Plant diseases have continued to threaten agricultural productivity, while manual inspection methods have remained inefficient and prone to subjectivity. This study proposed and assessed a hybrid framework integrating a Convolutional Neural Network (CNN) with a Large Language Model (LLM) to perform image-based plant leaf disease classification accompanied by interpretable diagnostic explanations. EfficientNetV2-M was employed as the visual backbone and trained on 11 selected classes of apple, grape, and potato leaf images derived from the PlantVillage dataset. A structured data splitting strategy was applied to ensure reliable model validation and unbiased testing. The classification capability of the CNN component was examined through standard multi-class evaluation indicators, including class-wise predictive consistency and error distribution analysis. Experimental results indicated that the model delivered highly consistent predictions, reaching a peak test accuracy of 99.79%, reflecting its robustness in distinguishing visually similar disease patterns. To overcome the black-box limitation, prediction outputs were transformed into structured prompts and processed by GPT-4o to generate contextual explanations. The generated narratives systematically described observable symptoms, highlighted distinguishing characteristics, and suggested initial management actions. Overall, the proposed hybrid system demonstrated that combining high-performance visual recognition with language-based reasoning enhanced both diagnostic reliability and interpretability in digital agriculture applications.
Why it matches plant phenotyping methods植物葉の画像から病害状態を推定するCNN・LLM統合手法を開発・評価しており、病害分類と説明生成が研究の中心であるため。
abstractThis study proposed and assessed a hybrid framework integrating a Convolutional Neural Network (CNN) with a Large Language Model (LLM) to perform image-based plant leaf disease classification accompanied by interpretable diagnostic explanations.
Reproduction assets foundThe paper uses the public PlantVillage color dataset (11 apple/grape/potato classes, 9,385 images) and explicitly points to it in the DATA AVAILABILITY statement as the replication package data. The authors also provide a public Streamlit demonstration of their hybrid CNN–LLM system. No author analysis code or trained-Dataset · publicaper. The research was conducted for academic purposes, and no financial, commercial, or
personal relationships influenced the study design, data analysis, interpretation of results, or
preparation of the manuscript.
DATA AVAILABILITY
The data associated with this study are publicly available online in the replication package.
[https://github.com/spMohanty/PlantVillage-Dataset/tree/master/raw/color]
AUTHOR CONTRIBUTIONS
Frenky Riski Gilang Pratama: Conceptualization; Programming and coding
implementation; Methodology; Writing-Original Draft. Sugiarto Surono: Conceptualization;
Methodology; Supervision; Writing-Review & Editing. Aris Thobirin: Proofreading Paper;
Writing-Review & Editing; FunOpen asset ↗https://github.com/spMohanty/PlantVillage-Dataset/tree/master/raw/colorpdf-raw-page:10 lines:1-52Code / dataset availability confirmedCrossref · checked 14 Sept 2026
Published23 Jul 2026Journal of Intelligent Decision Making and Information ScienceCited by 0 · OpenAlex ↗
- Enhancing agricultural productivity and attaining sustainable crop management depend on the early and precise identification of leaf disease. Using state-of-the-art technologies in precision agriculture like machine learning (ML) and image processing greatly increases the effectiveness of disease detection and facilitates well-informed decision-making. But conventional manual inspection techniques are still tedious, unpredictable, and prone to errors. In order to overcome these constraints, this research offers YOLOv12-CropNet, an innovative deep learning-based system for multi-crop leaf disease diagnosis in real time. The proposed YOLOv12-CropNet approach makes use of the Convolutional Block Attention Module (CBAM) for adaptive attention, the Content-Aware Reassembly of Features (CARAFE) up-sampling module to preserve fine-grained disease characteristics, the YOLOv12 architecture improved with Ghost Convolution for effective feature extraction, and Involution layers to capture spatially specific patterns. Inspection techniques are still laborious, arbitrary, and prone to mistakes. A substantial set of data of 38 classes of both healthy and sick leaves from a variety of crops, including tomato, potato, apple, grape, corn, mango and sugarcane, was put together for training and evaluation. Experimental results show that YOLOv12-CropNet finds a suitable balance between computational speed and accurate detection. Accuracy, F1-score, recall, and precision are important performance metrics that verify the model's resilience in challenging environmental and visual circumstances. The suggested technique provides a scalable and field-deployable way to assist effective identification of diseases and precision agricultural decision-making. The proposed YOLOv12-CropNet model exhibits better performance than the other evaluated models, attaining a 98.45% peak accuracy, 98.10% precision ,98.20 % sensitivity and a 98.18% F1 score, thereby highlighting its efficacy in multi-crop leaf disease detection.
Why it matches plant phenotyping methods複数作物の葉の病徴を画像から検出・分類する深層学習手法を開発し、データセットと性能評価を伴うため、植物病害状態のフェノタイピング手法が中心である。
abstractthis research offers YOLOv12-CropNet, an innovative deep learning-based system for multi-crop leaf disease diagnosis in real time.
Reproduction assets foundThe paper uses public Kaggle datasets as its phenotyping image inputs: the PlantVillage dataset (38 crop-disease classes) and the Sugarcane Leaf Disease dataset, both cited with explicit public URLs. No author code, models, or checkpoints are reported as publicly available.Dataset · public[37] PlantVillage Dataset. Available online: https://www.kaggle.com/datasets/abdallahalidev/plantvillage-datasetOpen asset ↗pdf-page:22 lines:1-61Dataset · public[39] Sugarcane leaf Disease Dataset available online: https://www.kaggle.com/datasets/nirmalsankalana/sugarcane-Open asset ↗pdf-page:22 lines:1-61Code / dataset availability confirmedCrossref · Europe PMC · checked 5 Sept 2026
Plant disease detection under complex climatic conditions and cross-crop scenarios remains a critical challenge. To address this, we propose a novel SimAM-Inception-StyleRandomization (SIS)-YOLOv11 algorithm based on YOLOv11n for early/late blight detection on potato and tomato leaves. Our core innovations are: 1) A C3k2-SSI module integrating Style Randomization, Inception architecture, and SimAM attention to enhance cross-crop generalization; 2) A Fusion-InceptionConv module for fine-grained feature extraction under rainfall/haze noise; 3) SPPF-Inception and C2PSA-IS modules to optimize multi-scale feature fusion; 4) DepGraph pruning to reduce 47.82% parameters while improving performance. Experiments show that the pruned SIS-YOLOv11 outperforms YOLOv11n by 3.7% in precision, 6.6% in recall, 5.4% in mAP50, and 7.9% in mAP50-95, and surpasses mainstream models (Faster R-CNN, SSD, etc.). This study provides a robust, lightweight solution for automated cross-crop disease detection in complex agricultural environments.
