple crop, and storage mold growth poses a severe threat to grain safety and quality stability. Natural mold development in stored wheat exhibits subtle, localized, and highly heterogeneous characteristics. Existing unimodal methods and global fusion approaches generally suffer from insufficient local feature sensitivity, hindering fine-grained mold severity grading. To address this limitation, we propose a Mask-Guided Fine-Grained Fusion Network, a weakly supervised framework based on local RGB-HSI fusion. This framework employs a dynamic parallel A/B experimental design to construct time-matched proxy labels via weakly supervised learning. A standardized preprocessing pipeline including single-kernel extraction, foreground segmentation, and cross-modal registration is established to resolve RGB-HSI spatial misalignment, ensuring physical-level spatial consistency of multimodal features. The model incorporates a Foreground-Aware Spectral Recalibration (FASR) module to suppress background noise, a Mask-Guided Dilated Cross-modal Local Attention (MDCLA) mechanism to establish fine-grained local mappings between RGB visual phenotypes and hyperspectral responses, and a sample-level adaptive fusion strategy to dynamically weight features by modal reliability, enhancing representation of complex samples across all mold stages. Experiments show that the Mask-Guided Fine-Grained Fusion Network achieves 0.9689 classification accuracy, 0.9698 Macro-F1 score, and 0.0593 Mean Absolute Error (MAE), significantly outperforming state-of-the-art unimodal deep models and global attention fusion baselines. This work provides a proof-of-principle framework for fine-grained non-destructive mold risk assessment in stored wheat.
Why it matches plant phenotyping methodsRGB-HSI融合と弱教師あり学習により、保存小麦粒のカビ状態・重症度を推定する手法が研究の中心であり、植物器官の病害状態を直接評価している。
abstractwe propose a Mask-Guided Fine-Grained Fusion Network, a weakly supervised framework based on local RGB-HSI fusion.
Plant phenotyping relevance match · UnverifiedCrossref · Europe PMC · checked 13 Sept 2026
Modern agriculture operates at an unprecedented crossroads, it must simultaneously accelerate crop yields to feed an expanding global population and adapt to the severe, fluctuating pressures of climate change, structural soil degradation, abiotic water deficits, and evolving biological threats. Historically, selecting resilient crop varieties and implementing field-scale management strategies relied extensively on destructive, labor-intensive, and fundamentally subjective visual metrics. This manual processing approach has long been recognized as the primary operational bottleneck in agricultural advancement.To bridge the gap between rapidly expanding genomic data and actual field performance, the systematic, non-destructive quantification of structural and functional plant traits, plant phenotyping, has emerged as a transformative frontier. By integrating high-throughput engineering, multi-scale remote sensing, deep learning, and advanced molecular biology, modern phenotyping transitions crop science away from qualitative estimation toward highly reproducible, multidimensional data frameworks. This Research Topic presents new advances in advanced 3D reconstruction and deep semantic segmentation at the seedling stage; amodal fruit segmentation, morphological extraction, and early water-stress diagnostics; high-throughput in-field seedling counting and dynamic density modeling; multimodal foundation models, network pruning, and intelligent phytoprotection; aerial and spaceborne remote sensing for canopy analysis and weed monitoring; plant physiology, functional spectroscopy, and functional genomics under abiotic stress; and automated diagnostics for real-time orchard scouting and vineyard management.Automating the characterization of complex spatial layouts under controlled or greenhouse environments is essential for early variety selection and early-stage structural evaluation. Several contributions within this volume provide key breakthroughs in navigating overlapping tissues, severe occlusions, and low-contrast edge regions. showcases how substituting standard convolutions with deformable convolutions enables deep neural networks to accurately isolate the main stem of mature, high-density crops like soybeans. This architecture overcomes the traditional challenges of color mimicry and severe occlusion by pods and leaves, achieving an outstanding mIoU of 90.58% and providing reliable indices for lodging resistance and structural yield modeling (R 2 = 0.9746).Accurately extracting fruit morphology under commercial greenhouse conditions remains heavily constrained by overlapping crop structures, foliage cover, and variable shadows. Simple semantic masks typically fail when a target fruit is partially blocked, leading to a loss of key volumetric data.To resolve the challenge of hidden boundaries, Li, Yin, et al. (2025) developed CGA-ASNet, a specialized RGB-D amodal segmentation network driven by a Contextual and Global Attention (CGA) module designed to restore occluded tomato regions. Trained on a high-fidelity synthetic greenhouse dataset (Tomato-sim) generated via NVIDIA Isaac Sim's Replicator Composer and optimized with a mean coordinate fusion algorithm for real-world validation, this architecture expands the network's receptive field to predict the complete, hidden circular forms of occluded tomatoes, achieving an F@0.75 score of 94.2 and an amodal mIoU of 82.4%. This proves that simulation-to-real (Sim2Real) domain pathways can successfully decode full physical volumes under dense commercial canopies.Complementing this structural restoration, Yang, Li, et al. (2025) designed an integrated diagnostic framework to identify early water stress dynamics in greenhouse tomatoes. Built upon an optimized YOLOv11n core, their system integrates adaptive kernel convolutions (AKConv) into the network backbone's C3k2 modules and implements a recalibration feature pyramid detection head based on the specialized P2 small-target layer. This combination achieved a 5.4% increase in mAP50-95 for identifying fine phenotypic parts. By applying automated geometric analysis to the extracted bounding boxes, the system extracts plant heights and petiole count with low relative errors, feeding these phenotypic parameters into a Random Forest classification routine that flags water-stressed plants with 98% accuracy to guide targeted, automated drip irrigation.Accurate plant stands during early vegetative stages represent the foundational metric required to establish true field emergence rates, validate seed vigor across diverse breeding blocks, and perform early yield predictions.To solve the challenges of small targets, extreme spatial density, and adjacent leaf overlap, Zang et al. (2025) designed DM_IOC_fpn, a wheat seedling counting framework that balances local and global contextual features. By structuring a point-annotated dataset and embedding a densityenhanced encoder module, their network balances micro-scale spatial limits with macro-scale canopy structures. Optimized through a combined loss function tracking counting, classification, and regression parameters, this architecture achieved low error scores (RMSE = 2.91; MAE = 2.23), outperforming standard object-detection benchmarks in complex field environments.At the same time, scaling up to real-time aerial monitoring required major reductions in model complexity to support resource-constrained edge computers on autonomous aerial platforms. Feng, Nie, and Li (2025) engineered an ultra-lightweight YOLOv8n variant tailored for real-time maize seedling counting from high-speed UAV RGB overflights. By reparametrizing RepConv with