Plant species richness prediction from DESIS hyperspectral data: A comparison study on feature extraction procedures and regression models

Abstract

The diversity of terrestrial vascular plants plays a key role in maintaining the stability and productivity of ecosystems. Airborne hyperspectral imaging has shown promise for measuring plant diversity remotely, but to operationalise these efforts over large regions we need to advance satellite-based alternatives. The advanced spectral and spatial specification of the recently launched DESIS (the DLR Earth Sensing Imaging Spectrometer) instrument provides a unique opportunity to test the potential for monitoring plant species diversity with spaceborne hyperspectral data. This study provides a quantitative assessment on the ability of DESIS hyperspectral data for predicting plant species richness in two different habitat types in southeast Australia. Spectral features were first extracted from the DESIS spectra, then regressed against on-ground estimates of plant species richness, with a two-fold cross validation scheme to assess the predictive performance. We tested and compared the effectiveness of Principal Component Analysis (PCA), Canonical Correlation Analysis (CCA), and Partial Least Squares analysis (PLS) for feature extraction, and Kernel Ridge Regression (KRR), Gaussian Process Regression (GPR), and Random Forest Regression (RFR) for species richness prediction. The best prediction results were $r=0.76$ and $\text{RMSE}=5.89$ for the Southern Tablelands region, and $r=0.68$ and $\text{RMSE}=5.95$ for the Snowy Mountains region. Relative importance analysis for the DESIS spectral bands showed that the red-edge, red, and blue spectral regions were more important for predicting plant species richness than the green bands and the near-infrared bands beyond red-edge. We also found that the DESIS hyperspectral data performed better than Sentinel-2 multispectral data in the prediction of plant species richness.

Plant phenotyping relevance

DESISハイパースペクトルデータから植物種数を推定する特徴抽出・回帰手法を比較し、交差検証で性能評価しており、植物フェノタイピング手法が中心である。

Code and data availability

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