Why it matches plant phenotyping methodsジャガイモとトマト葉の病害状態を画像から検出する新規アルゴリズムを開発し、性能比較・軽量化まで行っており、植物フェノタイピング手法が中心である。
abstractwe propose a novel SimAM-Inception-StyleRandomization (SIS)-YOLOv11 algorithm based on YOLOv11n for early/late blight detection on potato and tomato leaves.
Reproduction assets foundThe paper's image dataset (potato/tomato leaf disease images with annotations and climate-noise augmentation) is explicitly declared publicly available on Baidu AI Studio. No author code or trained model deposit is stated.Dataset · publicData Availability: All image datasets used and analyzed in this study are publicly available from the Baidu AI Studio dataset repository at the URL: https://aistudio.baidu.com/datasetdetail/245434 .Open asset ↗Baidu AI Studio · 245434lines:1-133Code / dataset availability confirmedOpenAlex · Europe PMC · Crossref · checked 5 Sept 2026
Sweet potato virus disease (SPVD) is one of the most destructive diseases affecting sweet potato production worldwide, causing severe yield losses and posing a significant threat to food security. Vision-based intelligent diagnosis has emerged as a promising solution for large-scale SPVD monitoring due to its low cost and scalability. However, existing publicly available datasets for SPVD are extremely limited and typically focus on a single task, such as disease classification or lesion segmentation, under constrained imaging conditions. This lack of comprehensive, task-oriented datasets significantly restricts the development, evaluation, and fair comparison of advanced computer vision methods for SPVD analysis. In this study, we present SPVD-Field, a task-oriented multi-task visual dataset suite composed of two independently collected sub-datasets optimized for different computer vision tasks. Rather than constructing a single homogeneous dataset, SPVD-Field is deliberately organized into two complementary task-oriented sub-datasets: SPVD-DET, designed for disease detection with bounding-box annotations, and SPVD-SEG, designed for fine-grained lesion segmentation with pixel-level masks. The two sub-datasets were independently collected using different acquisition protocols optimized for their respective tasks, while sharing a unified semantic definition of SPVD symptoms, crop growth stages, and field environments. SPVD-Field captures substantial real-world variability in imaging scale, viewpoint, illumination, background complexity, and symptom manifestation, reflecting the inherent challenges of fieldbased disease diagnosis. We provide detailed documentation of data acquisition, annotation strategies, and quality control procedures, along with baseline benchmark results for both detection and segmentation tasks to demonstrate the usability and difficulty of the dataset. By offering a structured dataset suite rather than a single-task collection, SPVD-Field aims to support diverse research directions, including detection, segmentation, multi-task learning, and disease severity analysis, and to facilitate reproducible and comparable research in SPVD-related plant phenotyping.
Why it matches plant phenotyping methodsサツマイモの病徴を対象とする画像データセットで、検出・病斑セグメンテーション、データ取得・アノテーション・品質管理、ベンチマークを中心的に提供しており、植物病害状態の画像フェノタイピング手法・データ基盤に該当する。
abstractIn this study, we present SPVD-Field, a task-oriented multi-task visual dataset suite composed of two independently collected sub-datasets optimized for different computer vision tasks.
Reproduction assets foundThe paper's core asset is the SPVD-Field dataset (SPVD-DET detection images with bounding-box annotations and SPVD-SEG segmentation images with pixel-level masks), explicitly deposited in a public repository via the data availability statement with a DOI link.Dataset · publicThe datasets presented in this study can be found in online repositories. The names of the repository/repositories and accession number(s) can be found below: https://dx.doi.org/10.21227/hq1q-jp43 .Open asset ↗10.21227/hq1q-jp43lines:664-703Code / dataset availability confirmedCrossref · checked 15 Sept 2026
Accurate estimation of evapotranspiration (ET) is critical for irrigation management in water-scarce regions such as the Middle East and North Africa (MENA). This study compares sensible heat flux (H), latent heat flux (LE), and ET derived from eddy covariance (EC) and a boundary-layer scintillometer (BLS) operated with an aperture reducer, deployed simultaneously over an irrigated late-season potato field (1.8 ha) in the Beqaa Valley, Lebanon. Satellite NDVI observations indicate that the BLS–EC overlap period (13 October–27 November 2021) sampled the crop from peak canopy (NDVI ≈ 0.85–0.90) through the onset of senescence (NDVI ≈ 0.79). The BLS (Scintec BLS900) operated along a 140 m path. The EC system showed incomplete daytime energy-balance closure, with a regression slope of ≈0.69 and a seasonal Bowen-ratio-preserving correction factor of CF = 1.24 (a ~19% closure deficit) was used. Across the matched period, daily H from the BLS was strongly correlated with EC (r ≈ 0.82) but systematically lower, with a regression slope of ≈0.63 that persisted across timescales; this scale-invariant amplitude compression reflects the path-averaged, similarity-based nature of the scintillometer retrieval rather than the EC closure deficit, which instead governs the mean bias. BLS-derived daily ET showed a systematic positive bias relative to uncorrected EC (mean bias error, MBE = +0.30 mm d−1; +16% cumulative). Applying the Bowen-ratio-preserving correction (CF = 1.24) to EC reduced this to MBE = −0.14 mm d−1 (−6%), and the residual-to-LE correction yielded MBE = −0.15 mm d−1 (−6.4%); the latter comparison is only partly independent, as both methods share the same Rn and G. The Bowen-ratio-preserving method is therefore recommended for this dataset. Overall, the BLS captured the temporal variability of crop water use well, but residual-based ET estimates require careful treatment of the energy-balance-closure gap and are sensitive to the high BLS gap fraction (61.6% of 15 min records over the overlap, exceeding 90% at night). Once EC is closure-corrected to serve as the reference, the BLS offers a cost-effective alternative for field-scale ET monitoring in the MENA region, subject to the conditional agreement documented here.
