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The FIP 1.0 Data Set: Highly resolved annotated image time series of 4,000 wheat plots grown in 6 years.

GigaScience · 1 Jan 2025 · 10.1093/gigascience/giaf051

Abstract

BACKGROUND: Understanding genotype-environment interactions of plants is crucial for crop improvement, yet limited by the scarcity of quality phenotyping data. This Data Note presents the Field Phenotyping Platform 1.0 data set, a comprehensive resource for winter wheat research that combines imaging, trait, environmental, and genetic data. FINDINGS: We provide time-series data for more than 4,000 wheat plots, including aligned high-resolution image sequences totaling more than 153,000 aligned images across 6 years. Measurement data for 8 key wheat traits are included-namely, canopy cover values, plant heights, wheat head counts, senescence ratings, heading date, final plant height, grain yield, and protein content. Genetic marker information and environmental data complement the time series. Data quality is demonstrated through heritability analyses and genomic prediction models, achieving accuracies aligned with previous research. CONCLUSIONS: This extensive data set offers opportunities for advancing crop modeling and phenotyping techniques, enabling researchers to develop novel approaches for understanding genotype-environment interactions, analyzing growth dynamics, and predicting crop performance. By making this resource publicly available, we aim to accelerate research in climate-adaptive agriculture and foster collaboration between plant science and machine learning communities.

Plant phenotyping relevance

4,000以上の小麦プロットについて高解像度画像時系列と複数の植物形質を統合した公開データセットが主題であり、植物表現型研究向けのデータ資源として中心的です。

abstractThis Data Note presents the Field Phenotyping Platform 1.0 data set, a comprehensive resource for winter wheat research that combines imaging, trait, environmental, and genetic data.
abstractWe provide time-series data for more than 4,000 wheat plots, including aligned high-resolution image sequences totaling more than 153,000 aligned images across 6 years.
abstractThis extensive data set offers opportunities for advancing crop modeling and phenotyping techniques

Code and data availability

植物フェノタイピング解析を再現する公開資産であることを、入力本文と直接リンクから確認できなかったため保留しました。

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