Parameterization of steady-state models for C3 photosynthesis using photosynthesis response curves: Which models to use and which parameter estimates to trust?

Abstract

Photosynthesis sustains life on Earth, yet we still lack comprehensive understanding of the biochemical and environmental factors that affect this fundamental process. Steady-state models of C 3 photosynthesis provide a powerful framework but rely on reliable estimation of numerous parameters from gas-exchange data. Despite methodological advances, how model structure and data choice influence parameter accuracy and consistency remains poorly explored. Here, we systematically evaluate parameterization across nine steady-state photosynthesis models and different levels of gas-exchange measurements. Using synthetic photosynthesis response curves generated from the examined models with sampled parameter values, we applied Bayesian inference to quantify parameter uncertainty and estimation performance for the considered models. We showed that while key parameters of C 3 photosynthesis, such as maximum rate of RuBP-saturated carboxylation and of electron transport through photosystem II, can be reliably estimated from a single A-Ci curve, other parameters, such as leaf mitochondrial respiration and CO 2 compensation point, require expanded sampling of light response space. We also demonstrated the advantage of using simultaneous estimation of all model parameters over biasing the estimation by keeping some parameters fixed to prior values. Usage of barley gas-exchange data further demonstrated that parameter consistency across models can be evaluated comparing different levels of measurements and depends strongly on both model formulation and data type. Together, our study provides practical guidance for selecting photosynthesis models, designing phenotyping strategies and choosing parameterization approaches for steady-state C 3 photosynthesis.

Plant phenotyping relevance

ガス交換データから光合成パラメータを推定するモデルと測定設計を体系的に評価しており、植物生理形質の取得・推定手法が研究の中心である。

Code and data availability

The supplied blocks describe synthetic A-Ci/A-Q response curves and barley gas-exchange data (cited from Breil-Aubert et al., 2025, a prior study) analyzed via Bayesian inference, but contain no public data deposit, author code repository, model checkpoint, or supplement URL. No paper-specific, publicly actionable phen

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