Why it matches plant phenotyping methodsジャガイモ圃場の作物蒸発散量（ET）という生理・水利用状態を対象に、ECとBLSを比較検証し、補正法や測定誤差も評価している。センサー測定法の技術的妥当性が中心であり、単なる routine measurement ではない。
abstractThis study compares sensible heat flux (H), latent heat flux (LE), and ET derived from eddy covariance (EC) and a boundary-layer scintillometer (BLS) operated with an aperture reducer
Reproduction assets foundThe paper's flux/ET datasets are only available on request from the corresponding author, so they do not qualify as public assets. However, the Supplementary Information file (available at the MDPI supplementary URL) explicitly contains experiment sensor documentation and field/canopy images (Figures S1–S4: study site,Supplement · publicmeasurements along the beam. Because these results derive from a single crop, season, and phenological window, their generalization awaits multi-site, multi-season replication spanning the full-canopy cycle—the priority for subsequent campaigns.
Supplementary Materials
The following supporting information can be downloaded at: https://www.mdpi.com/article/10.3390/s26144398/s1 , Figure S1: Study site and potato canopy—Beqaa Valley, Lebanon; Figure S2: Eddy covariance system—full tower view (peak canopy); Figure S3: EC sensor suite close-up and soil sensor installation; Figure S4: BLS900 scintillometer—transmitter, receiver, and meteorological station.
Author Contributions
Conceptualization, HOpen asset ↗lines:251-268Code / dataset availability confirmedOpenAlex · Europe PMC · checked 5 Sept 2026
Abstract Background Stomata and pavement cells are fundamental components of the leaf epidermis, jointly regulating gas exchange, water loss, and leaf surface expansion. Stomata size, aperture, density, and pavement cell morphology are critical parameters for assessing plant transpiration efficiency, epidermal growth dynamics, and adaptive responses to environmental constraints. Despite their biological importance, quantifying stomatal and pavement-cell traits remains seldom not generalized, simple, and fast enough . Manual or semi-automated approaches limit large-scale phenotyping and restrict the integration of epidermal morphology into crop-improvement pipelines aimed at developing climate-resilient varieties with optimised stomatal patterning. To address such limitations, we developed Stomatalia , a deep learning-based platform designed to automate and standardise the quantification of stomatal and pavement cell traits. The algorithm was trained on epidermal images of cultivated and wild potato and tomato genotypes grown under optimal and abiotic-stress conditions. Stomatalia automatically detects stomata and pavement cells and extracts a broad range of morphological and integrative epidermal parameters, enabling high-throughput phenotyping within a unified workflow. Results Prior to platform development, we optimised a rapid, minimally-destructive leaf-printing protocol that generates negative impressions of the leaf surface within 40–100 s. Transparent positive prints were subsequently produced and imaged under a light microscope at scale settings ranging from 20 to 200 μm. The resulting images are analysed using Stomatalia’s user-friendly web-based interface, which runs an instance-segmentation deep learning algorithm to detect, count, and calculate stomatal and pavement cell parameters. The platform outputs structured files containing raw measurements, derived integrative traits, and associated metadata, facilitating downstream statistical and physiological analyses. Algorithm evaluation on independent datasets demonstrated high performance within the validated dicot imaging domain, with F 1 -scores ranging from 0.86 to 0.94 depending on image scale, species, and resolution, and high segmentation overlap for both stomata and pavement cells. The generality of stomatal detection was also tested on spring onion, chickpea, balsam poplar, and wheat in cross-species feasibility tests, although performance was more variable in monocots, and pavement-cell segmentation remained species- and architecture-dependent. Benchmarking against another publicly available app further showed that, under the tested web interface settings and image types, Stomatalia exhibited closer agreement with manual counts and substantially faster processing times. The practical performance of Stomatalia was further tested in a proof-of-concept trial with potato plants subjected to optimal irrigation and a long, gradual drought. The platform reliably quantified epidermal traits despite variations in leaf morphology and image quality, supporting the integrated interpretation of stomatal and pavement-cell responses under stress. Conclusions We developed Stomatalia as a robust, user-friendly deep learning platform for automated, high-throughput analysis of bright-field leaf epidermal images across varying magnifications and resolutions. Stomatalia facilitates rapid, reproducible, and coordinated phenotyping of stomatal and pavement cells by integrating methodological standardisation, computational automation, and multi-trait extraction in a single analytical workflow. Its strongest current application is the analysis of high-quality dicot leaf-print images, particularly in species and imaging conditions similar to those used for model training and validation. Cross-species and benchmark analyses further define its current scope: stomatal detection can be transferred to some additional epidermal architectures, whereas robust pavement-cell segmentation in monocots or highly divergent species will require further annotation and model retraining. Within these defined boundaries, Stomatalia provides a flexible and extensible framework for studying stomatal and pavement cell morphology and environmental plasticity, while also supporting broader efforts to dissect and optimise plant responses to abiotic stress.
Why it matches plant phenotyping methods気孔・舗装細胞の形態形質を画像から自動抽出する深層学習プラットフォームを開発し、独立データで性能評価・比較検証しているため、植物フェノタイピング手法が中心である。
abstractwe developed Stomatalia , a deep learning-based platform designed to automate and standardise the quantification of stomatal and pavement cell traits.
