Early detection and severity classification of verticillium wilt in cotton stems using Raman spectroscopy and machine learning.

Abstract

The early detection of Verticillium wilt (VW) in cotton is a critical challenge in agricultural disease management. Cotton, a vital global textile resource, is severely threatened by this devastating disease. Traditional diagnostic methods, which often rely on manual expertise or destructive sampling, are limited by low efficiency and high subjectivity. In recent years, Raman spectroscopy has emerged as a promising solution due to its rapid, non-destructive, and highly sensitive characteristics for plant disease detection. In this study, we analyzed cotton stems using Raman spectroscopy, applying Savitzky-Golay (SG) smoothing combined with multiple preprocessing methods including Scaling and Shifting (SS), Standard Normal Variate (SNV), inverse first-order differential (1/SG)', and multiplicative scatter correction (MSC). For baseline correction, we employed polynomial fitting (PolyFit) and adaptive iterative weighted penalized least squares (airPLS). Feature selection was performed using principal component analysis (PCA), successive projection algorithm (SPA), and competitive adaptive reweighted sampling (CARS).Three optimized models were developed: support vector machine (SVM) with weighted mean of vectors (INFO) algorithm, random forest (RF) enhanced by particle swarm optimization (PSO), and long short-term memory (LSTM) network optimized via chameleon swarm algorithm (CSA).The results show that the INFO-SVM model with SG-airPLS-(1/SG)' -CARS preprocessing demonstrated superior performance, achieving 97.5% accuracy (0.974 F1-score) on training data and 90.0% accuracy (0.867 F1-score) on validation data, outperforming both PSO-RF and CSA-LSTM models. These results confirm that Raman spectroscopy integrated with optimized machine learning enables accurate VW classification in cotton stems. This method enables early disease detection during infection, facilitating timely fungicide application and reducing yield losses.

Plant phenotyping relevance

ランダ分光と機械学習により、ワタ茎の病徴・萎凋病の早期検出および重症度分類を開発・検証しており、植物状態の取得手法が研究の中心である。

Code and data availability

The article describes Raman spectral data collection and machine learning analysis of cotton stem Verticillium wilt, but no public repository, accession number, code URL, or dataset link is provided in any supplied block. The Data Availability Statement only says datasets are in online repositories with names/accession

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