All K and FIPAR models presented here were coded in Matlab and we also developed an independent executable component in the BioMA software framework ( http://www.biomamodelling.org ), which can easily be extended and coupled with CGMs. The source code and the standalone executable of the BioMA component are freely available at https://zenodo.org/record/3820386 .
Open resource ↗Zenodo · 3820386 · lines:906-951Unverified paper record
Importance of the description of light interception in crop growth models.
Plant physiology · 1 Jun 2021 · 10.1093/plphys/kiab113
Abstract
Canopy light interception determines the amount of energy captured by a crop, and is thus critical to modeling crop growth and yield, and may substantially contribute to the prediction uncertainty of crop growth models (CGMs). We thus analyzed the canopy light interception models of the 26 wheat (Triticum aestivum) CGMs used by the Agricultural Model Intercomparison and Improvement Project (AgMIP). Twenty-one CGMs assume that the light extinction coefficient (K) is constant, varying from 0.37 to 0.80 depending on the model. The other models take into account the illumination conditions and assume either that all green surfaces in the canopy have the same inclination angle (θ) or that θ distribution follows a spherical distribution. These assumptions have not yet been evaluated due to a lack of experimental data. Therefore, we conducted a field experiment with five cultivars with contrasting leaf stature sown at normal and double row spacing, and analyzed θ distribution in the canopies from three-dimensional canopy reconstructions. In all the canopies, θ distribution was well represented by an ellipsoidal distribution. We thus carried out an intercomparison between the light interception models of the AgMIP-Wheat CGMs ensemble and a physically based K model with ellipsoidal leaf angle distribution and canopy clumping (KellC). Results showed that the KellC model outperformed current approaches under most illumination conditions and that the uncertainty in simulated wheat growth and final grain yield due to light models could be as high as 45%. Therefore, our results call for an overhaul of light interception models in CGMs.
Plant phenotyping relevance
三次元キャノピー再構築から葉角度分布を抽出し、光遮断モデルを比較・検証することが研究の中心であり、植物体の構造形質を定量化している。
abstractanalyzed θ distribution in the canopies from three-dimensional canopy reconstructions
abstractWe thus carried out an intercomparison between the light interception models of the AgMIP-Wheat CGMs ensemble and a physically based K model with ellipsoidal leaf angle distribution and canopy clumping (KellC).
Code and data availability
The paper's K and FIPAR light interception models were coded in Matlab and implemented as a BioMA component; the authors state the source code and standalone executable are freely available on Zenodo (record 3820386). The SiriusQuality GitHub link is a general model repository, not paper-specific analysis code.
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