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High-fidelity wheat plant reconstruction using 3D Gaussian splatting and neural radiance fields

GigaScience · 1 Jan 2025 · 10.1093/gigascience/giaf022

Abstract

BACKGROUND: The reconstruction of 3-dimensional (3D) plant models can offer advantages over traditional 2-dimensional approaches by more accurately capturing the complex structure and characteristics of different crops. Conventional 3D reconstruction techniques often produce sparse or noisy representations of plants using software or are expensive to capture in hardware. Recently, view synthesis models have been developed that can generate detailed 3D scenes, and even 3D models, from only RGB images and camera poses. These models offer unparalleled accuracy but are currently data hungry, requiring large numbers of views with very accurate camera calibration. RESULTS: In this study, we present a view synthesis dataset comprising 20 individual wheat plants captured across 6 different time frames over a 15-week growth period. We develop a camera capture system using 2 robotic arms combined with a turntable, controlled by a re-deployable and flexible image capture framework. We trained each plant instance using two recent view synthesis models: 3D Gaussian splatting (3DGS) and neural radiance fields (NeRF). Our results show that both 3DGS and NeRF produce high-fidelity reconstructed images of a plant subject from views not captured in the initial training sets. We also show that these approaches can be used to generate accurate 3D representations of these plants as point clouds, with 0.74-mm and 1.43-mm average accuracy compared with a handheld scanner for 3DGS and NeRF, respectively. CONCLUSION: We believe that these new methods will be transformative in the field of 3D plant phenotyping, plant reconstruction, and active vision. To further this cause, we release all robot configuration and control software, alongside our extensive multiview dataset. We also release all scripts necessary to train both 3DGS and NeRF, all trained models data, and final 3D point cloud representations. Our dataset can be accessed via https://plantimages.nottingham.ac.uk/ or https://https://doi.org/10.5524/102661. Our software can be accessed via https://github.com/Lewis-Stuart-11/3D-Plant-View-Synthesis.

Plant phenotyping relevance

3D植物表現型取得のための撮影システム、再構成手法、データセットを開発し、スキャナとの精度比較で検証しているため、方法が中心的である。

abstractWe develop a camera capture system using 2 robotic arms combined with a turntable, controlled by a re-deployable and flexible image capture framework.
abstractWe also show that these approaches can be used to generate accurate 3D representations of these plants as point clouds, with 0.74-mm and 1.43-mm average accuracy compared with a handheld scanner for 3DGS and NeRF, respectively.
abstractIn this study, we present a view synthesis dataset comprising 20 individual wheat plants captured across 6 different time frames over a 15-week growth period.

Code and data availability

The paper releases its wheat plant multiview image dataset (via plantimages.nottingham.ac.uk and GigaDB DOI 10.5524/102661), its authors' analysis/capture codebase on GitHub (3D-Plant-View-Synthesis), a Software Heritage archive of that code, and a DOME-ML registry annotation. All are paper-specific, public, and have作者

Codepublic

ruction output across all plants. We hope that our study will provide opportunities for researchers exploring new and improved 3D phenotyping algorithms, 3D reconstruction and view synthesis research, and active vision systems. Availability of Source Code and Requirements Project name: 3D Plant View Synthesis: Project homepage: https://github.com/Lewis-Stuart-11/3D-Plant-View-Synthesis [ 13 ] Operating system(s): Windows, Ubuntu Programming language: Python (>=3.8) License: Apache 2.0 Any restrictions to use by nonacademics: None Our code has also been archived in Software Heritage [ 66 ]. Functionality, such as Robotic View Capturing, 3DGS to Point Cloud, and our UR5 Configs files, are stor

Open resource ↗GitHub · Lewis-Stuart-11/3D-Plant-View-Synthesis · lines:663-695

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