Unsupervised Methodology for Large-Scale Tree Seedling Mapping in Diverse Forestry Settings Using UAV-Based RGB Imagery

Abstract

Mapping and monitoring tree seedlings is essential for reforestation and restoration efforts. However, achieving this on a large scale, especially during the initial stages of growth, when seedlings are small and lack distinct morphological features, can be challenging. An accurate, reliable, and efficient method that detects seedlings using unmanned aerial vehicles (UAVs) could significantly reduce survey costs. In this study, we used an unsupervised approach to map young conifer seedlings utilising spatial, spectral, and structural information from UAV digital aerial photogrammetric (UAV-DAP) point clouds. We tested our method across eight trial stands of radiata pine with a wide height range (0.4–6 m) that comprised a total of ca. 100 ha and spanned diverse site conditions. Using this method, seedling detection was excellent, with an overall precision, sensitivity, and F1 score of 95.2%, 98.0%, and 96.6%, respectively. Our findings demonstrated the importance of combining spatial, spectral, and structural metrics for seedling detection. While spectral and structural metrics efficiently filtered out non-vegetation objects and weeds, they struggled to differentiate planted seedlings from regenerating ones due to their similar characteristics, resulting in a large number of false positives. The inclusion of a row segment detection algorithm overcame this limitation and successfully identified most regenerating seedlings, leading to a significant reduction in false positives and an improvement in overall detection accuracy. Our method generated vector files containing seedling positions and key structural characteristics (seedling height, crown dimensions), offering valuable outputs for precision management. This automated pipeline requires fewer resources and user inputs compared to manual annotations or supervised techniques, making it a rapid, cost-effective, and scalable solution which is applicable without extensive training data. While serving as primarily a standalone tool for assessing forestry projects, the proposed method can also complement supervised seedling detection methods like machine learning, i.e., by supplementing training datasets.

Plant phenotyping relevance

UAV画像・点群から樹木幼苗を検出し、位置および樹高・樹冠寸法を推定する自動化手法の開発と検証が研究の中心であるため、植物フェノタイピング手法として含める。

Code and data availability

The supplied blocks describe UAV-DAP point clouds, annotated seedling datasets, and an R-based pipeline, but contain no data availability statement, repository deposit, or public URL for the imagery, annotations, or analysis code. No paper-specific public asset is evidenced.

No evidence-backed public reproduction asset is currently recorded.