Reproduction assets foundThe authors publicly deposited the paper's test image datasets (raw/input leaf-print images, detection outputs, manual ground-truth counts, exported datasets) and the model file on Figshare, and provide a public Google Colab demo for running the Stomatalia algorithm. Both are paper-specific, public, and actionable.Dataset · publicThe test datasets and model file used in this work are available through the following link:
https://doi.org/10.6084/m9.figshare.32532672. The test_sets.zip archive contains the test image datasets
(cross-species and benchmark analysis), including raw/input images, detection output images, manual
ground-truth counts and exported datasets.Open asset ↗Figshare · 10.6084/m9.figshare.32532672pdf-page:25 lines:1-75Code / dataset availability confirmedEurope PMC · checked 15 Sept 2026
Abstract Rice and potatoes are major crops in Bangladesh, frequently affected by major disease outbreaks that challenge food security. Inaccurate disease identification often contributes to yield losses. Recently, machine learning garnered much attention in identifying crop diseases. The present study was conducted to develop a deep learning model-based image‑analysis system that automatically identifies key diseases of Bangladeshi rice and potato, and integrates it into a web app to provide farmers with rapid, accurate diagnoses. The system employs a convolutional neural network (CNN) implemented with TensorFlow’s Sequential API, featuring ReLU-activated hidden layers and a Softmax output layer. A dataset of 4,809 images, comprising both healthy and diseased, was collected and processed through pre-processing, feature extraction, and classification. A web-based application was deployed utilizing the Python Streamlit framework. This application integrates the proposed model to predict 2 rice diseases viz. blast ( Magnaporthe oryzae ), bacterial leaf blight ( Xanthomonas campestris ), and 2 potato diseases viz. Early blight (Alternaria solani) and Late blight ( Phytophthora infestans ) from uploaded images, providing a confidence score for the predictions with approximately 92.84% for all detected diseases. The proposed model achieved a training accuracy of 0.9357, a validation accuracy of 0.8983, and a test accuracy of 0.9333. The developed web application indicates strong diagnostic performance for four major diseases, offering Bangladeshi farmers an accessible tool to make timely management decisions.
Why it matches plant phenotyping methodsイネ・ジャガイモ葉の病徴を画像から分類するCNNと実用Webアプリを開発・評価しており、植物の病害状態推定が中心的な方法論的貢献である。
abstractdevelop a deep learning model-based image‑analysis system that automatically identifies key diseases of Bangladeshi rice and potato
Reproduction assets foundThe paper's rice/potato leaf disease image dataset partially comes from Kaggle, and the data availability statement points to PlantVillage for additional image data; both are public image assets used for the paper's CNN phenotyping/disease-classification analysis. No author analysis code, trained model checkpoints, or专Dataset · publicch, M.Y.H. analyzed the data, A.A.J.,
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M.Y.H. and M.S. wrote this manuscript, M.R.I., F.M.A. and S.O.N. reviewed and edited the
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manuscript. All authors have read and agreed to the published version of the manuscript.
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Data availability statement
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Some of the datasets used in this study was obtained from Kaggle
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(https://www.kaggle.com/datasets). Additional datasets used and/or analyzed during the current
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study are available from the corresponding author upon reasonable request. More image data can
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Some of the datasets used in this study was obtained from Kaggle
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(https://www.kaggle.com/datasets). Additional datasets used and/or analyzed during the current
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study are available from the corresponding author upon reasonable request. More image data can
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be found at https://www.plantvillage.org/en/plant_images
459Open asset ↗PlantVillagepdf-raw-page:24 lines:1-57Code / dataset availability confirmedEurope PMC · checked 5 Sept 2026
Abstract Potatoes are one of the major crops eaten in developing countries; however, their production is falling due to various diseases. Early identification and detection of potato leaf diseases play a vital role in improving potato quality and quantity. Existing methods are either computationally resource intensive or lack trust in their decision-making process, which makes them difficult to deploy for real-time potato disease classification and limits its accessibility. To mitigate these limitations, this study proposed an attention-enhanced MobileNetV2 with a squeeze-and-excitation architecture, which balances high accuracy with low computational resources. This method incorporates the strength of MobileNetV2 and Squeeze-and-excitation networks. A total of 2152 images of early blight, late blight, and healthy leafs were obtained from the Kaggle public repository, which are partitioned into 70% training, 20% validation, and 10% testing and were utilized to train, validate, and test the proposed model. The MobileNetV2 backbone is utilized for feature extraction, and then a squeeze-and-attention block is used to recalibrate the feature maps by focusing on important features and suppressing irrelevant ones. Gradient-weighted Class Activation Mapping (Grad-CAM) was implemented to visualize the most relevant region of the leaf for decision-making, which increases model interpretability and user trust. The proposed model achieves a remarkable performance of 99% testing accuracy with 9.41 MB total parameters. The proposed model is suitable for real-time potato leaf disease detection and classification, which can be easily accessible to agricultural stakeholders, including farmers, and contributes to food security.
Why it matches plant phenotyping methodsジャガイモ葉の病害状態を画像から分類する深層学習手法を提案・評価しており、植物表現型（病害状態）の取得・推定が中心である。
abstractthis study proposed an attention-enhanced MobileNetV2 with a squeeze-and-excitation architecture, which balances high accuracy with low computational resources.
Reproduction assets foundThe paper's phenotyping inputs are 2152 potato leaf images (early blight, late blight, healthy) obtained from a public Kaggle repository, explicitly stated as publicly available in the Declarations. No author analysis code is shared (Code Availability: Not applicable), and no trained model checkpoints are released.Dataset · publicAvailability of Data: The datasets generated during and/or analyzed during the current study are
publicly available at https://www.kaggle.com/datasets/faysalmiah1721758/potato-dataset.Open asset ↗Kaggle · faysalmiah1721758/potato-datasetpdf-page:23 lines:1-35Code / dataset availability confirmedEurope PMC · checked 5 Sept 2026
This paper explores the use of optimized convolutional neural networks (CNNs) to classify diseases affecting potato leaves using TensorFlow-2. The dataset, sourced from Kaggle's Plant Village repository, includes 152 images of healthy potato leaves and 1000 images each of early and late blight. The methodology covers data preparation, model architecture design, training, evaluation, and deployment. During data preparation, the data set was split into training sets (80%) and testing sets (20%), with images resized to 128x128 pixels. The Deep Learning (DL) models built using CNN with 4 different optimizers (ADAM, SGD, RMSPROP, and ADAMAX) and trained using a sparse categorical cross-entropy loss function, include multiple convolutional and pooling layers for feature extraction, and fully connected layers for classification. Early stopping was used to prevent overfitting. Model performance was assessed using accuracy, loss curves, confusion matrix, ROC curve, precision recall curve, classification report, and F1 score. In addition, we have used data augmentation to balance the dataset by increasing healthy potato leaves 6 times and the use of Ensemble Deep Learning (EDL). EDL10 which contains DL1 (CNN + ADAM), DL2 (CNN + SGD), DL3 (CNN + RMSPROP) and DL4 (CNN + ADAMX) performs best with a accuracy score of 97.0%. This highlights the importance of data balancing and the use of the ensemble classification approach for the detection of blight in Potato Leaves.
