The Plant Pathology Challenge 2020 data set to classify foliar disease of apples.

Abstract

Premise Apple orchards in the United States are under constant threat from a large number of pathogens and insects. Appropriate and timely deployment of disease management depends on early disease detection. Incorrect and delayed diagnosis can result in either excessive or inadequate use of chemicals, with increased production costs and increased environmental and health impacts. Methods and results We have manually captured 3651 high-quality, real-life symptom images of multiple apple foliar diseases, with variable illumination, angles, surfaces, and noise. A subset of images, expert-annotated to create a pilot data set for apple scab, cedar apple rust, and healthy leaves, was made available to the Kaggle community for the Plant Pathology Challenge as part of the Fine-Grained Visual Categorization (FGVC) workshop at the 2020 Computer Vision and Pattern Recognition conference (CVPR 2020). Participants were asked to use the image data set to train a machine learning model to classify disease categories and develop an algorithm for disease severity quantification. The top three area under the ROC curve (AUC) values submitted to the private leaderboard were 0.98445, 0.98182, and 0.98089. We also trained an off-the-shelf convolutional neural network on this data for disease classification and achieved 97% accuracy on a held-out test set. Discussion This data set will contribute toward development and deployment of machine learning-based automated plant disease classification algorithms to ultimately realize fast and accurate disease detection. We will continue to add images to the pilot data set for a larger, more comprehensive expert-annotated data set for future Kaggle competitions and to explore more advanced methods for disease classification and quantification.

Plant phenotyping relevance

リンゴ葉の病害症状画像データセットを構築し、病害分類と重症度定量化アルゴリズムを評価する研究であり、植物病害表現型の取得・推定が中心です。

Code and data availability

The paper's expert-annotated apple foliar disease image dataset (3651 images) is publicly available on Kaggle, and the authors' disease classification algorithm (ResNet50-based CNN) is available on GitHub, both explicitly stated in the Data Availability section.