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Improving computer vision for plant pathology through advanced training techniques.

Applications in plant sciences · 1 May 2025 · 10.1002/aps3.70010

Abstract

Premise This study investigates advanced training techniques to improve the performance of convolutional neural networks for disease detection in cocoa, Theobroma cacao . Methods Despite recent stagnation in accuracy improvements in computer vision for image classification, our research demonstrates significant advancements in performance through semi-supervised learning, specialised loss functions, and the inclusion of a non-cocoa class. Results Semi-supervised learning reduced overfitting and enhanced generalisability, particularly for subtle symptoms. The non-cocoa class exposed models to a broad range of relevant features, significantly improving model robustness and performance in difficult cases. Grad-CAM for qualitative assessment provided valuable insights into model behaviour, highlighting cases of overfitting missed by summary statistics. We also describe dynamic focal loss, a novel loss function that uses an empirical measure of difficulty to weight each image. Our results suggest that while PhytNet shows promise in terms of computational efficiency and superior handling of difficult images, ResNet18 with semi-supervised learning and dynamic focal loss emerged as the strongest contender for real-world deployment. Discussion This research underscores the potential of semi-supervised learning and advanced loss functions in enhancing the applicability of deep learning models in agricultural disease management. It also presents a new high-quality benchmark dataset of 7220 images of diseased and healthy cocoa trees, offering a much greater and more realistic challenge than the Plan Village dataset.

Plant phenotyping relevance

カカオ葉・樹体の病徴画像から植物の病害状態を推定する深層学習手法を開発・比較し、性能評価とベンチマークデータセット構築を行っており、フェノタイピング手法が中心である。

abstractThis study investigates advanced training techniques to improve the performance of convolutional neural networks for disease detection in cocoa, Theobroma cacao .
abstractWe also describe dynamic focal loss, a novel loss function that uses an empirical measure of difficulty to weight each image.
abstractIt also presents a new high-quality benchmark dataset of 7220 images of diseased and healthy cocoa trees

Code and data availability

The paper's data availability statement explicitly provides the paper-specific cocoa image dataset and the FAIGB dataset on OSF, plus authors' analysis code on GitHub, all with public URLs.

Datasetpublic

The cocoa image data is available at https://osf.io/2fw6g

Open resource ↗osf · 2fw6g · lines:753-923
Datasetpublic

the FAIGB web‐scraped dataset of crop disease images is available at https://osf.io/nuafh

Open resource ↗osf · nuafh · lines:753-923
Codepublic

All code necessary to reproduce these results is available on GitHub ( https://github.com/jrsykes/CocoaReader/tree/main/CocoaNet/PhytNet_Cocoa )

Open resource ↗github · jrsykes/CocoaReader · lines:753-923

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