Why it matches plant phenotyping methodsジャガイモ葉の病害状態を画像から分類するCNN・アンサンブル手法の設計、評価、データ拡張が研究の中心であり、植物病害フェノタイピング手法に該当する。
abstractThis paper explores the use of optimized convolutional neural networks (CNNs) to classify diseases affecting potato leaves using TensorFlow-2.
Reproduction assets foundThe paper uses the public Kaggle PlantVillage potato leaf image dataset and archives its complete analysis source code on Zenodo with explicit availability statements and URLs.Code · publicThe complete source code is hosted in a DOI-minting repository and has been archived on Zenodo to ensure long-term accessibility and reproducibility. The code is released under an open-source license. The archived version corresponding to this publication is available at : https://doi.org/10.5281/zenodo.19624017Open asset ↗Zenodo · 10.5281/zenodo.19624017lines:252-314Dataset · publicThe datasets generated and/or analysed during the current study are available at : PlantVillage Dataset, accessed from https://www.kaggle.com/datasets/abdallahalidev/plantvillage-dataset.Open asset ↗Kaggle · plantvillage-datasetlines:252-314Code / dataset availability confirmedEurope PMC · checked 15 Sept 2026
Background High-throughput automated image analysis holds great promise for plant breeding by enabling faster, more accurate assessment of traits relevant to crop improvement. Imaging-based systems, such as the CropReporter, allow automated quantification of photosynthetic parameters like PSII efficiency under ambient light from a top-down 2D perspective. However, standard analysis tools average values across the 2D top view, overrepresenting upper leaves and underrepresenting those in the lower canopy. Upper leaves may occlude lower ones, and due to the pinhole projection of the camera, lower leaves of the same size appear smaller in the image. Consequently, vertical heterogeneity in PSII efficiency within the canopy cannot be resolved using a single 2D image. Results To address these issues, we integrated top-view PSII efficiency data (by CropReporter) with 3D structural data from RGB point clouds (by MaxiMarvin). Alignment accuracy between MaxiMarvin and CropReporter was high, with R² ≥ 0.98 for the x-axis and R² ≥ 0.99 for the y-axis. The method was tested using Chenopodium quinoa, Glycine max, and Solanum tuberosum, exposed to salinity, waterlogging and drought stress respectively. In Chenopodium quinoa, it allowed precise determination of when senescence began in the lower leaves. In Solanum tuberosum, the reduction in PSII efficiency by drought was the same for all leaf layers, while in Glycine max, waterlogging stress most strongly affected the middle layer of the canopy. Conclusions This framework enables the 3D mapping of PSII efficiency across the vertical plant profile by combining top-view chlorophyll fluorescence imaging (CropReporter) with 3D structural data (MaxiMarvin). It reveals vertical variation in photosynthetic activity across canopy layers. With standard 2D chlorophyll fluorescence imaging it is difficult to distinguish between non-photosynthetic tissues like flower heads and lower layers of leaves, that might have the same PSII values. Using height-based filtering, taking data from the 3D mapping, such distinction can be made with the method presented in this paper. This allows estimating the PSII efficiencies of leaves only. By capturing layer-specific responses to abiotic stress and developmental changes, the method provides physiologically relevant input for crop growth modelling and highlights the importance of accounting for canopy structure in photosynthetic analyses.
Why it matches plant phenotyping methods2Dクロロフィル蛍光によるPSII効率を3D植物構造へ投影し、群落層別の葉の生理形質を推定する手法の開発・検証が中心である。
abstractTo address these issues, we integrated top-view PSII efficiency data (by CropReporter) with 3D structural data from RGB point clouds (by MaxiMarvin).
Reproduction assets foundThe authors state that the analysis scripts (2D–3D alignment pipeline) and the phenotyping data used in the study are included with the publication as supplementary material, accessible via the article DOI. This is a paper-specific, publicly available asset containing the authors' analysis code and data.Dataset · publicThe scripts and the data that were used in the current study are available and added to this publication.Open asset ↗lines:143-180Code / dataset availability confirmedEurope PMC · Crossref · checked 15 Sept 2026
Abstract Current phytopathological diagnostic systems rely on manual inspections or laboratory analyses, which delay early detection and limit in-field responsiveness. Phytopathogenic fungal diseases pose a persistent threat to food security, directly affecting the productivity of essential crops such as potato ( Solanum tuberosum ) and tomato ( Solanum lycopersicum ) [1]–[5]. Among these diseases, Phytophthora infestans , the causal agent of late blight, is characterized by its high virulence and rapid spread, capable of generating significant losses in short periods when detection occurs too late [3], [4]. To address this issue, a computer vision and deep learning–based system for multistage detection of fungal infections in potato and tomato crops is proposed. The system comprises a convolutional neural network optimized for edge processing and a mobile robotic platform equipped with a manipulator arm for localized treatment application. The developed model was deployed on a Raspberry Pi 4 connected to a 12-MP Raspberry Pi Camera Module 3 NoIR, responsible for acquiring RGB images in the field. The proposed network was compared with reference architectures—ResNet-50, VGG16, MobileNetV2, and Inception-v3—within a four-stage detection pipeline: crop identification, health-state classification, infection diagnosis, and foliar severity estimation. A dataset of 18,200 images obtained from publicly accessible online sources, under diverse lighting and background conditions, was used, partitioned into 70% for training, 20% for validation, and 10% for testing. Preliminary results show an average accuracy in the range of 0.90–0.92, with inference latencies below 60 ms per image, ensuring smooth performance on the Raspberry Pi 4 without requiring cloud connectivity. Additionally, the network demonstrated higher sensitivity to visual variations compared to the baseline models.
Why it matches plant phenotyping methods植物病害の健康状態・感染・葉面重症度を画像から推定するコンピュータビジョン手法を開発・比較検証しており、植物表現型取得が中心である。
abstracta computer vision and deep learning–based system for multistage detection of fungal infections in potato and tomato crops is proposed
Reproduction assets foundThe paper's CNN training data are two publicly available third-party plant-disease image datasets (Mendeley Data and Kaggle Plant Village) with explicit URLs in the Data Availability Statement. The authors' field-test images and experimental records are only available on request, and no analysis code or trained model/сDataset · public10
Network, DOI: 10.17632/tywbtsjrjv.1, available at
https://data.mendeley.com/datasets/tywbtsjrjv/1, and the
Kaggle Plant Village dataset, available at
https://www.kaggle.com/datasets/emmarex/plantdisease.The field-test images and experimental records generated during
the current study during the real-world evaluation of the
embedded-vision system are available from the corresponding
author on reasonable request.
