Raw data and analysis scripts are available via GitHub at https://github.com/ryanafolk/isotope . A stable release of this repository is available at: https://doi.org/10.5281/zenodo.8407949
Open resource ↗ryanafolk/isotope · lines:143-208Unverified paper record
Elemental and isotopic analysis of leaves predicts nitrogen-fixing phenotypes.
Scientific reports · 29 Aug 2024 · 10.1038/s41598-024-70412-8
Abstract
Nitrogen (N)-fixing symbiosis is critical to terrestrial ecosystems, yet possession of this trait is known for few plant species. Broader presence of the symbiosis is often indirectly determined by phylogenetic relatedness to taxa investigated via manipulative experiments. This data gap may ultimately underestimate phylogenetic, spatial, and temporal variation in N-fixing symbiosis. Still needed are simpler field or collections-based approaches for inferring symbiotic status. N-fixing plants differ from non-N-fixing plants in elemental and isotopic composition, but previous investigations have not tested predictive accuracy using such proxies. Here we develop a regional field study and demonstrate a simple classification model for fixer status using nitrogen and carbon content measurements, and stable isotope ratios (δ 15 N and δ 13 C), from field-collected leaves. We used mixed models and classification approaches to demonstrate that N-fixing phenotypes can be used to predict symbiotic status; the best model required all predictors and was 80-94% accurate. Predictions were robust to environmental context variation, but we identified significant variation due to native vs. non-native (exotic) status and phylogenetic affinity. Surprisingly, N content-not δ 15 N-was the strongest predictor, suggesting that future efforts combine elemental and isotopic information. These results are valuable for understudied taxa and ecosystems, potentially allowing higher-throughput field-based N-fixer assessments.
Plant phenotyping relevance
葉の元素・安定同位体測定と分類モデルを組み合わせ、N固定という植物状態を推定する方法を開発・精度検証しており、単なる生物学的測定ではない。
abstractHere we develop a regional field study and demonstrate a simple classification model for fixer status using nitrogen and carbon content measurements, and stable isotope ratios (δ 15 N and δ 13 C), from field-collected leaves.
abstractthe best model required all predictors and was 80-94% accurate.
abstractThese results are valuable for understudied taxa and ecosystems, potentially allowing higher-throughput field-based N-fixer assessments.
Code and data availability
The paper's Data availability statement explicitly deposits raw isotope/elemental phenotype data and analysis scripts in a public GitHub repository with a Zenodo stable release, including the isotope CSV dataset and phylogenetic tree used in the analyses.
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