Heading percentage estimation in proso millet (Panicum miliaceum L.) using aerial imagery and deep learning

Abstract

Abstract Proso millet (Panicum miliaceum L.), one of the major cultivated millets, serves as a complement to major cereal crops due to its drought tolerance and low input demands. Timing of heading is one of the key agronomic traits associated with its adaptation to a target environment and a major focus in breeding. Conventionally, heading percentage of a plot (genotype) was rated visually by breeders in field. Despite many successful studies reported in automatic head detections in other small grain species, little progress had been made to estimate heading percentage especially when multiple tillers exist. This study aimed to develop a method for automatic proso millet panicle detection and, more importantly, heading percentage estimation using regular red‐green‐blue images collected by an unmanned aerial vehicle. Aerial images of two dates were collected at heading stage in 2020 in Scottsbluff, NE. Faster regions with convolutional neural network models were trained to detect and count proso millet panicles in each plot. Then, using a sigmoid model, the number of detected panicles was converted to heading percentage without having the information of stand count and the number of tillers. Overall, the system achieved the highest coefficient of determination of 0.728 for proso millet heading percentage estimation, and an accuracy of 92.4% in determining whether a plot reached a certain threshold of heading (50% in this study). The methods developed in this study on heading percentage estimation can directly aid in decision making in proso millet breeding and can be ultimately incorporated into an automated proso millet high‐throughput phenotyping pipeline.

Plant phenotyping relevance

UAV画像と深層学習により、プロソミレットの穂検出から出穂率を推定する手法を開発しており、植物形質取得が研究の中心です。

Code and data availability

The supplied blocks describe the paper's UAV imagery, 170 plot images, and Faster R-CNN panicle detection models, but contain no data or code availability statement, no public repository, and no author-hosted URL for the imagery, annotations, trained models, or analysis scripts. All URLs in the blocks are references,OR

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