HGNetV2, they constructed a lean Rep_HGNetV2 backbone, integrated a Bidirectional Feature Pyramid Network (BiFPN) for multi-scale feature alignment, and implemented a Task Dynamically Aligned Detection Head (TDADH). This architecture compressed total model parameters by 47% and reduced weight sizes to 3.5 MB while maintaining a 96.5% detection accuracy and an ultra-fast processing speed of 146.3 FPS, paving the way for low-cost, real-time field scouting.Automated phytoprotection requires machine-vision architectures capable of generalizing across highly diverse species, complex field conditions, and varying computational boundaries. A significant subset of the published papers addresses these challenges through foundation model adaptation, multi-modal alignment, and efficient network compression.A major paradigm shift presented in this collection involves moving away from task-specific training and toward foundation model adaptation. Chen, Ruan, et al. (2026) introduce a novel architecture integrating the DinoV3 foundation model with a Unet framework to achieve robust leaf lesion segmentation across diverse species (such as coffee and black gram). By incorporating a Spatial Prior Module (SPM), their approach surpassed standard benchmark networks by over 10.5% in IoU while reducing inference times by approximately 93.6%, demonstrating that highparameter foundation models can be highly optimized for resource-constrained edge devices in real-time scouting.To solve the perennial problem of limited training data for rare or emerging crop diseases, Cooper et al. ( 2026) developed an ingenious synthetic data generation pipeline. Combining 3D procedural leaf modeling in Blender with diffusion-based disease synthesis (Stable Diffusion fine-tuned with LoRA and ControlNet), they synthesized highly accurate plant disease images with perfect groundtruth annotation masks. When deployed in low-resource data settings, combining these synthetic pipelines with restricted real-world datasets consistently drives significant improvements in downstream segmentation tasks. To tackle specific, complex pathologies, Xu, Chang, et al. (2025) developed the TSSC deep learning model, which embeds three-neighbor channel attention paired with a complementary squeeze-and-excitation mechanism. This specific architecture minimizes structural degradation risks while pushing classification accuracy to 99.61% for highly complex pea leaf pathologies. Similarly, Feng, Liu, et al. (2025) tackled overlapping leaf occlusions and small lesion footprints in citrus groves with YOLO-Citrus, an optimized framework integrating C3K2-STA, ADown modules, and a Wise-Inner-MPDIoU loss function to strike a balance between edge computational constraints and field deployment.UAVs and high-resolution satellite imagery have expanded the operational scale of phenotyping from individual pots to vast breeding blocks and commercial fields, allowing researchers to capture macro-dynamic parameters over time.In complex canopy systems that defy standard top-down aerial sensing, such as single-staked white Guinea yams, Iseki et al. (2026) demonstrated the distinct advantage of utilizing multi-angle (combined nadir and oblique) UAV imaging configurations. When coupled with support vector regression, this method captures complementary canopy-structure information to model shoot biomass trajectories (R 2 = 0.79) across multiple years and management zones. These nondestructive, time-series datasets enabled the fitting of genotype-specific Richard's growth curves using Bayesian inference, isolating valuable genetic variations in early growth allocation.To capture full-season vertical physiological changes over large scales, Li, Yue, and Luo (2025) developed a hybrid CNN-LSTM-Attention (CLA) model designed to estimate the full-period Leaf Area Index (LAI) in rice using multi-temporal UAV multispectral imagery. By using the CNN layer to extract instantaneous spatial features, the LSTM block to process seasonal time-series intervals, and a self-attention mechanism to weight critical growth transitions, their platform achieved a high coefficient of determination (R 2 = 0.92) and kept relative root mean square errors (RRMSE) below 9%. This network minimized soil background noise during early vegetative stages (LAI values 1-
Why it matches plant phenotyping methods植物フェノタイピングの技術動向を扱うEditorialであり、画像解析、UAVセンシング、深層学習、形質抽出などの方法が中心的に整理されている。
Wheat (Triticum aestivum L.) is a staple crop of paramount importance to global food security; however, its productivity is significantly compromised by foliar diseases. Conventional diagnostic approaches, relying on manual observation or laboratory analyses, are often labor-intensive and susceptible to inaccuracies. While recent advancements in deep learning present promising avenues for automated disease detection, persistent challenges such as limited annotated datasets, environmental heterogeneity, and model generalization continue to hinder optimal performance. This study proposes a novel hybrid deep learning model called HybridViT, which combines ConvNeXt and Vision Transformer (ViT) architectures with the Convolutional Block Attention Module (CBAM) to improve the classification of wheat leaf diseases. While ConvNeXt ensures local feature extraction and ViT provides global contextual understanding, CBAM dynamically highlights the most discriminative features. Additionally, the Contrast Limited Adaptive Histogram Equalization (CLAHE) method is employed to enhance the visibility of disease symptoms in low-contrast leaf images. Unlike conventional hybrid CNN-Transformer approaches that rely on static feature concatenation, the proposed model employs an adaptive gated fusion mechanism to dynamically balance local and global feature representations. The fused features are further refined using a lightweight CBAM module to enhance discriminative capability. Additionally, Contrast Limited Adaptive Histogram Equalization (CLAHE) is applied to improve feature visibility under varying illumination conditions. Evaluated on three different datasets obtained under both controlled and field conditions, HybridViT achieved 100% accuracy on balanced datasets and 99.10% accuracy on complex images captured in real-world conditions, surpassing existing methods. Furthermore, a 5-fold cross-validation strategy yielded an average accuracy of 99.04% ± 0.22, demonstrating the model's robustness and stability across different data splits. The results demonstrate the model's robustness against environmental noise, lighting variations, and class imbalance. This approach, which enables early and accurate disease diagnosis, supports sustainable agricultural practices, reduces pesticide use, and contributes to global food security.
Why it matches plant phenotyping methods小麦葉の病徴を画像から分類する深層学習手法を開発・検証しており、植物病害状態の取得・推定が研究の中心です。
abstractThis study proposes a novel hybrid deep learning model called HybridViT, which combines ConvNeXt and Vision Transformer (ViT) architectures with the Convolutional Block Attention Module (CBAM) to improve the classification of wheat leaf diseases.
Reproduction assets foundThe paper evaluates HybridViT on three public wheat leaf disease image datasets from Kaggle, cited in the reference list with explicit URLs. These are the paper-specific image inputs used for its disease-classification measurements. No author analysis code, trained model checkpoints, or supplementary code deposit is披露dDataset · publicAvailable: https://www.kaggle.com/datasets/olyadgetch/wheat-leaf-datasetOpen asset ↗Kaggle · olyadgetch/wheat-leaf-datasetpdf-page:51 lines:1-64Dataset · public[78] J. Jayaprakash, “Wheat Leaf Disease,” Kaggle. Accessed: May 1, 2026.
