Stem-Leaf Segmentation and Morphological Traits Extraction in Rapeseed Seedlings Using a Three-Dimensional Point Cloud

Abstract

Developing accurate, non-destructive, and automated methods for monitoring the phenotypic traits of rapeseed is crucial for improving yield and quality in modern agriculture. We used a line laser binocular stereo vision technology system to obtain the three-dimensional (3D) point cloud data of different rapeseed varieties (namely Qinyou 7, Zheyouza 108, and Huyou 039) at the seedling stage, and the phenotypic traits of rapeseed were extracted from those point clouds. After pre-processing the rapeseed point clouds with denoising and segmentation, the plant height, leaf length, leaf width, and leaf area of the rapeseed in the seedling stage were extracted by a series of algorithms and were evaluated for accuracy with the manually measured values. The following results were obtained: the R2 values for plant height data between the extracted values of the 3D point cloud and the manually measured values reached 0.934, and the RMSE was 0.351 cm. Similarly, the R2 values for leaf length of the three kinds of rapeseed were all greater than 0.95, and the RMSEs for Qinyou 7, Zheyouza 108, and Huyou 039 were 0.134 cm, 0.131 cm, and 0.139 cm, respectively. Regarding leaf width, R2 was greater than 0.92, and the RMSEs were 0.151 cm, 0.189 cm, and 0.150 cm, respectively. Further, the R2 values for leaf area were all greater than 0.98 with RMSEs of 0.296 cm2, 0.231 cm2 and 0.259 cm2, respectively. The results extracted from the 3D point cloud are reliable and have high accuracy. These results demonstrate the potential of 3D point cloud technology for automated, non-destructive phenotypic analysis in rapeseed breeding programs, which can accelerate the development of improved varieties.

Plant phenotyping relevance

3D点群と分割・抽出アルゴリズムを用いて rapeseed の形態形質を自動推定し、手測定値で精度検証しており、フェノタイピング手法が研究の中心である。

Code and data availability

The paper describes 3D point cloud phenotyping of rapeseed seedlings (plant height, leaf length/width/area) but provides no public dataset, point cloud, image, code, or model deposit. The Data Availability Statement only offers contact with the corresponding author, and no authors' public URL for any asset is given. No

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