Evaluation of Rapeseed Leave Segmentation Accuracy Using Binocular Stereo Vision 3D Point Clouds

Abstract

Point cloud segmentation is necessary for obtaining highly precise morphological traits in plant phenotyping. Although a huge development has occurred in point cloud segmentation, the segmentation of point clouds from complex plant leaves still remains challenging. Rapeseed leaves are critical in cultivation and breeding, yet traditional two-dimensional imaging is susceptible to reduced segmentation accuracy due to occlusions between plants. The current study proposes the use of binocular stereo-vision technology to obtain three-dimensional (3D) point clouds of rapeseed leaves at the seedling and bolting stages. The point clouds were colorized based on elevation values in order to better process the 3D point cloud data and extract rapeseed phenotypic parameters. Denoising methods were selected based on the source and classification of point cloud noise. However, for ground point clouds, we combined plane fitting with pass-through filtering for denoising, while statistical filtering was used for denoising outliers generated during scanning. We found that, during the seedling stage of rapeseed, a region-growing segmentation method was helpful in finding suitable parameter thresholds for leaf segmentation, and the Locally Convex Connected Patches (LCCP) clustering method was used for leaf segmentation at the bolting stage. Furthermore, the study results show that combining plane fitting with pass-through filtering effectively removes the ground point cloud noise, while statistical filtering successfully denoises outlier noise points generated during scanning. Finally, using the region-growing algorithm during the seedling stage with a normal angle threshold set at 5.0/180.0* M_PI and a curvature threshold set at 1.5 helps to avoid the under-segmentation and over-segmentation issues, achieving complete segmentation of rapeseed seedling leaves, while the LCCP clustering method fully segments rapeseed leaves at the bolting stage. The proposed method provides insights to improve the accuracy of subsequent point cloud phenotypic parameter extraction, such as rapeseed leaf area, and is beneficial for the 3D reconstruction of rapeseed.

Plant phenotyping relevance

二眼ステレオビジョンによる3D点群取得、ノイズ除去、葉セグメンテーションを開発・評価し、葉面積などの表現型形質抽出を目的とするため、植物フェノタイピング手法が研究の中心である。

Code and data availability

The supplied blocks describe rapeseed point cloud acquisition and segmentation methods but contain no public dataset deposit, author code repository, trained model, or supplement with data/code. The only URL mentioned (pointclouds.org/downloads) is the generic PCL library, not a paper-specific asset.

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