J.J.W. and E.M.; data curation and visualisation: J.J.W. writing original draft: all authors; writing, review and editing: J.J.W. and S.N.; funding acquisition: S.N. Competing interests: The authors declare no conflict of interest. Data Availability All code used to create and run the programmable bots is available on GitHub ( https://github.com/Walshj73/data-processing-bot.git ) and licensed under the MIT license. All 262 studies found during this SLR process are available in a publicly accessible Zotero group library (titled “Advancements in Imaging Sensors and AI for Plant Stress Detection”). The group library can be accessed on Zotero by using the “Search for groups” feature found under
Open resource ↗Walshj73/data-processing-bot · lines:160-199Unverified paper record
Advancements in Imaging Sensors and AI for Plant Stress Detection: A Systematic Literature Review.
Plant Phenomics · 1 Jan 2024 · 10.34133/plantphenomics.0153
Abstract
Integrating imaging sensors and artificial intelligence (AI) have contributed to detecting plant stress symptoms, yet data analysis remains a key challenge. Data challenges include standardized data collection, analysis protocols, selection of imaging sensors and AI algorithms, and finally, data sharing. Here, we present a systematic literature review (SLR) scrutinizing plant imaging and AI for identifying stress responses. We performed a scoping review using specific keywords, namely abiotic and biotic stress, machine learning, plant imaging and deep learning. Next, we used programmable bots to retrieve relevant papers published since 2006. In total, 2,704 papers from 4 databases (Springer, ScienceDirect, PubMed, and Web of Science) were found, accomplished by using a second layer of keywords (e.g., hyperspectral imaging and supervised learning). To bypass the limitations of search engines, we selected OneSearch to unify keywords. We carefully reviewed 262 studies, summarizing key trends in AI algorithms and imaging sensors. We demonstrated that the increased availability of open-source imaging repositories such as PlantVillage or Kaggle has strongly contributed to a widespread shift to deep learning, requiring large datasets to train in stress symptom interpretation. Our review presents current trends in AI-applied algorithms to develop effective methods for plant stress detection using image-based phenotyping. For example, regression algorithms have seen substantial use since 2021. Ultimately, we offer an overview of the course ahead for AI and imaging technologies to predict stress responses. Altogether, this SLR highlights the potential of AI imaging in both biotic and abiotic stress detection to overcome challenges in plant data analysis.
Plant phenotyping relevance
植物ストレス検出のための画像センサーとAI手法を体系的にレビューしており、植物表現型取得・解析手法が中心である。
abstractOur review presents current trends in AI-applied algorithms to develop effective methods for plant stress detection using image-based phenotyping.
abstractWe carefully reviewed 262 studies, summarizing key trends in AI algorithms and imaging sensors.
Code and data availability
The paper's authors publicly released the programmable-bot Python code used to conduct the systematic literature review's database searches and data processing, with explicit availability language and a GitHub URL. The Zotero group library of 262 studies is public but has no URL in the allowed list; Kaggle/Zindi/Spectr
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