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From Selfies to Science - Precise 3D Leaf Measurement with iPhone 13 and Its Implications for Plant Development and Transpiration

bioRxiv · 30 Dec 2023 · 10.1101/2023.12.30.573617

Abstract

Advanced smartphone technology now integrates sophisticated sensors, increasing access to high-precision data acquisition. This study tested the hypothesis that the iPhone 13-Pro camera, with LiDAR technology, can accurately estimate maize leaf surface area (Zea mays). 3D point cloud models enabled non-destructive data collection, and four methods for canopy area extraction were evaluated in relation to plant transpiration rates. Results showed a strong correlation (R 2 =0.92, RMSE=49.78) between manually scanned and iPhone-estimated plant surface areas. Additionally, the stem-to-plant surface area ratio was found to be 12.3% (R 2 =0.9, RMSE=28.42). Using this ratio to predict canopy area showed a significant correlation (R 2 =0.83) with actual canopy measurements. The iPhone’s surface area measurement tool offers an advantage by scanning the entire plant surface, unlike traditional leaf area index measurements, which often cannot penetrate the canopy. Moreover, real-size surface measurement of the canopy correlated strongly (R 2 =0.83) with whole canopy transpiration rates measured gravimetrically. This study introduces a novel method for analyzing 3D plant traits using a portable, affordable, and accurate tool, which has the potential to enhance plant breeding and agricultural practices. 0. How to Use This Template The template details the sections that can be used in a manuscript. Note that each section has a corresponding style, which can be found in the “Styles” menu of Word. Sections that are not mandatory are listed as such. The section titles given are for articles. Review papers and other article types have a more flexible structure. Remove this paragraph and start section numbering with 1. For any questions, please contact the editorial office of the journal or support@mdpi.com .

Plant phenotyping relevance

iPhoneのLiDARと3D点群を用いてトウモロコシの葉・植物表面積を推定する手法を開発・検証しており、植物形質の取得が研究の中心である。

abstractThis study tested the hypothesis that the iPhone 13-Pro camera, with LiDAR technology, can accurately estimate maize leaf surface area (Zea mays).
abstract3D point cloud models enabled non-destructive data collection, and four methods for canopy area extraction were evaluated in relation to plant transpiration rates.
abstractThis study introduces a novel method for analyzing 3D plant traits using a portable, affordable, and accurate tool

Code and data availability

The paper states that all statistical code and data files for the maize 3D leaf phenotyping analysis are publicly available in the authors' GitHub repository.

Codepublic

conducted using the “scipy” package’s “f_oneway” 12 function [18]. The Python packages “pandas” [19] and “numpy” [20] were used to arrange the 13 data before plotting. The Python packages “matplotlib”, “seaborn” [21] were used for data 14 visualization. All statistical code and data files needed are available to download 15 at https://github.com/gavrielbs/3D_Corn_Phenotype. 16 17 PlantArray System by Plant-DiTech LTD 18 PlantArray is a high-throughput, multi-sensor physiological phenotyping gravimetric 19 platform. This plant phenotyping system performs quick plant screening based on precise 20 physiology traits measurements that are great indicators for yield potential with proven high 21 c

Open resource ↗gavrielbs/3D_Corn_Phenotype · pdf-layout-page:4 lines:1-44

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