[Online]. Available:
https://www.kaggle.com/datasets/jayaprakashpondy/wheat-leaf-diseaseOpen asset ↗Kaggle · jayaprakashpondy/wheat-leaf-diseasepdf-page:51 lines:1-64Dataset · public[79] S. Kumar, “Multiple Plant Diseases Dataset,” Kaggle. Accessed: May 1, 2026.
[Online]. Available:
https://www.kaggle.com/datasets/samareshkumar/multipleplantdiseasesOpen asset ↗Kaggle · samareshkumar/multipleplantdiseasespdf-page:51 lines:1-64Code / dataset availability confirmedEurope PMC · checked 5 Sept 2026
The global food security is severely threatened by various bacterial and fungal diseases that significantly degrade the quality, yield and productivity of wheat crop. This increases the need for an accurate and efficient system to improve wheat yield and mitigate these losses by enabling early intervention. The dataset used in this research comprises of 10,000 images from brown rust, yellow rust, powdery mildew, loose smut diseases and healthy wheat plants. The existing neural networks, ensembling and transformer-based models used for classifying wheat diseases are limited by high computational resource requirements that leads to inefficient feature extraction. These challenges are addressed by proposing a customized, lightweight and optimized Swin-Streamlined High Accuracy and Reduced Parameters (Swin-SHARP) transformer, a lightweight and optimized transformer model that enhances feature extraction while significantly reducing computational overhead. In particular, Swin-SHARP results in 82.5% reduction (48.9M to 8.5M parameters), making it an attractive solution for resource-constrained environments. The extracted features are further optimized by integrating the Swin-SHARP transformer with boosted Model-Agnostic Meta-Learning (MAML) and a weighted ensembling strategy to enhance generalization and classification accuracy. Our proposed model achieves a remarkable 98.1% accuracy, significantly outperforming existing CNN-based solutions, ensemble approaches, transformer, and deep learning models. We also cross-validated our proposed model on an unseen wheat plant diseases dataset, achieving 95.57% accuracy. Our proposed model is also compared against prominent models such as Inception-v3, ResNet-18, and VGG-16, which outperforms them by 1.6%, 1.7%, and 2.6%, respectively. The comparison with existing state-of-the-art models, including Sequential CNN, SGDR-S, Inception-v3, Cereal Conv, Darknet-53 CNN, EfficientNet B3, GLNet, CNN & SVM, Customized CNN, CaiT-YOLOv9 and MSFNet revealed that our method outperforms them by 0.6%, 5.8%, 5.3%, 0.75%, 2.8%, 2.68%, 1.42%, 1.3%, 3.31%, 3.29%, and 2.4% respectively. These results demonstrate the effectiveness and practicality of the Swin-SHARP transformer for wheat disease classification, particularly for real-time agricultural applications on mobile and embedded systems aimed at early disease detection and crop management.
Why it matches plant phenotyping methods小麦の病徴画像から植物の病害状態を推定する深層学習手法を開発し、別データセットで交差検証しており、植物表現型取得・判定が研究の中心である。
abstractproposing a customized, lightweight and optimized Swin-Streamlined High Accuracy and Reduced Parameters (Swin-SHARP) transformer
Reproduction assets foundThe paper's Data Availability Statement explicitly states that the authors' wheat disease dataset and analysis code are publicly available on GitHub (https://github.com/SWIN-SHARP/), which is a paper-specific, actionable asset. The paper also uses third-party public datasets (Zindi ICLR Workshop, Mundi, Watershed/GrabcCode · publicThe dataset and code used in this research have made publicly available on https://github.com/SWIN-SHARP/
SWIN-SHARP for reproducibility purposes.Open asset ↗SWIN-SHARPpdf-page:25 lines:1-104Code / dataset availability confirmedEurope PMC · checked 14 Sept 2026
Introduction Wheat stem rust (Puccinia graminis f. sp. tritici) remains a major threat to wheat production worldwide. Detecting the disease at the pre-symptomatic stage is important for earlier warning and more timely management. Methods We evaluated hyperspectral imaging and deep learning for pre-symptomatic wheat stem rust detection using a time-series dataset collected at 4-9 days post inoculation (DPI 4-9). Seven representative deep learning models were compared across DPI stages. A weighted cross-entropy strategy was then applied to the three strongest models, and model interpretability was examined using input gradient analysis, SHAP attribution, and vegetation-index screening. Results The weighted optimization increased overall F1-scores by 10.0%-18.4%. At the pre-symptomatic stage, the best model achieved an F1-score of 0.94 at DPI 4 and 0.99 at DPI 5, enabling detection before visible symptom development at DPI 6-7. Across the interpretability analyses, the 480-550 nm blue-green region emerged as the main source of information for pre-symptomatic detection, whereas the 750-870 nm near-infrared region contributed more general information on disease presence. Discussion These results show that hyperspectral imaging paired with deep learning can support accurate pre-symptomatic detection of wheat stem rust under controlled experimental conditions and provide useful evidence for future field-scale studies of early disease warning.
Why it matches plant phenotyping methods小麦の病害状態をハイパースペクトル画像と深層学習で検出する方法が研究の中心であり、時系列評価・モデル比較・性能改善・解釈性分析を含むため、植物フェノタイピング手法として含める。
abstractWe evaluated hyperspectral imaging and deep learning for pre-symptomatic wheat stem rust detection using a time-series dataset collected at 4-9 days post inoculation (DPI 4-9).
