GreenLeafVI: A FIJI Plugin for High-Throughput Analysis of Leaf Chlorophyll Content.

Abstract

Chlorophyll breakdown is a central process during plant senescence or stress responses, and leaf chlorophyll content is therefore a strong predictor of plant health. Chlorophyll quantification can be done in several ways, most of which are time-consuming or require specialized equipment. A simple alternative to these methods is the use of image-based chlorophyll estimation, which uses the color values in RGB images to calculate colorimetric visual indexes as a measure of the leaf chlorophyll content. Image-based chlorophyll measurement is non-destructive and requires no specialized equipment, apart from a digital camera. Here, we developed the ImageJ plugin Green Leaf Visual Index that facilitates high-throughput image analysis for quantifying leaf chlorophyll content. Our plugin offers the option to white-balance images to decrease variation between images and has an optional background removal step. We show that this method can reliably quantify leaf chlorophyll content in a variety of plant species. In addition, we show that image-based chlorophyll quantification can replicate Genome-Wide Association Study results based on traditional chlorophyll extraction methods, showing that this method is highly accurate.

Plant phenotyping relevance

葉のクロロフィル含量を画像から推定するFIJIプラグインを開発し、複数植物種で信頼性と従来法との一致を検証しており、植物表現型取得法が中心である。

Code and data availability

The paper's authors publicly released the GreenLeafVI FIJI plugin source code and documentation on GitHub, which is the computational tool used for the paper's image-based chlorophyll phenotyping. The underlying phenotype/trait datasets (RGB image measurements and chlorophyll extraction values) are not publicly posted;