Quantifying Canopy Closure Dynamics Using UAV Imagery and Semantic Segmentation in Rice Breeding Trials.

Abstract

The canopy closure stage is a critical phase of rice ( Oryza sativa L.) development that influences canopy structure and final grain yield. Accurate and continuous monitoring of canopy closure dynamics is therefore essential for variety screening and cultivation optimization. This study combines unmanned aerial vehicle (UAV) remote sensing technology with deep learning-based semantic segmentation to establish an efficient framework for quantifying rice canopy closure dynamics. UAV RGB images were acquired for 198 hybrid rice varieties during early growth stages and used to build a canopy segmentation dataset. Three semantic segmentation models, i.e., DeepLabv3+, U-Net, and PSPNet, were systematically evaluated. Results show that DeepLabv3+ performed the best and enabled precise extraction of rice canopy features, obtaining a mean intersection over union (mIoU) of 0.86. Based on the extracted canopy coverage, the Gompertz model was utilized to characterize temporal canopy closure trajectories for all varieties, achieving an average R 2 of 0.978. Subsequently, five key dynamic indicators were derived, including canopy closure limit value ( K ), initial growth coefficient ( a ), growth rate coefficient ( b ), maximum instantaneous growth rate ( MGR ), and days to maximum growth rate ( Tm ). K-means clustering analysis was performed on these indicators to categorize all rice varieties into three clusters, disclosing pronounced differences in early-stage canopy development characteristics. Correlation analysis further demonstrated that canopy closure dynamics were closely associated with grain yield. Overall, while acknowledging the limitations of a single-season and single-site dataset, this study provides a scalable and objective framework for quantifying rice canopy closure dynamics, offering valuable support for variety selection, cultivation optimization, and high-yield rice production.

Plant phenotyping relevance

UAV画像と深層学習セマンティックセグメンテーションを用いてイネのキャノピー閉鎖動態を定量化する手法を構築・評価しており、植物形質抽出が研究の中心である。

Code and data availability

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