IX. REFERENCOpen asset ↗10.17632/tywbtsjrjv.1pdf-raw-page:11 lines:1-98Dataset · public10
Network, DOI: 10.17632/tywbtsjrjv.1, available at
https://data.mendeley.com/datasets/tywbtsjrjv/1, and the
Kaggle Plant Village dataset, available at
https://www.kaggle.com/datasets/emmarex/plantdisease.The field-test images and experimental records generated during
the current study during the real-world evaluation of the
embedded-vision system are available from the corresponding
author on reasonable request.
IX. REFERENCES
[1] P. W. Crous, A. Y. Rossman, M. C. Aime, W. C. Allen, T.
Burgess, J. Z. Groenewald y L. A. CastlebuOpen asset ↗Kagglepdf-raw-page:11 lines:1-98Code / dataset availability confirmedEurope PMC · checked 5 Sept 2026
Plant diseases are a major problem for farmers around the world, reducing crop yields. The absence of expertise makes plant disease detection difficult and complicated. Plant disease detection is made easier by deep learning algorithms; however, they are computationally demanding and need huge training datasets. This research work proposes a novel Conv-7 DCNN model with modified ParNet attention layer to classify plant leaves into distinct categories with improved accuracy. Because of its architecture, the proposed network can identify leaf diseases with more accuracy by extracting the wider range of features from the images. The proposed Conv-7 DCNN model classifies the leaf diseases of three plants such as tomato, potato, and pepper-bell into fifteen categories. The CNN model is trained using publicly accessible Kaggle dataset, utilising image augmentation techniques. It is evident from the simulation results that the proposed model outperforms several pre-trained, and other trending deep learning models. Proposed model achieves 99.18% classification accuracy with an average precision of 99.17% and area under the curve (AUC) of 1, making this model highly effective in leaf diseases detection. Additionally, Conv-7 DCNN achieved high FPS of 112.49, low inference time of 18.34 s, and low GFLOPS of 13.98, making it suitable for real-time applications in smart agriculture systems.
Why it matches plant phenotyping methods植物葉画像から病害状態を推定する深層学習モデルを開発・比較しており、病害表現型の取得・分類手法が研究の中心である。
abstractThis research work proposes a novel Conv-7 DCNN model with modified ParNet attention layer to classify plant leaves into distinct categories with improved accuracy.
Reproduction assets foundThe paper's plant-phenotyping measurements (leaf disease classification of tomato, potato, and pepper-bell) are based on a publicly available Kaggle dataset explicitly named in the Data Availability statement. No author analysis code, trained model checkpoints, or other paper-specific assets are disclosed.Dataset · publicThe dataset is available online at https://www.kaggle.com/datasets/emmarex/plantdisease.Open asset ↗Kaggle · emmarex/plantdiseasehtml-lines:824-854Code / dataset availability confirmedCrossref · Europe PMC · checked 5 Sept 2026
Abstract The precise classification of plant diseases is crucial for ensuring food security for all people and boosting agricultural productivity. Although there has been significant progress in this field using deep learning approaches, cross-dataset training hasn’t drawn as much attention from researchers as intra-dataset training has. Moreover, very few models have successfully blended intra-dataset and cross-dataset training approaches. This paper proposes a novel attention-based Convolutional Neural Network (CNN) to overcome these limitations. The model improves feature extraction and classification accuracy across multiple datasets by using attention mechanisms. It was tested on five datasets (Digipathos, Northern Leaf Blight (NLB), PlantVillage, PlantDoc, and the CD&S dataset) that covered leaf diseases of both corn and potatoes. During intra-dataset training, the model achieved the highest classification accuracy of 99.38% when trained on images of potato leaves from the PlantVillage dataset. During cross-dataset training, the model exhibited the highest average classification accuracy of 82.93% for corn leaf diseases when trained on images from the CD&S dataset with their backgrounds removed. When compared to the techniques taken into consideration in this study under comparable experimental conditions, the results demonstrate improved performance. This study shows how the model may be flexible for both intra- and cross-datasets, offering a flexible way to categorize diseases that affect plants. Because of its ability to generalize across different datasets, it may be helpful in real-world agricultural applications with a wide variety of image quality and situations. This encourages the advancement of precision farming techniques and disease control.
Why it matches plant phenotyping methods植物葉の画像から病害状態を分類するCNN手法の開発・データセット間検証が中心であり、植物病害の表現型推定に該当する。
abstractThis paper proposes a novel attention-based Convolutional Neural Network (CNN) to overcome these limitations.
Reproduction assets foundThe paper's plant disease classification experiments rely on five publicly available leaf-image datasets, each cited with an explicit public access URL in the reference list: PlantVillage (GitHub), PlantDoc (GitHub), Digipathos (Embrapa), NLB (SciDB), and CD&S (OSF). No author analysis code or trained model checkpoint,Dataset · publicHughes, D., & Salathé, M. (2015). An open access repository of images on plant health to enable the development of mobile disease diagnostics. arXiv preprint arXiv:1511.08060. Dataset accessed via GitHub: https://github.com/spMohanty/PlantVillage-DatasetOpen asset ↗GitHub · spMohanty/PlantVillage-Datasethtml-lines:1013-1082Dataset · publicDataset available at: https://github.com/pratikkayal/PlantDoc-DatasetOpen asset ↗GitHub · pratikkayal/PlantDoc-Datasethtml-lines:979-1012Dataset · publicCD&S dataset: Handheld imagery dataset acquired under field conditions for corn disease identification and severity estimation. arXiv preprint arXiv:2110.12084. Dataset available at: https://osf.io/s6ru5/files/osfstorageOpen asset ↗OSF · s6ru5html-lines:1013-1082Code / dataset availability confirmedEurope PMC · checked 15 Sept 2026
This paper presents a three-phase deep learning framework comprising (i) multi-modal data acquisition from drones and satellites, (ii) standardized pre-processing including interpolation for missing temporal data, and (iii) CNN-based feature extraction for real-time health classification. This framework relies on a mathematical model based on neural networks that classifies and detects the condition of agriculture, removing the reliance on manual tasks and subjective diagnosis. This paper focuses on three main aspects of our framework: data acquisition, training and prediction. Data is collected using sensors like drones, cameras, and satellite imagery and is pre-processed to filter out noise and improve quality. The training part uses CNN to learn features from the data and become more meaningful. The prediction part of the task classifies, and diagnoses crop health through the trained model using the features. The framework accuracy for crops such as maize, potato, and wheat has been tested and yielded over 90% accuracy. The novelty of this work resides in the development of a multi-modal deep learning architecture that fuses macro-scale satellite imagery with micro-scale drone and IoT sensor data to improve diagnostic reliability. The framework was validated on a multi-source agricultural dataset using a 70% training, 15% validation, and 15% testing protocol. Experimental results demonstrate an accuracy exceeding 90% for staple crops. Using this framework can increase the visibility and quality of information maintained for crop health and improve the decision-making routine of farmers in real time. Additionally, automation of this process can significantly reduce labor costs and increase productivity per crop. Implementing this framework can contribute to precision agriculture and sustainable management practices.
