Performance of Machine Learning Models in Predicting Common Bean (Phaseolus vulgaris L.) Crop Nitrogen Using NIR Spectroscopy

Abstract

Beans are the main direct source of protein consumed by humans in the world and their productivity is directly linked to nitrogen. The short crop cycle imposes the need for fast methodologies for N quantification. In this work, we evaluated the performance of four machine learning algorithms in nitrogen estimation using NIR spectroscopy, comparing predictions between complete spectral data and only intervals obtained with the variable importance in projection (VIP). Doses of 0, 50, 100, and 150 kg ha−1 of N were applied and leaf reflectance was collected. Weka software was used to test the algorithms. The selection of the most effective spectral zones was made with the variable importance in projection (VIP). The intervals of 700–740 nm and 983–995 nm were considered the most important for the study of nitrogen. More efficient predictions were verified for RF and KNN models (R2 = 0.89, RMSE = 2.23 g kg−1; and R2 = 0.80, RMSE = 2.89 g kg−1, respectively) when only the most important spectral regions were included. The efficiency of nitrogen prediction based on NIR reflectance combined with machine learning was verified, which can serve as an important tool in precision agriculture.

Plant phenotyping relevance

葉のN濃度という植物形質をNIR分光と機械学習で推定し、複数モデルと波長域を比較評価しており、表現型取得・推定手法が研究の中心である。

Code and data availability

The paper's NIR reflectance spectra, leaf nitrogen measurements, and analysis are not publicly deposited; the Data Availability Statement says raw data are available only upon request. No public code or dataset URL is provided.

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