A highly accurate, low‐cost method for detecting and quantifying soybean leaf flipping phenotype during drought stress

Abstract

Abstract A genome‐wide association study (GWAS) using digital images was conducted to delineate regions of the genome that govern the leaf flipping quantitative trait in soybean ( Glycine max (L.) Merr). However, converting the digital data to numerical scores for downstream analyses was challenging. We have developed an algorithm that operates in the hue, saturation, and value color space in a structured image processing pipeline that includes preprocessing, binary masking for leaf region isolation, contrast enhancement, grid‐based intensity analysis, and thresholding for detecting folded leaves, a response of soybean to drought. The outputs of this image analysis reached over 90% detection accuracy for images captured under different imaging conditions. GWAS using the processed images identified the same genetic loci underlying drought tolerance as were identified earlier by GWAS of the manually curated dataset from the same photos. This approach provides a robust, scalable, and cost‐effective tool for digital image‐based high‐throughput phenotyping.

Plant phenotyping relevance

大豆葉の反転表現型を画像から定量化する画像処理アルゴリズムを開発し、異なる撮像条件で精度検証しているため、植物フェノタイピング手法が中心である。

Code and data availability

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