Inferring plant acclimation and improving model generalizability with differentiable physics-informed machine learning of photosynthesis

Abstract

Net photosynthesis (AN) is a major component of the global carbon cycle, with significant feedback to decadal-scale climate change. Although plant acclimation to environmental changes can modify AN, traditional vegetation models in Earth System Models (ESMs) often rely on plant functional type (PFT)-specific parameter calibrations or simplified acclimation assumptions, both of which lacked generalizability across time, space and PFTs. In this study, we propose a differentiable photosynthesis model to learn the environmental dependencies of Vc,max25, as this genre of hybrid physics-informed machine learning can seamlessly train neural networks and process-based equations together. Compared to PFT-specific parameterization of Vc,max25, learning the environment dependencies of key photosynthetic parameters improves model spatiotemporal generalizability. Applying environmental acclimation to Vc,max25 led to substantial variation in global mean AN, calling for the attention to acclimation in ESMs. The model effectively captured multivariate observations (Vcmax25, stomatal conductance gs, and AN) simultaneously and, in fact, multivariate constraints further improved model generalization across space and PFTs. It also learned sensible acclimation relationships of Vc,max25 to different environmental conditions. The model explained more than 54%, 57% and 62% of the variance of AN, gs, and Vcmax25, respectively, presenting a first global-scale spatial test benchmark of AN and gs. These results highlight the potential of differentiable modeling to enhanced process-based modules in ESMs and effectively leverage information from large, multivariate datasets.

Plant phenotyping relevance

植物の光合成・気孔コンダクタンス等の生理形質を推定する微分可能な物理情報機械学習モデルを開発し、観測データで検証・ベンチマークしており、フェノタイピング手法が中心である。

Code and data availability

The Open Research section states the differentiable photosynthesis model code is publicly available on Zenodo, and the leaf gas exchange databases (Knauer et al. 2018; Lin et al. 2015) and NGEE-Tropics leaf gas exchange datasets (Jardine et al. 2020; Rogers et al. 2022) used for the photosynthesis phenotyping analysis,