Hyperspectral Imaging and Machine Learning for Diagnosing Rice Bacterial Blight Symptoms Caused by Xanthomonas oryzae pv. oryzae , Pantoea ananatis and Enterobacter asburiae .

Abstract

In rice, infections caused by Pantoea ananatis or Enterobacter asburiae closely resemble the bacterial blight induced by Xanthomonas oryzae pv. oryzae , yet they differ in drug resistance and management strategies. This study explores the potential of combining hyperspectral imaging (HSI) with machine learning for the rapid and accurate detection of rice bacterial blight symptoms caused by various pathogens. One-dimensional convolutional neural networks (1DCNNs) were employed to construct a classification model, integrating various spectral preprocessing techniques and feature selection algorithms for comparison. To enhance model robustness and mitigate overfitting due to limited spectral samples, generative adversarial networks (GANs) were utilized to augment the dataset. The results indicated that the 1DCNN model, after feature selection using uninformative variable elimination (UVE), achieved an accuracy of 86.11% and an F1 score of 0.8625 on the five-class dataset. However, the dominance of Pantoea ananatis in mixed bacterial samples negatively impacted classification performance. After removing mixed-infection samples, the model attained an accuracy of 97.06% and an F1 score of 0.9703 on the four-class dataset, demonstrating high classification accuracy across different pathogen-induced infections. Key spectral bands were identified at 420-490 nm, 610-670 nm, 780-850 nm, and 910-940 nm, facilitating pathogen differentiation. This study presents a precise, non-destructive approach to plant disease detection, offering valuable insights into disease prevention and management in precision agriculture.

Plant phenotyping relevance

イネの病徴をハイパースペクトル画像と機械学習で直接検出・分類する手法が研究の中心であり、植物病害状態の非破壊的フェノタイピングに該当する。

Code and data availability

The paper's hyperspectral dataset of rice bacterial blight lesions and the 1DCNN/GAN analysis code are not publicly deposited; the Data Availability Statement restricts access to on-request from the corresponding author. The only public supplement (Tables S1, Figures S1–S4) contains result figures (confusion matrices,预

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