Advanced deep learning models for phenotypic trait extraction and cultivar classification in lychee using photon-counting micro-CT imaging.

Abstract

Introduction In contemporary agronomic research, the focus has increasingly shifted towards non-destructive imaging and precise phenotypic characterization. A photon-counting micro-CT system has been developed, which is capable of imaging lychee fruit at the micrometer level and capturing a full energy spectrum, thanks to its advanced photon-counting detectors. Methods For automatic measurement of phenotypic traits, seven CNN-based deep learning models including AttentionUNet, DeeplabV3+, SegNet, TransUNet, UNet, UNet++, and UNet3+ were developed. Machine learning techniques tailored for small-sample training were employed to identify key characteristics of various lychee species. Results These models demonstrate outstanding performance with Dice, Recall, and Precision indices predominantly ranging between 0.90 and 0.99. The Mean Intersection over Union (MIoU) consistently falls between 0.88 and 0.98. This approach served both as a feature selection process and a means of classification, significantly enhancing the study's ability to discern and categorize distinct lychee varieties. Discussion This research not only contributes to the advancement of non-destructive plant analysis but also opens new avenues for exploring the intricate phenotypic variations within plant species.

Plant phenotyping relevance

ライチ果実のマイクロCT画像から表現型形質を自動抽出する深層学習モデルを開発・評価しており、フェノタイピング手法が研究の中心です。

Code and data availability

The supplied article blocks describe lychee micro-CT imaging, seven CNN segmentation models, and machine-learning classification, but contain no data availability statement, public dataset deposit, or author code repository with a URL. The only URL present (arXiv TransUNet reference) is cited prior work, not a paper-­‐

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