CitrusGAN: sparse-view X-ray CT reconstruction for citrus based on generative adversarial networks.

Abstract

3D phenotyping of the external and internal structures is important to breed new fruit species. As manual phenotyping is error-prone and time-consuming, developing high-throughput solutions with enhanced precision and low costs is necessary. This study presents CitrusGAN, a generative adversarial network-based method to reconstruct 3D citrus CT models from sparse-view X-ray images. The input X-rays are arranged in orthogonal pairs to provide additional information, and customized loss functions enable more effective learning of the mapping from 2D X-ray features to 3D CT volumes. Experimental results show that 6 views can generate high-quality citrus CT volumes, with a structural similarity index of 92.1 ​% and a peak signal-to-noise ratio of 26.374 ​dB compared with the real CT models. Moreover, the morphology of the generated model can be conveniently measured in the 3D space, facilitating the extraction of phenotypic traits including fruit length, width, height, volume, surface area, peel thickness, number of segments, and edible rate with high precision. As X-rays can be obtained using low-cost X-ray machines with high efficiency, the proposed method can be potentially developed into high-throughput equipment for fruit production lines or portable devices to realize in-field phenotyping.

Plant phenotyping relevance

柑橘の疎視野X線から3D CTモデルを再構成し、形態形質を抽出する手法を開発・検証しており、植物フェノタイピング手法が研究の中心である。

Code and data availability

The paper's Data availability statement explicitly states that the code and datasets (the citrus X-ray/CT phenotyping dataset and CitrusGAN analysis code) are publicly available at the authors' GitHub repository.