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Integrating deep learning for visual question answering in Agricultural Disease Diagnostics: Case Study of Wheat Rust.

Scientific reports · 15 Nov 2024 · 10.1038/s41598-024-79793-2

Abstract

This paper presents a novel approach to agricultural disease diagnostics through the integration of Deep Learning (DL) techniques with Visual Question Answering (VQA) systems, specifically targeting the detection of wheat rust. Wheat rust is a pervasive and destructive disease that significantly impacts wheat production worldwide. Traditional diagnostic methods often require expert knowledge and time-consuming processes, making rapid and accurate detection challenging. We drafted a new, WheatRustDL2024 dataset (7998 images of healthy and infected leaves) specifically designed for VQA in the context of wheat rust detection and utilized it to retrieve the initial weights on the federated learning server. This dataset comprises high-resolution images of wheat plants, annotated with detailed questions and answers pertaining to the presence, type, and severity of rust infections. Our dataset also contains images collected from various sources and successfully highlights a wide range of conditions (different lighting, obstructions in the image, etc.) in which a wheat image may be taken, therefore making a generalized universally applicable model. The trained model was federated using Flower. Following extensive analysis, the chosen central model was ResNet. Our fine-tuned ResNet achieved an accuracy of 97.69% on the existing data. We also implemented the BLIP (Bootstrapping Language-Image Pre-training) methods that enable the model to understand complex visual and textual inputs, thereby improving the accuracy and relevance of the generated answers. The dual attention mechanism, combined with BLIP techniques, allows the model to simultaneously focus on relevant image regions and pertinent parts of the questions. We also created a custom dataset (WheatRustVQA) with our augmented dataset containing 1800 augmented images and their associated question-answer pairs. The model fetches an answer with an average BLEU score of 0.6235 on our testing partition of the dataset. This federated model is lightweight and can be seamlessly integrated into mobile phones, drones, etc. without any hardware requirement. Our results indicate that integrating deep learning with VQA for agricultural disease diagnostics not only accelerates the detection process but also reduces dependency on human experts, making it a valuable tool for farmers and agricultural professionals. This approach holds promise for broader applications in plant pathology and precision agriculture and can consequently address food security issues.

Plant phenotyping relevance

小麦葉の画像からさび病の有無・種類・重症度を推定するVQA、データセット、連合学習モデルを開発・評価しており、植物病害状態の取得が中心的な方法貢献である。

abstractThis dataset comprises high-resolution images of wheat plants, annotated with detailed questions and answers pertaining to the presence, type, and severity of rust infections.
abstractWe drafted a new, WheatRustDL2024 dataset (7998 images of healthy and infected leaves) specifically designed for VQA in the context of wheat rust detection
abstractOur fine-tuned ResNet achieved an accuracy of 97.69% on the existing data.

Code and data availability

The paper's data availability statement explicitly releases the authors' FL/VQA code on GitHub and the paper-specific wheat rust image datasets (WheatRustDL2024, WheatRustVQA images and question-answer text) via public SharePoint/Google Drive/Docs links.

Datasetpublic

• This study introduces a Federated Learning and a Visual Question-Answering model. These models are available online on this study’s GitHub (https://github.com/aknnvt/FL-VQA-in-Wheat-Rust). • The custom datasets curated for this study, WheatRustDL2024 (https://bitspilaniac-my.sharepoint.com/:f:/g/personal/f20212378_pilani_bits-pilani_ac_in/EvwjsY_JT4FIu7ZTU8zyXOMB8Ywk4OXgO6LYwTk8dOiN_Q? e=45eTOD) and WheatRustVQA (https://docs.google.com/document/d/1EvVdrMi7W-JZkeeePEkNmVIEJ1dn7eln/edit? usp=sharing&ouid=114090611032812705334&rtpof=true&sd=true), are available for public use. Additionally, the images in WheatRustVQA (https://drive.google.com/drive/folders/1izs5ZVmi9V__ixk4ODiJAyachAulP3RL?

Open resource ↗WheatRustDL2024 · lines:292-351
Datasetpublic

models are available online on this study’s GitHub (https://github.com/aknnvt/FL-VQA-in-Wheat-Rust). • The custom datasets curated for this study, WheatRustDL2024 (https://bitspilaniac-my.sharepoint.com/:f:/g/personal/f20212378_pilani_bits-pilani_ac_in/EvwjsY_JT4FIu7ZTU8zyXOMB8Ywk4OXgO6LYwTk8dOiN_Q? e=45eTOD) and WheatRustVQA (https://docs.google.com/document/d/1EvVdrMi7W-JZkeeePEkNmVIEJ1dn7eln/edit? usp=sharing&ouid=114090611032812705334&rtpof=true&sd=true), are available for public use. Additionally, the images in WheatRustVQA (https://drive.google.com/drive/folders/1izs5ZVmi9V__ixk4ODiJAyachAulP3RL? usp=drive_link). The raw version of the answers can be found on the GitHub repository. Dec

Open resource ↗WheatRustVQA · lines:292-351
Datasetpublic

/g/personal/f20212378_pilani_bits-pilani_ac_in/EvwjsY_JT4FIu7ZTU8zyXOMB8Ywk4OXgO6LYwTk8dOiN_Q? e=45eTOD) and WheatRustVQA (https://docs.google.com/document/d/1EvVdrMi7W-JZkeeePEkNmVIEJ1dn7eln/edit? usp=sharing&ouid=114090611032812705334&rtpof=true&sd=true), are available for public use. Additionally, the images in WheatRustVQA (https://drive.google.com/drive/folders/1izs5ZVmi9V__ixk4ODiJAyachAulP3RL? usp=drive_link). The raw version of the answers can be found on the GitHub repository. Declarations Competing interests The authors declare no competing interests. References 1. Abebe W Wheat Leaf Rust Disease Management: a review J. Plant. Pathol. Microbiol. 2021 12 1 8 Abebe, W. Wheat Leaf Rus

Open resource ↗WheatRustVQA · lines:292-351

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