Plant cell wall imaging by metabolic click‐mediated labelling of rhamnogalacturonan II using azido 3‐deoxy‐ d ‐ manno ‐oct‐2‐ulosonic acid

Abstract

Summary In plants, 3‐deoxy‐ d ‐ manno ‐oct‐2‐ulosonic acid (Kdo) is a monosaccharide that is only found in the cell wall pectin, rhamnogalacturonan‐ II ( RG ‐ II ). Incubation of 4‐day‐old light‐grown Arabidopsis seedlings or tobacco BY ‐2 cells with 8‐azido 8‐deoxy Kdo (Kdo‐N 3 ) followed by coupling to an alkyne‐containing fluorescent probe resulted in the specific in muro labelling of RG ‐ II through a copper‐catalysed azide–alkyne cycloaddition reaction. CMP ‐Kdo synthetase inhibition and competition assays showing that Kdo and D‐Ara, a precursor of Kdo, but not L‐Ara, inhibit incorporation of Kdo‐N 3 demonstrated that incorporation of Kdo‐N 3 occurs in RG ‐ II through the endogenous biosynthetic machinery of the cell. Co‐localisation of Kdo‐N 3 labelling with the cellulose‐binding dye calcofluor white demonstrated that RG ‐ II exists throughout the primary cell wall. Additionally, after incubating plants with Kdo‐N 3 and an alkynated derivative of L‐fucose that incorporates into rhamnogalacturonan I, co‐localised fluorescence was observed in the cell wall in the elongation zone of the root. Finally, pulse labelling experiments demonstrated that metabolic click‐mediated labelling with Kdo‐N 3 provides an efficient method to study the synthesis and redistribution of RG ‐ II during root growth.

Plant phenotyping relevance

植物細胞壁中のRG-IIの局在・合成・再分布を蛍光クリック標識で可視化する手法を開発し、根の成長に伴う状態の解析へ適用しており、測定法が研究の中心である。

Code and data availability

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