Reproduction assets found保存済みの本文根拠を更新済みルールで再検証し、公開資産1件を確認しました。Dataset · publicThe data can be accessed at: https://drive.google.com/drive/folders/1vpKPlPw5uK5AnKctaE2oYCuOaRFX4-yN .Open asset ↗lines:787-847Plant phenotyping relevance match · UnverifiedCrossref · checked 15 Sept 2026
Published19 Jun 2026International Journal of Creative and Open Research in Engineering and ManagementCited by 0 · OpenAlex ↗
The widespread impact of plant diseases on agricultural yield demands an intelligent, accessible, and real-time detection solution. This paper presents the Mobile Application for Automated Plant Disease Detection, a lightweight smartphone-based system that leverages a fine-tuned MobileNetV2 Convolutional Neural Network (CNN) to classify plant leaf diseases in real time. The system accepts smartphone camera images, applies preprocessing including resizing to 224×224 pixels and normalisation, and classifies the plant health state as Healthy, Early Blight, Late Blight, Leaf Curl, or Powdery Mildew with associated confidence scores. A Flask API backend hosts the trained model and communicates with a React Native mobile frontend to return classification results within 1.2 seconds on a 4G network connection. Firebase Cloud Messaging delivers real-time push notifications and treatment recommendations directly to the farmer's device. The system is deployed entirely on standard Android and iOS smartphones without any specialised hardware, sensors, or wearable devices. Experimental evaluation on the PlantVillage dataset with over 54,000 annotated leaf images demonstrated classification accuracy exceeding 96%, API response latency below 800 milliseconds, and zero dependency on dedicated agricultural equipment. Usability testing with agricultural practitioners confirmed intuitive operation without prior technical training. These results confirm that the proposed application offers an efficient, portable, and institutionally deployable solution for modern precision agriculture. Keywords—Plant disease detection; MobileNetV2; convolutional neural network; deep learning; precision agriculture; smartphone application; transfer learning; PlantVillage dataset; real-time classification; push notification
Why it matches plant phenotyping methodsスマートフォン画像から植物葉の病害・健康状態を推定するCNNベースの手法とアプリを開発・評価しており、植物病害表現型の取得が中心である。
abstractThis paper presents the Mobile Application for Automated Plant Disease Detection, a lightweight smartphone-based system that leverages a fine-tuned MobileNetV2 Convolutional Neural Network (CNN) to classify plant leaf diseases in real time.
Rice is a fundamental food source for more than half of the global population, making stable yields and quality improvements vital for food security and sustainable agricultural development. Early infections of rice leaf diseases often exhibit subtle symptoms, while conventional control methods based on empirical judgment and routine pesticide application result in both yield losses and environmental pollution. A Multi-scale closed-loop tuning via spatial frequency collaborative sensitivity (MCCA-YOLO) model has been proposed in this paper with a multiscale closed-loop tuning and spatial frequency collaborative attention mechanism for the early detection and classification of rice crop diseases. MCCA-YOLO incorporates a closed-loop tuning compound network architecture that combines a dual-backbone feature extractor with a spatial frequency enhancement module to achieve system self-verification feedback, reducing transmission errors and enhancing the texture features of leaves. The framework implements a cross-scale weighted fusion and a deformable spatial hybrid attention enhanced bidirectional feature pyramid fusion network for dynamic feature adaptation, effectively accommodating the complex morphology of rice leaf lesions. By conducting comprehensive ablation studies and comparative experiments with existing techniques on the rice plant diseases v8 dataset, the proposed approach achieves a mean average precision (mAP) of 92.2%, outperforming well-established methods, while delivering superior precision (0.915) and recall (0.900). Extensive empirical validation of additional v9 and Rice Leaf Spot Disease (RLSD) datasets for rice plant diseases further demonstrates the model's outstanding performance.
Why it matches plant phenotyping methodsイネ葉の病徴を画像から検出・分類するYOLOベース手法を開発し、アブレーション、比較実験、複数データセットで性能検証しており、植物病害表現型の取得手法が中心である。
abstractA Multi-scale closed-loop tuning via spatial frequency collaborative sensitivity (MCCA-YOLO) model has been proposed in this paper with a multiscale closed-loop tuning and spatial frequency collaborative attention mechanism for the early detection and classification of rice crop diseases.
Reproduction assets foundThe paper's rice leaf disease image datasets (Roboflow v8/v9, Kaggle RLSD) are explicitly declared publicly available, and the authors' MCCA-YOLO analysis code is stated to be open source on GitHub with a public URL.Code · publicOur code is publicly accessible as open source at: https://github.com/sstan12/MCCA-YOLOOpen asset ↗GitHub · sstan12/MCCA-YOLOlines:147-153Plant phenotyping relevance match · UnverifiedEurope PMC · checked 14 Sept 2026
Olive is a major agricultural crop extensively cultivated throughout the Mediterranean region. However, olive trees are vulnerable to several diseases that can negatively affect productivity and yield. One of the most widespread foliar diseases is olive leaf peacock spot, caused by the fungus Cycloconium oleaginum. Early detection of this disease is essential for preventing leaf drop, limiting disease spread, maintaining tree health, and reducing treatment costs before the infection reaches an advanced stage. In this study, a multimodal hybrid deep learning framework is developed to detect peacock spot disease in olive leaves and assess disease severity based on visual and numerical features. The proposed framework integrates olive leaf images with soil conditions, environmental conditions, and vegetation and stress indices to provide a more comprehensive disease analysis than image-only approaches. A ResNet50-based convolutional neural network is used to extract visual features from leaf images, while a multilayer perceptron processes the numerical sensor-based and index-based data. These features are then fused within a unified learning framework to classify disease stages and estimate leaf damage severity, including lesion coverage and yellowing percentage. The performance of the proposed model was evaluated using standard performance metrics suitable for both classification and regression tasks. For classification, the model was evaluated on 494 testing samples and achieved an overall accuracy of 97.77 %, with a macro F1-score of 0.9809 and a weighted F1-score of 0.9776. In addition, the model achieved low regression errors, with mean absolute errors of 1.16 % for lesion coverage and 1.42 % for yellowing estimation. These results demonstrate the effectiveness of the proposed multimodal framework for accurate peacock spot detection and severity assessment, supporting its potential use in smart agricultural monitoring and disease management.
Why it matches plant phenotyping methods画像とセンサーデータを統合し、オリーブ葉の病斑被覆率・黄化率という植物の病害状態を推定する深層学習手法が研究の中心であるため。
abstracta multimodal hybrid deep learning framework is developed to detect peacock spot disease in olive leaves and assess disease severity based on visual and numerical features
Rice, a staple food for more than half of the global population, faces significant yield and quality losses due to various diseases and environmental stresses. This paper presents a new Simplicial Finite-Element-Informed Neural Network based on the Musical Chairs Optimisation Algorithm (SFEINN-MCOA) to detect rice leaf disease precisely and efficiently. The first step involves the acquisition of the RGB image from the Rice Leaf Disease dataset. The Iterative Robust Peak-Aware Guided Filter (IRPAGF) is used to remove noise and enhance contrast, thus improving the image. The Graph-Based Soft-Balanced Fuzzy Clustering (GSBFC) method is used to separate diseased regions and then analyse them. The Self-Distillated Masked Autoencoder (SMA) is used to perform feature extraction and capture important attributes of leaves. The SFEINN classifies data under the category of healthy and diseased leaves, and the MCOA optimises the model parameters to achieve maximum accuracy and minimum error. Experimental findings reveal that the SFEINN-MCOA model has an accuracy of 99.9% and an F1-score of 98.9%, which is better and stronger. This smart system offers a secure, automatic, and effective system for early disease identification of rice and helps farmers to enhance crop health and yield sustainability.
