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A review of hyperspectral image analysis techniques for plant disease detection and identif ication

Vavilov Journal of Genetics and Breeding · 5 Apr 2022 · 10.18699/vjgb-22-25

Abstract

Plant diseases cause signif icant economic losses in agriculture around the world. Early detection, quantif ication and identif ication of plant diseases are crucial for targeted application of plant protection measures in crop production. Recently, intensive research has been conducted to develop innovative methods for diagnosing plant diseases based on hyperspectral technologies. The analysis of the ref lection spectrum of plant tissue makes it possible to classify healthy and diseased plants, assess the severity of the disease, differentiate the types of pathogens, and identify the symptoms of biotic stresses at early stages, including during the incubation period, when the symptoms are not visible to the human eye. This review describes the basic principles of hyperspectral measurements and different types of available hyperspectral sensors. Possible applications of hyperspectral sensors and platforms on different scales for diseases diagnosis are discussed and evaluated. Hyperspectral analysis is a new subject that combines optical spectroscopy and image analysis methods, which make it possible to simultaneously evaluate both physiological and morphological parameters. The review describes the main steps of the hyperspectral data analysis process: image acquisition and preprocessing; data extraction and processing; modeling and analysis of data. The algorithms and methods applied at each step are mainly summarized. Further, the main areas of application of hyperspectral sensors in the diagnosis of plant diseases are considered, such as detection, differentiation and identif ication of diseases, estimation of disease severity, phenotyping of disease resistance of genotypes. A comprehensive review of scientif ic publications on the diagnosis of plant diseases highlights the benef its of hyperspectral technologies in investigating interactions between plants and pathogens at various measurement scales. Despite the encouraging progress made over the past few decades in monitoring plant diseases based on hyperspectral technologies, some technical problems that make these methods diff icult to apply in practice remain unresolved. The review is concluded with an overview of problems and prospects of using new technologies in agricultural production.

Plant phenotyping relevance

植物病害の検出・重症度推定・抵抗性表現型評価に用いるハイパースペクトル計測と解析手法を中心に扱うレビューであり、植物フェノタイピング手法の方法論的レビューに該当する。

abstractThis review describes the basic principles of hyperspectral measurements and different types of available hyperspectral sensors.
abstractThe review describes the main steps of the hyperspectral data analysis process: image acquisition and preprocessing; data extraction and processing; modeling and analysis of data.

Code and data availability

This is a review article on hyperspectral image analysis for plant disease detection. It contains no paper-specific phenotype datasets, plant images, sensor data, analysis code, or trained models with public availability statements. All cited studies are prior work, and no author code or data URLs are provided.

No evidence-backed public reproduction asset is currently recorded.

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