Optimization of the Canopy Three-Dimensional Reconstruction Method for Intercropped Soybeans and Early Yield Prediction

Abstract

Intercropping is a key cultivation strategy for safeguarding national food and oil security. Accurate early-stage yield prediction of intercropped soybeans is essential for the rapid screening and breeding of high-yield soybean varieties. As a widely used technique for crop yield estimation, the accuracy of 3D reconstruction models directly affects the reliability of yield predictions. This study focuses on optimizing the 3D reconstruction process for intercropped soybeans to efficiently extract canopy structural parameters throughout the entire growth cycle, thereby enhancing the accuracy of early yield prediction. To achieve this, we optimized image acquisition protocols by testing four imaging angles (15°, 30°, 45°, and 60°), four plant rotation speeds (0.8 rpm, 1.0 rpm, 1.2 rpm, and 1.4 rpm), and four image acquisition counts (24, 36, 48, and 72 images). Point cloud preprocessing was refined through the application of secondary transformation matrices, color thresholding, statistical filtering, and scaling. Key algorithms—including the convex hull algorithm, voxel method, and 3D α-shape algorithm—were optimized using MATLAB, enabling the extraction of multi-dimensional canopy parameters. Subsequently, a stepwise regression model was developed to achieve precise early-stage yield prediction for soybeans. The study identified optimal image acquisition settings: a 30° imaging angle, a plant rotation speed of 1.2 rpm, and the collection of 36 images during the vegetative stage and 48 images during the reproductive stage. With these improvements, a high-precision 3D canopy point-cloud model of soybeans covering the entire growth period was successfully constructed. The optimized pipeline enabled batch extraction of 23 canopy structural parameters, achieving high accuracy, with linear fitting R2 values of 0.990 for plant height and 0.950 for plant width. Furthermore, the voxel volume-based prediction approach yielded a maximum yield prediction accuracy of R2 = 0.788. This study presents an integrated 3D reconstruction framework, spanning image acquisition, point cloud generation, and structural parameter extraction, effectively enabling early and precise yield prediction for intercropped soybeans. The proposed method offers an efficient and reliable technical reference for acquiring 3D structural information of soybeans in strip intercropping systems and contributes to the accurate identification of soybean germplasm resources, providing substantial theoretical and practical value.

Plant phenotyping relevance

インタクロップ大豆の3D画像取得・点群処理・形質抽出パイプラインを中心に最適化し、構造形質の精度検証と収量予測まで行っているため、植物フェノタイピング手法研究に該当する。

Code and data availability

The supplied blocks describe a custom imaging platform, MATLAB/Colmap/CloudCompare pipeline, and stepwise regression yield model, but contain no public dataset, image, or code deposit; no availability statement or authors' public URL for paper-specific assets appears.

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