Why it matches plant phenotyping methodsイネ葉の病斑領域を画像から抽出し、健全・罹病状態を自動判定する画像解析フレームワークが研究の中心であり、植物病害状態の表現型推定に該当する。
abstractThis paper presents a new Simplicial Finite-Element-Informed Neural Network based on the Musical Chairs Optimisation Algorithm (SFEINN-MCOA) to detect rice leaf disease precisely and efficiently.
Accurate and timely identification of plant diseases along with their severity is critical for effective crop management and minimizing agricultural losses. While recent advances in deep learning have demonstrated high performance in plant disease classification, limited attention has been given to quantifying disease severity, which is essential for informed agronomic decision-making. To address this gap, this study proposes TomatoMTL, a unified multi-task learning framework for simultaneous disease classification and severity estimation of tomato leaf diseases from a single image. The proposed architecture employs a shared ResNet50-based convolutional backbone augmented with CBAM-based feature refinement, followed by task-specific branches for disease classification and severity prediction. Furthermore, a cross-task attention mechanism is introduced to enable interaction between disease-specific and severity-related features, thereby enhancing the robustness of severity estimation. To effectively leverage partially labeled data, a masking strategy is incorporated during training. Experimental evaluation on a publicly available tomato leaf disease severity dataset demonstrates that the proposed model achieves 97.85% disease classification accuracy and 77.66% severity prediction accuracy, outperforming state-of-the-art single-task classifiers including EfficientNetV2-S, ViT-B/16, and ConvNeXt-Tiny as well as existing multi-task learning baselines including Cross-Stitch Networks and MTAN. Comprehensive ablation studies confirm the individual contributions of CBAM, MixUp and CutMix augmentation, and the cross-task attention mechanism. Statistical significance analysis across five independent runs yields p-values less than 0.001 and Cohen's d greater than 14, establishing the reliability of the reported improvements. Quantitative localization analysis reveals that the model achieves 89.4% Pointing Game accuracy, confirming that attention maps focus on biologically meaningful disease regions. The proposed framework represents a complete and effective approach for integrated plant disease analysis with strong potential for real-world precision agriculture applications.
Why it matches plant phenotyping methodsトマト葉画像から病害の重症度という植物状態を推定するマルチタスク画像解析手法を開発・評価しており、表現型取得・推定が研究の中心である。
abstractthis study proposes TomatoMTL, a unified multi-task learning framework for simultaneous disease classification and severity estimation of tomato leaf diseases from a single image.
Reproduction assets foundThe paper's Data availability and Code availability statements explicitly link a public Kaggle tomato leaf disease severity dataset (the phenotyping image data used) and the authors' public GitHub repository containing the TomatoMTL implementation scripts and documentation.Dataset · publicThe datasets analysed during the current study are publicly available in the kaggle Data repository at: https://www.kaggle.com/datasets/janiruwalisingha/tomato-leaf-disease-severity-dataset .Open asset ↗kaggle Data repository · tomato-leaf-disease-severity-datasetlines:354-386Code · publicThe implementation, along with relevant scripts and documentation, can be accessed through the following GitHub repository: https://github.com/Parnika798/tomato_leaf_disease .Open asset ↗GitHub repository · Parnika798/tomato_leaf_diseaselines:354-386Code / dataset availability confirmedEurope PMC · checked 5 Sept 2026
Accurate and efficient identification of cucumber leaf diseases is a critical step in preventing losses and facilitating timely intervention in agricultural activi-ties. However, most state-of-the-art plant disease recognition models, including those employing deep learning, often fail to identify spatial dependencies among symptomatic leaf feature regions, require high computational resources, and lack robustness in their predictions. To overcome these challenges, this paper pro-poses MobileGraph, a graph-aided deep learning model that jointly reasons local texture patterns and spatial dependencies among CNN-derived cucumber leaf feature regions using MobileNetV3 as a lightweight feature extractor. Experi-ments on a publicly available cucumber leaf disease dataset containing 5 classes and 4,000 images show that the proposed model achieves 99.75% accuracy, 99.75% macro F1-score, and 99.69% MCC, outperforming several state-of-the-art models including ResNet-152, EfficientNet-B7, DenseNet-201, ConvNeXt, and VGG16, while having a significantly lower computational cost of 0.465 GFLOPs. Explainability results from Grad-CAM and LIME indicate that the model is focused on biologically important regions of plant lesions. Furthermore, a proto-type mobile application illustrates the feasibility of real-time cucumber disease diagnosis for practical agricultural monitoring. These results indicate that Mobi-leGraph provides an efficient and interpretable solution for intelligent crop health surveillance.
Why it matches plant phenotyping methodsキュウリ葉の病斑という植物状態を画像から診断する深層学習手法を開発し、複数モデルとの性能比較・検証まで行っており、病害表現型の取得・推定が研究の中心である。
abstractExplainability results from Grad-CAM and LIME indicate that the model is focused on biologically important regions of plant lesions.
Reproduction assets foundThe paper's experiments use the publicly available Cucumber Disease Recognition Dataset (4,000 images, 5 classes) hosted on Mendeley Data, which is a paper-specific public phenotype/image asset. The MobileGraph source code is only available upon request, so it does not qualify as a public asset.Dataset · publicThe dataset analysed of this study, titled ”Cucumber Disease Recognition
Dataset” is publicly available in the Mendeley Data repository at
(https://data.mendeley.com/datasets/y6d3z6f8z9/1).Open asset ↗Mendeley Data · y6d3z6f8z9pdf-page:36 lines:1-71Plant phenotyping relevance match · UnverifiedCrossref · checked 14 Sept 2026
Published18 Jun 2026International Journal of Science, Strategic Management and TechnologyCited by 0 · OpenAlex ↗
Plant diseases significantly affect agricultural productivity and crop quality, making early detection essential for sustainable farming. This study presents a simple deep learning framework for automated plant disease detection using leaf images. A Convolutional Neural Network (CNN) model was developed and trained on a publicly available plant disease dataset to classify healthy and diseased leaves. Image preprocessing and augmentation techniques were applied to improve model generalization and performance. Experimental results demonstrate that the proposed framework effectively identifies plant diseases with high accuracy while maintaining low computational complexity. The proposed approach can assist farmers and agricultural experts in timely disease diagnosis and crop management.
