Remote Phenotyping Strategies for Sunflower Flowering Assessments Using Deep Learning Approaches

Abstract

ABSTRACT The flowering date of sunflowers is a crucial trait that significantly influences crop management practices and product placement. Traditional ground methods for data collection are labor-intensive and subjective, requiring field scientists to manually estimate and record data in the field. This trait can be measured by counting the number of days from planting until 50% of plants in each research plot have reached flowering at R5 developmental growth stage. However, this method is time-consuming and may overlook valuable information related to flowering rates and duration. Flowering time of sunflower also can be approximated by counting the number of heads (flowers) across multiple dates. We propose a method for rapidly counting sunflower heads to model flower counts over time and estimate flowering time using RGB images acquired by Unmanned Aerial Vehicles (UAVs). The method developed employs a deep learning model trained to detect sunflower heads from UAV imagery and modeling these counts over time using a logistic function to estimate the 50% flowering date. The experimental results obtained from this method enabled estimation of the flowering date with a high correlation to ground measurements ( r > 0.91). Significantly, this approach not only reduces labor but also improves the precision of data collection. Moreover, an increase of 6% in heritability across trials, compared to traditional methods, suggests that our approach contributes to a deeper genetic understanding of flowering dynamics. This includes enhanced insights into the timing and rates of flowering, essential for optimizing breeding strategies and understanding genetic responses to environmental conditions. This innovative approach offers a promising avenue for enhancing the efficiency and accuracy of sunflower phenotyping.

Plant phenotyping relevance

UAV画像からヒマワリ頭花を深層学習で検出し、開花時期という植物形質を推定する手法が研究の中心であり、地上測定との相関による検証も行っている。

Code and data availability

The supplied blocks describe UAV imagery, dot-annotated patches, a U-net density model, and flowering datasets, but contain no public deposit, availability statement, or URL for any paper-specific dataset, image set, code, or trained model. The supplemental materials section is empty of links.

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