Why it matches plant phenotyping methods作物の健康状態を植物の表現型・状態として推定するマルチモーダル画像・センサ基盤と深層学習手法を開発し、複数作物・データセットで検証しているため、方法が中心である。
abstractThis paper presents a three-phase deep learning framework comprising (i) multi-modal data acquisition from drones and satellites, (ii) standardized pre-processing including interpolation for missing temporal data, and (iii) CNN-based feature extraction for real-time health classification.
Reproduction assets foundThe article's Data availability section points to a public Kaggle dataset used for the crop classification/health diagnosis experiments, matching an allowed URL. No code or model checkpoints are disclosed.Dataset · publicript. The research work was guided by Dr. B.D.K.P. The Corresponding author Shshank Chaube collaborated for review and supervision. All authors reviewed the manuscript.
Funding
Open access funding provided by Symbiosis International (Deemed University). No funds, grants, or other support was received.
Data availability
Dataset: https://www.kaggle.com/datasets/bhagvendersingh/precision-agriculture-dataset .
Declarations
Competing interests
The authors declare no competing interests.
Ethical approval
This article does not contain any studies with human participants or animals performed by any of the authors.
References
1. Mohyuddin, G. et al. Evaluation of machine learning approaches for preciOpen asset ↗kaggle · bhagvendersingh/precision-agriculture-datasetlines:473-545Code / dataset availability confirmedCrossref · checked 14 Sept 2026
Plant Leaf Diseases represent a significant risk to global agricultural production. Crops ranging from Peppers and Tomatoes to Potatoes are affected by these diseases. Traditional methods of identifying leaf diseases based primarily on visual inspection have historically been slow and relatively inaccurate. A deep learning-based solution for the automated identification of plant leaf diseases utilizes Convolutional Neural Networks (CNNs) as the primary methodology. To identify leaf images into 15 disease categories, both pre-trained models such as VGG16, EfficientNetB3, Inception V3 and a custom CNN model were used. Using pre-trained models to allow for the use of Transfer Learning helps to mitigate some of the issues associated with computational resource limitations and data limitations in providing faster convergence rates and higher accuracy when compared to training a model from scratch. The Plant Village image collection which contains over 20,000 images of different plant leaf diseases was utilized for training and testing purposes. Each model's performance was evaluated based on its accuracy, loss and generalization capabilities. Additionally, each model was fine-tuned through hyperparameter optimization. As a result, the model that achieved the highest validation accuracy rate of 95% was the EfficientNetB3 model while the second highest accuracy rate was achieved by the Inception V3 model at 92%. This methodology provides an excellent answer to addressing early disease detection, enabling farmers to take the necessary actions quickly to reduce their losses and maximize their harvest.
Why it matches plant phenotyping methods植物葉画像から病害状態を推定する深層学習手法を比較・評価しており、病害フェノタイピングと手法検証が研究の中心です。
abstractA deep learning-based solution for the automated identification of plant leaf diseases utilizes Convolutional Neural Networks (CNNs) as the primary methodology.
Reproduction assets foundThe paper's plant-phenotyping measurements (CNN classification of 15 leaf disease classes) were performed on the public PlantVillage-derived Kaggle 'Plant Disease Dataset' by E. Marrex, which the authors cite as their training/testing image source. No author analysis code, trained model checkpoints, or paper-specific衍生Dataset · publicD. E. Popescu, M. K. Chowdary, and J. Hemanth, "Deep learning-based leaf
disease detection in crops using images for agricultural applications," Agronomy, vol. 12, no. 10,
p. 2395, 2022. doi: 10.3390/agronomy12102395. Available:
https://doi.org/10.3390/agronomy12102395.11. E. Marrex, "Plant Disease Dataset," Kaggle, Available:
https://www.kaggle.com/datasets/emmarex/ plantdisease. [Accessed: 03- Apr-2025].Open asset ↗Kagglepdf-raw-page:12 lines:1-8Code / dataset availability confirmedCrossref · checked 14 Sept 2026
Published15 Feb 2026Journal of Artificial Intelligence and Engineering Applications (JAIEA)Cited by 0 · OpenAlex ↗
Monitoring plant health is an important factor in maintaining agricultural productivity. Manual identification of leaf diseases requires expert knowledge and is prone to errors due to visual similarities among disease symptoms. This study aims to develop a plant leaf disease classification system based on digital images using a Convolutional Neural Network (CNN) approach. The dataset consists of plant leaf images representing three disease classes: Corn–Common rust, Potato–Early blight, and Tomato–Bacterial spot. Prior to model training, the images undergo preprocessing steps including image resizing and pixel normalization. The performance of the CNN model is evaluated using a testing dataset that is not involved in the training process, employing accuracy, confusion matrix, precision, recall, and F1-score as evaluation metrics. Experimental results show that the proposed model achieves a test accuracy of 95.56%, with balanced performance across all disease classes. In addition to quantitative evaluation, the trained model is implemented in a Streamlit-based application, allowing users to upload plant leaf images and obtain disease classification results interactively. The findings indicate that the CNN-based approach is effective for plant leaf disease classification and has potential application as an early decision-support system for plant health monitoring.
