Image features and DUS testing traits for peanut pod variety identification and pedigree analysis.

Abstract

Background DUS (Distinctness, Uniformity and Stability) testing of new varieties is an important method for peanut germplasm evaluation and identification of varieties. In order to verify the feasibility of variety identification for peanut DUS testing based on image processing, 2000 peanut pod images from 20 varieties were obtained by a scanner. Initially, six DUS testing traits were quantified using a mathematical method based on image processing technology, and then, size, shape, color and texture features (total 31) were also extracted. Next, the Fisher algorithm was used as a feature selection method to select 'good' features from the extracted features to expand the DUS testing traits set. Finally, support vector machine (SVM) and K-means algorithm were respectively used as recognition model and clustering method for variety identification and pedigree clustering. Results By the Fisher selection method, a number of significant candidate features for DUS testing were selected which can be used in the DUS testing further; using the top half of these features (about 18) ordered by Fisher discrimination ability, the recognition rate of SVM model was found to be more than 90%, which was better than unordered features. In addition, a pedigree clustering tree of 20 peanut varieties was built based on the K-means clustering method, which can be used in deeper studies of the genetic relationship of different varieties. Conclusion This article can provide a novel reference method for future DUS testing, peanut varieties identification and study of peanut pedigree. © 2018 Society of Chemical Industry.

Plant phenotyping relevance

ピーナッツ莢画像からDUS形質を定量化し、特徴選択・認識・クラスタリングによる品種識別手法を開発・評価しており、表現型取得と解析が研究の中心である。

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