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Prediction of vegetation indices from down-sampled hyperspectral data using machine learning: A novel framework for olive crop monitoring

PLOS One · 27 Mar 2026 · 10.1371/journal.pone.0323158

Abstract

Accurate plant health monitoring relies on hyperspectral imagery to extract vegetation spectral signatures and compute vegetation indices (VIs), which are critical for phenotyping and crop condition assessment. However, the requirement for high spectral resolution significantly increases the cost and complexity of data acquisition. In this study, we proposed a novel machine learning-based framework for predicting VIs from down-sampled hyperspectral reflectance data. The aim was to reduce the dependency on high-resolution spectral imagery without compromising prediction accuracy. The framework integrated correlation-based feature selection with four regression models to identify and utilize the most informative spectral bands from coarsely sampled data. The system was trained and validated using a data set consisting of 555 spectral signatures collected from olive leaves at five stages of dehydration, with spectral resolutions ranging from 1 to 100 nm. A total of 25 vegetation indices, commonly used in the estimation of water stress, chlorophyll, and nitrogen, were predicted on various sampling scales. Experimental results show that even with 100 nm spectral resolution, the proposed framework achieves high prediction accuracy, with coefficients of determination reaching 0.99 for RVSI, VOPT, and SPADI indices. These findings demonstrate that accurate vegetation index estimation is achievable with significantly fewer spectral bands, offering a cost-effective solution for large-scale plant health monitoring. This framework lays the groundwork for the development of low-cost, data-efficient remote sensing systems for precision agriculture, especially in crops such as olives, where health dynamics are sensitive to water and nutrient status.

Plant phenotyping relevance

オリーブ葉のハイパースペクトルデータから植物状態に関わる植生指数を推定する、低コストな機械学習・スペクトル測定フレームワークの開発と検証が中心である。

abstractwe proposed a novel machine learning-based framework for predicting VIs from down-sampled hyperspectral reflectance data
abstractThe framework integrated correlation-based feature selection with four regression models
abstractThe system was trained and validated using a data set consisting of 555 spectral signatures collected from olive leaves
abstractThese findings demonstrate that accurate vegetation index estimation is achievable with significantly fewer spectral bands

Code and data availability

The paper's Data Availability statement points to a Figshare deposit (DOI 10.6084/m9.figshare.26950660.v2), which per the statement hosts the study's data — the 555 olive-leaf hyperspectral signatures and vegetation index measurements underlying the phenotyping analysis. This is a paper-specific, publicly accessible,直接

Datasetpublic

nm. (PDF) S2 File Inclusivity in global research questionnaire. (PDF) Acknowledgments The authors thank the Advanced Center of Electric and Electronic Engineering - AC3E ANID. The authors acknowledge the support provided by Universidad Técnica Federico Santa María and the Direction of Post-Grade programs DDP. Data Availability https://doi.org/10.6084/m9.figshare.26950660.v2 . Funding Statement This work was funded by the ANID FB240002 basal center AC3E, and ANID national doctorate scholarship, folio N°21231129. The funders had no role in study design, data collection and analysis, decision to publish, or preparation of the manuscript. References 1. Ruiz-Carrasco B, Fernández-Lobato L, López-

Open resource ↗figshare · 10.6084/m9.figshare.26950660.v2 · lines:266-293

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