Multi-Temporal Point Cloud Alignment for Accurate Height Estimation of Field-Grown Leafy Vegetables

Abstract

Accurate measurement of plant height in leafy vegetables is challenging due to their short stature, high planting density, and severe canopy occlusion during later growth stages. These factors often limit the reliability of single-plant monitoring across the full growth cycle in open-field environments. To address this, we propose a multi-temporal point cloud alignment method for accurate plant height measurement, focusing on Choy Sum (Brassica rapa var. parachinensis). The method estimates plant height by calculating the vertical distance between the canopy and the ground. Multi-temporal point cloud maps are reconstructed using an enhanced Oriented FAST and Rotated BRIEF–Simultaneous Localization and Mapping (ORB-SLAM3) algorithm. A fixed checkerboard calibration board, leveled using a spirit level, ensures proper vertical alignment of the Z-axis and unifies coordinate systems across growth stages. Ground and plant points are separated using the Excess Green (ExG) index. During early growth stages, when the soil is minimally occluded, ground point clouds are extracted and used to construct a high-precision reference ground model through Cloth Simulation Filtering (CSF) and Kriging interpolation, compensating for canopy occlusion and noise. In later growth stages, plant point cloud data are spatially aligned with this reconstructed ground surface. Individual plants are identified using an improved Euclidean clustering algorithm, and consistent measurement regions are defined. Within each region, a ground plane is fitted using the Random Sample Consensus (RANSAC) algorithm to ensure alignment with the X–Y plane. Plant height is then determined by the elevation difference between the canopy and the interpolated ground surface. Experimental results show mean absolute errors (MAEs) of 7.19 mm and 18.45 mm for early and late growth stages, respectively, with coefficients of determination (R2) exceeding 0.85. These findings demonstrate that the proposed method provides reliable and continuous plant height monitoring across the full growth cycle, offering a robust solution for high-throughput phenotyping of leafy vegetables in field environments.

Plant phenotyping relevance

葉菜類の草丈を取得するための点群位置合わせ・地面復元・個体抽出・高さ推定手法を開発し、誤差と決定係数で検証している。植物フェノタイピング手法が研究の中心である。

Code and data availability

The supplied blocks describe the phenotyping method (RGB-D point cloud reconstruction, plant height estimation for Choy Sum) but contain no data availability statement, no public dataset, image, or code deposit, and no author-provided public URL for paper-specific assets.

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