Why it matches plant phenotyping methods葉画像から植物の健全・罹病状態を推定するCNN手法を開発しており、植物病害の表現型取得・分類が研究の中心であるため。
abstractThis study presents a simple deep learning framework for automated plant disease detection using leaf images.
Agricultural disease monitoring remains a critical challenge in precision farming, particularly when deploying computer vision systems on resource-constrained platforms. This study presents a rigorous comparative evaluation of four deep learning architectures—ResNet50, DenseNet121, a Binarized Neural Network (BNN), and YOLOv8-cls—for multi-class plant disease classification using the PlantVillage dataset (15 classes). Unlike prior benchmarking studies, we incorporate statistical validation through repeated stratified experiments (5 runs) and report mean ± standard deviation for accuracy, precision, recall, and F1-score. Results show that while DenseNet121 achieves high classification accuracy (99.48)% ± 0.12), it exhibits significantly higher inference latency. The BNN achieves minimal latency but suffers substantial performance degradation (88.31% ± 0.45). YOLOv8-cls provides the best trade-off, achieving 99.64% ± 0.09 accuracy with low latency (3.3 ms ± 0.2). Statistical comparison using paired t-tests confirms that YOLOv8 significantly outperforms ResNet50 p
Why it matches plant phenotyping methods植物病害を画像から分類する深層学習モデルを比較・反復実験・統計検証しており、植物の病害状態を推定する画像ベース表現型手法の技術評価が中心です。
abstractThis study presents a rigorous comparative evaluation of four deep learning architectures—ResNet50, DenseNet121, a Binarized Neural Network (BNN), and YOLOv8-cls—for multi-class plant disease classification using the PlantVillage dataset (15 classes).
Reproduction assets foundThe authors' Data Availability statement points to a public Zenodo deposit containing the dataset, source code, and models used for this paper's plant disease classification experiments. The PlantDoc Kaggle dataset and Ultralytics GitHub repositories are cited third-party resources, not paper-specific assets.Dataset · publicThe complete dataset is available at [Dataset, Source Code, and Models for: Deep Learning-based Plant Disease Detection using YOLOv8] via [https://doi.org/10.5281/zenodo.18895667].Open asset ↗zenodo · 10.5281/zenodo.18895667html-lines:284-295Plant phenotyping relevance match · UnverifiedCrossref · checked 6 Sept 2026
Global agriculture is seriously threatened by plant diseases, which result in large losses in both productivity and quality. Timely and accurate disease detection is essential for effective crop management and food security. This work presents an improved MobileNetV2 architecture with Modified Lite Attention (MLA) Model for detecting plant leaf disease. Our methodology incorporates pre-processing, feature extraction through attention model, convolution layers, and classifying into diseased or healthy categories. Further, multiclassification of diseases is performed on a dataset comprising 4432 samples including whitefly, leaf spot, leaf curl, yellowish and healthy leaves. The proposed attention model is compared with existing attention models like CBAM (Convolutional Block Attention Model), SE (Squeeze and Excitation), ECA (Efficient Channel Attention) and SDMnet (Spatially Dilated Multi-Scale Network) to validate our hybrid MLA feature extraction technique. Customizing the categorization with fully connected layers and utilisation of a pre-trained MobileNetV2 model allow the system to achieve excellent results. Findings show encouraging accuracy, surpassing 97% compared to existing techniques for multiclass dataset classification. The integration of MobileNetV2 with custom dense layers enables robust detection even with limited datasets, making it ideal for use in mobile or low-resource agricultural environments. Further, the proposed method is tested on the PlantVillage dataset consisting of 10,836 samples using K-Fold cross-validation for K = 5 and K = 4 to obtain an average accuracy of 98.4% and 98.69%, respectively.
Why it matches plant phenotyping methods植物葉の病徴を画像から分類する深層学習手法を開発し、複数モデルおよびデータセットで精度検証しており、病害状態の表現型取得が中心である。
abstractThis work presents an improved MobileNetV2 architecture with Modified Lite Attention (MLA) Model for detecting plant leaf disease.
Saudi Arabia is expanding its domestic coffee sector under Vision 2030, yet coffee farming remains vulnerable to leaf diseases and pest damage. Image-based artificial intelligence studies conducted under Saudi field conditions remain limited, particularly in relation to assessing image-based visible disease severity. This study designs a hierarchical deep learning framework for screening coffee leaf diseases using field-collected images of Saudi coffee leaves. Three tasks were addressed: binary health status classification, four-class disease or pest damage identification, and binary visible severity classification. A dataset of 550 RGB images was collected from Al-Dayer Governorate, Jazan, under natural field conditions. ResNet50, DenseNet121, and EfficientNet-B0 were evaluated via transfer learning in two phases: a Saudi-only phase and an integrated phase that combined Saudi data with selected JMuBEN and JMuBEN2 samples. In the Saudi-only phase, ResNet50 achieved 96.47% accuracy for binary classification, while DenseNet121 achieved 68.66% and 78.12% for disease and visible severity classification, respectively. In the integrated phase, performance improved to 99.74%, 97.76%, and 97.37%. These integrated-phase results are interpreted as evidence that dataset expansion and increased visual diversity can improve model performance, rather than as definitive estimates of field deployment performance. The results show that binary classification is feasible under limited local data, whereas fine-grained disease classification is more constrained by dataset size and class imbalance. Grad-CAM visualizations were used to support qualitative interpretability and should not be interpreted as biological validation of disease localization. The framework is positioned as a decision-support screening approach that requires further expert-validated, multi-farm, and multi-season evaluation before deployment.
Why it matches plant phenotyping methodsコーヒー葉の画像から健康状態、病害・害虫損傷、可視的重症度を推定する階層的深層学習フレームワークが研究の中心であり、植物病害状態の画像ベース表現型推定に該当する。
abstractThis study designs a hierarchical deep learning framework for screening coffee leaf diseases using field-collected images of Saudi coffee leaves.
