the Discussion that re- conciles the anisotropy of clones with the conformal model. A.1. Data and data-analysis programs The two papers from Prof. Rolland-Lagan's laboratory, (Re- mmler and Rolland-Lagan, 2012; Rolland-Lagan et al., 2014), give a thorough description of growth patterns and point the reader to- wards a website (http://hdl.handle.net/10393/30401) where the bead data for individual leaves are available, and also a package of Matlab programs for leaf shape analysis. Leaves are referred to by pot and plant numbers in their data sets, and Table A1 shows how this relates to the numbering used here. A.2. Complex functions and their derivatives Let f be a complex analytic fun
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Conformal growth of Arabidopsis leaves.
Journal of theoretical biology · 16 Aug 2016 · 10.1016/j.jtbi.2016.08.023
Abstract
I show that Arabidopsis leaf growth can be described with good precision by a conformal map, where expansion is locally isotropic (the same in all directions) but the amount of expansion can vary with position. Data obtained by tracking leaf growth over time can be reproduced with almost 90% accuracy by such a map. The growth follows a Möbius transformation, which is a type of conformal map that would arise if there were an underlying linear gradient of growth rate. From the data one can derive the parameters that describe this linear gradient and show how it changes over time. Such a rule has the property of maintaining the flatness of a leaf.
Plant phenotyping relevance
葉の経時追跡データから成長を定量化し、成長勾配パラメータを推定する数理モデルが研究の中心であり、植物成長表現型の抽出手法に該当する。
abstractData obtained by tracking leaf growth over time can be reproduced with almost 90% accuracy by such a map.
abstractFrom the data one can derive the parameters that describe this linear gradient and show how it changes over time.
Code and data availability
The paper's analysis is built on publicly available Arabidopsis leaf bead-tracking data (from Remmler & Rolland-Lagan 2012 and Rolland-Lagan et al. 2014), which the authors state are deposited with a package of Matlab leaf-shape analysis programs at a public repository handle. This is a paper-specific, publicly and行动可及
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