An image dataset of diverse safflower ( Carthamus tinctorius L.) genotypes for salt response phenotyping.

Abstract

This article describes a dataset of high-resolution visible-spectrum images of safflower ( Carthamus tinctorius L.) plants obtained from a LemnaTec Scanalyser automated phenomics platform along with the associated image analysis output and manually acquired biomass data. This series contains 1832 images of 200 diverse safflower genotypes, acquired at the Plant Phenomics Victoria, Horsham, Victoria, Australia. Two Prosilica GT RGB (red-green-blue) cameras were used to generate 6576 × 4384 pixel portable network graphic (PNG) images. Safflower genotypes were either subjected to a salt treatment (250 mM NaCl) or grown as a control (0 mM NaCl) and imaged daily from 15 to 36 days after sowing. Each snapshot consists of four images collected at a point in time; one of which is taken from above (top-view) and the remainder from the side at either 0°, 120° or 240°. The dataset also includes analysis output quantifying traits and describing phenotypes, as well as manually collected biomass and leaf ion content data. The usage of the dataset is already demonstrated in Thoday-Kennedy et al. (2021) [1]. This dataset describes the early growth differences of diverse safflower genotypes and identified genotypes tolerant or susceptible to salinity stress. This dataset provides detailed image analysis parameters for phenotyping a large population of safflower that can be used for the training of image-based trait identification pipelines for a wide range of crop species.

Plant phenotyping relevance

高スループット画像データセットと画像解析出力、形質定量パラメータを提供しており、植物フェノタイピング手法・再利用可能なデータ資源が中心である。

Code and data availability

The paper is itself a data descriptor for a public safflower salt-response phenotyping dataset (1832 RGB images, image analysis output, and manual biomass/ion data) deposited on Harvard Dataverse, with an explicit direct URL.