Phytophthora cinnamomi is considered as one of the world's worst plant pathogens, infecting about 5,000 plant species including those of agricultural and environmental significance. Disease management is largely dependent on chemical control, particularly synthetic fungicides such as phosphonic acid-based fungicides, e.g., phosphite/potassium phosphonate. While phosphonic-acid-based fungicides have been highly effective for more than 40 years, their prolonged use has led to the development of tolerance and decreased sensitivity in P. cinnamomi . Novel control agents that are effective but environmentally sustainable are therefore urgently needed. RNA-based biopesticides, which use exogenously applied double-stranded RNA (dsRNA) specific to the target pest or pathogen to avoid off-target effects on other organisms in the environment including beneficials, have emerged as a potential novel disease management strategy against P. cinnamomi . Due to the limited availability of bioassays to study the efficacy of this novel control agent against P. cinnamomi , we developed water-based lupin and pineapple bioassays using readily available plastic cups and glassware with mycelial plugs as inoculum. Infection rate was assessed 3 to 7 days post-inoculation (dpi) for lupin and 7 to 14 dpi for pineapple by measuring root lesion length and rating root rot. Potassium phosphonate (Agri Fos 600) and dsRNA were tested as example control agents, with dsRNA uptake tested via northern blotting. The bioassays were found suitable for P. cinnamomi pathogenicity assays, with one mycelial plug an effective inoculum; fungicide sensitivity testing, with doses as low as 0.45 g L -1 Agri Fos® 600 providing protection; and exogenous dsRNA studies targeting root pathogens, with dsRNA able to be taken up by germinating lupin seeds. Overall, the assays are soil-free and thus overcome dsRNA stability issues in the soil and enable the collection of intact clean roots for molecular analyses. Furthermore, the bioassays are non-destructive, allowing root lesion symptoms to be visually monitored and repeatedly measured across different timepoints.
Why it matches plant phenotyping methods植物病害の根病徴を測定する土壌フリー・バイオアッセイを開発し、その適用性を検証しており、表現型取得法が研究の中心です。
abstractwe developed water-based lupin and pineapple bioassays using readily available plastic cups and glassware with mycelial plugs as inoculum.
Abstract Rice and potatoes are major crops in Bangladesh, frequently affected by major disease outbreaks that challenge food security. Inaccurate disease identification often contributes to yield losses. Recently, machine learning garnered much attention in identifying crop diseases. The present study was conducted to develop a deep learning model-based image‑analysis system that automatically identifies key diseases of Bangladeshi rice and potato, and integrates it into a web app to provide farmers with rapid, accurate diagnoses. The system employs a convolutional neural network (CNN) implemented with TensorFlow’s Sequential API, featuring ReLU-activated hidden layers and a Softmax output layer. A dataset of 4,809 images, comprising both healthy and diseased, was collected and processed through pre-processing, feature extraction, and classification. A web-based application was deployed utilizing the Python Streamlit framework. This application integrates the proposed model to predict 2 rice diseases viz. blast ( Magnaporthe oryzae ), bacterial leaf blight ( Xanthomonas campestris ), and 2 potato diseases viz. Early blight (Alternaria solani) and Late blight ( Phytophthora infestans ) from uploaded images, providing a confidence score for the predictions with approximately 92.84% for all detected diseases. The proposed model achieved a training accuracy of 0.9357, a validation accuracy of 0.8983, and a test accuracy of 0.9333. The developed web application indicates strong diagnostic performance for four major diseases, offering Bangladeshi farmers an accessible tool to make timely management decisions.
Why it matches plant phenotyping methodsイネ・ジャガイモ葉の病徴を画像から分類するCNNと実用Webアプリを開発・評価しており、植物の病害状態推定が中心的な方法論的貢献である。
abstractdevelop a deep learning model-based image‑analysis system that automatically identifies key diseases of Bangladeshi rice and potato
Reproduction assets foundThe paper's rice/potato leaf disease image dataset partially comes from Kaggle, and the data availability statement points to PlantVillage for additional image data; both are public image assets used for the paper's CNN phenotyping/disease-classification analysis. No author analysis code, trained model checkpoints, or专Dataset · publicch, M.Y.H. analyzed the data, A.A.J.,
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M.Y.H. and M.S. wrote this manuscript, M.R.I., F.M.A. and S.O.N. reviewed and edited the
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manuscript. All authors have read and agreed to the published version of the manuscript.
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Data availability statement
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Some of the datasets used in this study was obtained from Kaggle
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(https://www.kaggle.com/datasets). Additional datasets used and/or analyzed during the current
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study are available from the corresponding author upon reasonable request. More image data can
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be found at https://www.plantvillage.org/en/plant_images
459Open asset ↗Kagglepdf-raw-page:24 lines:1-57Dataset · publiche manuscript.
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Data availability statement
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Some of the datasets used in this study was obtained from Kaggle
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(https://www.kaggle.com/datasets). Additional datasets used and/or analyzed during the current
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study are available from the corresponding author upon reasonable request. More image data can
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be found at https://www.plantvillage.org/en/plant_images
459Open asset ↗PlantVillagepdf-raw-page:24 lines:1-57Plant phenotyping relevance match · UnverifiedCrossref · checked 15 Sept 2026
Published17 Jun 20262026 3rd International Conference on Integrated Intelligence and Communication Systems (ICIICS)Cited by 0 · OpenAlex ↗
Plant diseases cause a substantial reduction in crop yield, thus affecting food security in the farming industry. The timely discovery and precise diagnosis of the diseases on tomato leaves is very important to take corrective measures. This paper proposes FusionNet, that combines several backbones for identifying diseases on the leaves of tomatoes. The proposed model combines the complementary feature learning capabilities of MobileNetV3-Small, SE-ResNet50, and ECAResNet50d through a concatenation-based fusion approach to comprehensively learn fine-grained texture details, global contextual semantics, and channel-attentive information. The proposed framework is evaluated on a curated dataset of$\mathbf{1 8, 1 6 0}$images from ten classes. To guarantee statistical significance, 5fold cross-validation with two separate runs per fold is conducted, achieving a mean validation accuracy of$99.30 \% \pm \mathbf{0. 1 9 \%}$, indicating sTable generalization. To validate the fusion strategy, t-SNE visualizations show enhanced inter-class separation as well as intra-class compactness in the fused feature space compared to the individual backbones. Cosine similarity analysis also confirms a decrease in inter-class correlation and an improvement in the discriminative structure. The experimental results show that FusionNet achieves robust, reliable, and highly discriminative performance for automated plant disease diagnosis in precision agriculture applications.
Why it matches plant phenotyping methodsトマト葉の画像から病害状態を推定する深層学習手法を開発・評価しており、植物病害フェノタイピングが中心である。
abstractThis paper proposes FusionNet, that combines several backbones for identifying diseases on the leaves of tomatoes.
