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An automated confocal micro-extensometer enables in vivo quantification of mechanical properties with cellular resolution

bioRxiv · 1 Sept 2017 · 10.1101/183533

Abstract

How complex developmental-genetic networks are translated into organs with specific 3D shapes remains an open question. This question is particularly challenging because the elaboration of specific shapes is in essence a question of mechanics. In plants, this means how the genetic circuitry affects the cell wall. The mechanical properties of the wall and their spatial variation are the key factors controlling morphogenesis in plants. However, these properties are difficult to measure and investigating their relation to genetic regulation is particularly challenging. To measure spatial variation of mechanical properties, one must determine the deformation of a tissue in response to a known force with cellular resolution. Here we present an automated confocal micro-extensometer (ACME), which greatly expands the scope of existing methods for measuring mechanical properties. Unlike classical extensometers, ACME is mounted on a confocal microscope and utilizes confocal images to compute the deformation of the tissue directly from biological markers, thus providing cellular scale information and improved accuracy. ACME is suitable for measuring the mechanical responses in live tissue. As a proof of concept we demonstrate that the plant hormone gibberellic acid induces a spatial gradient in mechanical properties along the length of the Arabidopsis hypocotyl.\n\nTerms

Plant phenotyping relevance

植物組織の力学的性質を細胞解像度で定量する自動共焦点マイクロ伸展計を開発し、画像から変形を抽出する方法を中心に実証しているため。

abstractHere we present an automated confocal micro-extensometer (ACME), which greatly expands the scope of existing methods for measuring mechanical properties.
abstractACME is mounted on a confocal microscope and utilizes confocal images to compute the deformation of the tissue directly from biological markers

Code and data availability

保存済みの本文根拠を更新済みルールで再検証し、公開資産1件を確認しました。

Codepublic

The positioners are controlled by a SmarAct MCS3D (SmarAct GmbH) controller (Figure 1C, label 15) accompanied by its software library, which in turn is controlled by custom-made software (available here: https://github.com/ACME-Robinson/InstallPackage)

Open resource ↗ACME-Robinson/InstallPackage · pdf-page:14 lines:1-54

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