Measuring metabolic rates of small terrestrial organisms by fluorescence-based closed-system respirometry.

Abstract

We explore a recent, innovative variation of closed-system respirometry for terrestrial organisms, whereby oxygen partial pressure ( P O 2 ) is repeatedly measured fluorometrically in a constant-volume chamber over multiple time points. We outline a protocol that aligns this technology with the broader literature on aerial respirometry, including the calculations required to accurately convert O 2 depletion to metabolic rate (MR). We identify a series of assumptions, and sources of error associated with this technique, including thresholds where O 2 depletion becomes limiting, that impart errors to the calculation and interpretation of MR. Using these adjusted calculations, we found that the resting MR of five species of angiosperm seeds ranged from 0.011 to 0.640 ml g -1 h -1 , consistent with published seed MR values. This innovative methodology greatly expands the lower size limit of terrestrial organisms that can be measured, and offers the potential for measuring MR changes over time as a result of physiological processes of the organism.

Plant phenotyping relevance

蛍光式閉鎖系呼吸測定法のプロトコル、計算補正、誤差要因を開発・検証し、植物種子の代謝率という生理形質を測定しているため、植物フェノタイピング手法が中心です。

Code and data availability

The paper's authors developed an annotated R script (Script 1) that automates their metabolic-rate calculations from Q2 fluorometric respirometry data, and it is explicitly stated to be available in the journal's supplementary material, which is publicly accessible at the supplemental URL. The seed respirometry raw/rep