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Iterative Motion Compensation for Canonical 3D Reconstruction From UAV Plant Images Captured in Windy Conditions

IEEE Robotics and Automation Letters · 1 May 2026 · 10.1109/lra.2026.3675934

Abstract

Three-dimensional (3D) phenotyping of plants plays a crucial role for understanding plant growth, yield prediction, and disease control. We present a pipeline capable of generating high-quality 3D reconstructions of individual agricultural plants. To acquire data, a small commercially available Unmanned aerial vehicle (UAV) captures images of a selected plant. Apart from placing ArUco markers, the entire image acquisition process is fully autonomous, controlled by a self-developed Android application running on the drone's controller. The reconstruction task is particularly challenging due to environmental wind and downwash of the UAV. Our proposed pipeline supports the integration of arbitrary state-of-the-art 3D reconstruction methods. To mitigate errors caused by leaf motion during image capture, we use an iterative method that gradually adjusts the input images through deformation. Motion is estimated using optical flow between the original input images and intermediate 3D reconstructions rendered from the corresponding viewpoints. This alignment gradually reduces scene motion, resulting in a canonical representation. After a few iterations, our pipeline improves the reconstruction of state-of-the-art methods and enables the extraction of high-resolution 3D meshes.

Plant phenotyping relevance

UAV画像から植物個体の高解像度3D形状を再構成する手法を開発しており、植物フェノタイピングの取得・抽出方法が研究の中心である。

abstractWe present a pipeline capable of generating high-quality 3D reconstructions of individual agricultural plants.
abstractTo mitigate errors caused by leaf motion during image capture, we use an iterative method that gradually adjusts the input images through deformation.
abstractAfter a few iterations, our pipeline improves the reconstruction of state-of-the-art methods and enables the extraction of high-resolution 3D meshes.

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