Monitoring root rot in flat-leaf parsley via machine vision by unsupervised multivariate analysis of morphometric and spectral parameters

Abstract

Abstract Use of vertical farms is increasing rapidly as it enables year-round crop production, made possible by fully controlled growing environments situated within supply chains. However, intensive planting and high relative humidity make such systems ideal for the proliferation of fungal pathogens. Thus, despite the use of bio-fungicides and enhanced biosecurity measures, contamination of crops does happen, leading to extensive crop loss, necessitating the use of high-throughput monitoring for early detection of infected plants. In the present study, progression of foliar symptoms caused by Pythium irregulare -induced root rot was monitored for flat-leaf parsley grown in an experimental hydroponic vertical farming setup. Structural and spectral changes in plant canopy were recorded non-invasively at regular intervals using a 3D multispectral scanner. Five morphometric and nine spectral features were selected, and different combinations of these features were subjected to multivariate data analysis via principal component analysis to identify temporal trends for early disease detection. Combining morphometric and spectral features enabled a clear segregation of healthy and diseased plants at 4–7 days post inoculation (DPI), whereas use of only morphometric or spectral features allowed this at 7–9 DPI. Minimal datasets combining the six most effective features also resulted in effective grouping of healthy and diseased plants at 4–7 DPI. This suggests that selectively combining morphometric and spectral features can enable accurate early identification of infected plants, thus creating the scope for improving high-throughput crop monitoring in vertical farms.

Plant phenotyping relevance

3Dマルチスペクトルスキャナーで植物キャノピーの形態・スペクトル特徴を取得し、根腐病の症状を早期検出する手法が研究の中心であるため。

Code and data availability

The paper's parsley root-rot phenotyping datasets (morphometric/spectral scans, PCA analysis) are not publicly deposited; the authors state they are available from the corresponding author upon reasonable request. No author code or data URL is provided. The only URL in the text (Phenospex PlantEye documentation) is a-v

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