Abstract Mild stress is often difficult to distinguish from non-stress signals that may even mask the detection of stress; therefore, early diagnosis and precision grading of plant/microbial stress severity are essential for sustainable precision agriculture toward achieving optimized yields. We propose an interpretable hybrid deep learning–fuzzy decision framework combining EfficientNet B7 and Inception-ResNet-v2 with multiscale feature aggregation integrating Sparse Pyramid Pool (SPP) and Atrous Spatial Pyramid Pooling (ASPP). A Gaussian-based fuzzy inference system is incorporated to derive severity reasoning in a linguistically interpretable manner to address uncertainty and overlapping stress stages. Unlike conventional approaches evaluated only on controlled datasets, the proposed framework is validated through stringent cross-dataset generalization between the PlantVillage and PlantDoc datasets. The model demonstrates robustness under environmental disturbances and passes statistical significance tests. On the PlantVillage benchmark, the framework achieves an exact-match accuracy of $97.82\%$, a macro F1-score of $97.60\%$, and an AUC of $0.979$. When evaluated across a different domain, the performance decreases by only $4.8\%$, indicating strong generalization capability. The integration of fuzzy logic reduces adjacent-class error by $3.4\%$ and improves probability calibration with an Expected Calibration Error (ECE) of $0.021$. Grad-CAM visualizations and saliency analyses further confirm that the model focuses on biologically relevant diseased regions. These results demonstrate that combining multiscale deep feature learning with structured fuzzy reasoning enhances robustness, interpretability, and decision stability, thereby supporting human-centered agricultural monitoring systems.
Why it matches plant phenotyping methods植物のストレス重症度を画像から推定する深層学習・ファジー推論手法を開発し、異なるデータセット間で検証しているため、植物フェノタイピング手法が中心である。
abstractWe propose an interpretable hybrid deep learning–fuzzy decision framework
Reproduction assets foundThe paper's plant-phenotyping measurements rely on two public leaf-image datasets, PlantVillage and PlantDoc, both cited with explicit public URLs in the supplied text. No author analysis code, trained models, or code deposit is mentioned.Dataset · publicthe proposed model was validated
on the PlantDoc dataset1 , a publicly available real-field plant disease dataset
that reflects practical agricultural variability.Open asset ↗pdf-page:19 lines:1-53Plant phenotyping relevance match · UnverifiedCrossref · Europe PMC · checked 5 Sept 2026
Plant diseases result in the estimated loss of 20–40% of the world’s crop production annually, amounting to more than $220 billion in economic losses and threatening food security for a rapidly expanding world population. While the conventional methods for detecting plant diseases rely on visual inspection of the symptoms, they are resource-consuming. For effective plant disease detection at a pre-mature stage, hyperspectral imaging (HSI) represents a paradigm shift in technology. It can be used to obtain subtle spectral signatures outside the visible spectrum, which enables pre-symptomatic and highly specific plant disease diagnosis. Concurrently, deep learning (DL) has become the prevalent analytical paradigm for decoding the complex and high-dimensional data that HSI produces. This paper covers a comprehensive narrative review of the intersection of these two transformative technologies from 2008 to 2026. We first set out the biological and physical principles by which HSI is uniquely suited to detecting plant–pathogen interactions in the absence of visible symptoms. We then present a detailed taxonomy of deep learning architectures for Vision Imaging and HSI data, ranging from basic 1D and 3D convolutional neural networks (CNNs) to hybrid models with attention mechanisms and, most recently, vision transformers, which have achieved greater robustness to real-world conditions. There is currently a major and consistent “lab-to-field” performance gap. A critical analysis of various studies reveals a persistent and significant performance gap between models that perform well on controlled lab datasets (ranging from 95 to 99%) and field-collected data (typically 70–85%). This paper also addresses the practical gap of environmental variability, image noise, and the domain gap between the controlled environment and the real dataset. Finally, this review concludes by providing strategic research recommendations and a roadmap, highlighting that the future of the field is contingent upon not only architectural innovation but also a holistic approach, with robustness, scalability, affordability, and interpretability as the main focus to bring the proven potential of HSI-DL systems from the lab to the field, ultimately contributing to global food security.
Why it matches plant phenotyping methods植物病害の症状・状態をハイパースペクトル画像と深層学習で推定する手法を中心に扱うレビューであり、植物フェノタイピング手法レビューに該当する。
abstractThis paper covers a comprehensive narrative review of the intersection of these two transformative technologies from 2008 to 2026.
The precise and timely identification of apple leaf diseases play a key role in targeted pesticide application in orchards. Conventional deep learning techniques encounter issues like the substantial size of model parameters and low detection accuracy across various disease scales in natural environments. To overcome these limitations, this paper presents YOLO-APLD, a lightweight algorithm for detecting apple leaf diseases, utilizing the improved YOLOv8n model. The proposed model incorporates four key improvements to enhance its detection performance. First, an EP-C2f enhancement module is embedded at the output of the backbone to strengthen the representation of local and structural features of damaged area, thereby achieving significant improvements in the recognition of morphologically complex diseases such as rust. Additionally, spatial intersection over union (SIoU) loss and focal loss are combined to form Focal-SIoU loss, which simultaneously optimizes bounding box regression and classification, thus enhancing the detection stability for hard-to-distinguish samples and few-shot categories including mosaic and brown spot. Meanwhile, a bidirectional feature pyramid network is adopted in the neck for efficient multiscale feature fusion, which strengthens the perceptual capability for both large-scale damaged area (powdery mildew and scab) and small-scale damaged area (Alternaria blotch and gray spot). Finally, a Slim-neck structure is employed to simplify the feature fusion architecture, reducing model size and accelerating inference speed. Comprehensive experiments demonstrate that YOLO-APLD achieves excellent performance while maintaining real-time capability, with precision, recall, mean average precision, and F1-score reaching 88.5, 84.3, 88.5, and 86.4%, respectively. Compared with YOLOv8n, these metrics show respective improvements of 1.7, 1.5, 0.8, and 1.6%. Meanwhile, floating point operations, parameter count, and model size are reduced by 22.2, 23.3, and 17.5%, respectively. The detection frame rate on edge computing devices reaches 90.3 f/s, indicating significantly accelerated inference speed. Additionally, testing performance on grape and tomato datasets further validates the generality of the proposed method. In summary, YOLO-APLD exhibits strong detection performance in the field of apple leaf disease detection and can provide practical technical support for precision pesticide application in orchards and on-site disease monitoring.
Why it matches plant phenotyping methodsリンゴ葉の病斑・病害状態を画像から検出するYOLOベース手法を開発・評価しており、植物病害表現型の取得が研究の中心である。
abstractComprehensive experiments demonstrate that YOLO-APLD achieves excellent performance while maintaining real-time capability