Why it matches plant phenotyping methods植物葉の画像から病害状態を推定するCNN分類法を開発し、独立テストデータで性能評価しているため、植物フェノタイピング手法が中心である。
abstractThis study aims to develop a plant leaf disease classification system based on digital images using a Convolutional Neural Network (CNN) approach.
Reproduction assets foundThe paper's phenotyping input is a publicly available PlantVillage image dataset (900 leaf images across three disease classes) obtained from Kaggle, with an explicit authors' URL. No author analysis code or trained model is publicly deposited.Dataset · publicleaf disease images obtained from the PlantVillage Dataset, which is publicly available through the Kaggle platform [17]. The dataset is
organized using a folder-based class structure, where each folder represents a specific leaf disease category. In this study, three disease
classes are used—Corn–Common rust, Potato–Early blight, and Tomato–Bacterial spot—with 300 images per class, resulting in a total of
900 images.Open asset ↗Kagglepdf-page:3 lines:1-51Code / dataset availability confirmedEurope PMC · checked 5 Sept 2026
Potato leaf diseases, if left undetected, threaten food security in agricultural economies and cause substantial crop losses. To address this critical challenge, we developed an AI-based system called the Enhanced Single Shot Multibox Detector(EF-SSD), a variant of SSD that integrates multiscale feature fusion and Squeeze-and-Excitation attention to improve fine-grained lesion detection. The enhanced model processes high-resolution images (512×512 pixels) and analyzes leaves at ten magnification levels, enabling it to identify even minor signs of infection. The inclusion of Squeeze-and-Excitation filters allows the system to focus more effectively on characteristic disease patterns, increasing detection precision. After scanning the leaves, the system applies advanced image processing techniques to localize disease regions and assess their severity. We evaluated EF-SSD using 2,500 labeled potato leaf images representing healthy plants and cases of early and late blight. The proposed model achieved a mean Average Precision (mAP) of 97% at 0.5 IoU, an F1-score of 95%, and an Intersection over Union (IoU) of 89%, outperforming advanced detectors such as YOLOv5, YOLOv8, RetinaNet, and Faster R-CNN across all metrics. It also delivers real-time inference at 47 FPS, confirming its suitability for on-field deployment. An ablation study further demonstrates the effectiveness of SE blocks and extended feature hierarchies in enhancing detection accuracy. These outcomes highlight EF-SSD’s potential as a reliable, efficient, and scalable tool for smart agriculture and early crop disease management.
Why it matches plant phenotyping methodsジャガイモ葉の病斑を画像から検出・局在化し、病害の重症度を評価する深層学習手法を開発・検証しており、植物表現型取得が中心である。
abstractwe developed an AI-based system called the Enhanced Single Shot Multibox Detector(EF-SSD)
Reproduction assets foundThe paper's Data Availability statement explicitly provides a public GitHub repository with the authors' analysis/training code and a public Google Drive link to the custom 2,500-image potato leaf disease dataset with Pascal VOC annotations used in this study.Code · publicThe code implemented in this study is openly available at the following GitHub repository: https://github.com/bhavanisravan/potato-leaf-diseases-code.Open asset ↗bhavanisravan/potato-leaf-diseases-codehtml-lines:414-439Dataset · publicThe dataset used for training and evaluation can be accessed at: https://drive.google.com/drive/folders/1Yin9zp0gQKwqJ0LD3GWdLq_V_idLO2bG?usp=sharing.Open asset ↗html-lines:414-439Code / dataset availability confirmedEurope PMC · checked 5 Sept 2026
Introduction Potato foliar diseases, particularly early and late blight, pose a serious threat to yield and food security, yet reliable visual recognition remains challenging due to cultivar heterogeneity, variable symptom expression, and acquisition noise in field-like imagery. To address these issues, we propose PotatoLeafNet, a two-stage deep learning framework that combines a fixed-sequence image-augmentation pipeline with a compact, task-optimized 11-layer convolutional neural network (CNN) using 3 × 3 kernels for robust, data-efficient classification of potato leaf conditions (Healthy, Early Blight, Late Blight). Methods We construct a dataset of 4,072 labeled potato leaf images from the PlantVillage-Potato subset and standardize all inputs to 224 × 224 RGB tensors with pixel intensities normalized to [0,1]. A balanced, fixed-order augmentation policy-comprising rotation, translation, shear, zoom, horizontal flipping, brightness adjustment, and channel jitter-is applied exclusively to the training split, increasing it to 6,000 images (2,000 per class) while keeping the validation and test sets free of synthetic samples. The second stage consists of an 11-layer CNN implemented in TensorFlow/Keras and trained with categorical cross-entropy loss and the Adam optimizer under a unified training and evaluation protocol. Performance is benchmarked against strong CNN and hybrid baselines, including ResNet-50 + VGG-16, VGG-16 + MobileNetV2, MobileNetV2, and Inception-V3. Results On the PlantVillage-Potato test set, PotatoLeafNet achieves 98.52% accuracy, 98.67% macro-precision, 99.67% macro-recall, 99.16% macro-F1, and 1.00 macro-AUC, outperforming all baseline models under identical preprocessing and training conditions. In particular, PotatoLeafNet surpasses ResNet-50 + VGG-16 (97.10% accuracy, AUC 0.98), VGG-16 + MobileNetV2 (94.80% accuracy, AUC 0.93), MobileNetV2 (93.20% accuracy, AUC 0.92), and Inception-V3 (92.50% accuracy, AUC 0.91). Short 10-epoch runs yield stable convergence (training accuracy 88.22%, validation accuracy 86.91%, test accuracy 88.15%), indicating efficient learning from the augmented distribution. Discussion The results demonstrate that explicitly coupling a fixed sequential augmentation stage with a lightweight 3×3-kernel CNN enables high tri-class accuracy, strong recall for disease classes, and improved generalization relative to deeper or fused architectures, without incurring substantial computational cost. By emphasizing disease-relevant structure while limiting overfitting, PotatoLeafNet provides a practical and resource-efficient solution for automated screening of potato leaf health in real-world agronomic settings, supporting timely and data-driven disease management.
Why it matches plant phenotyping methodsジャガイモ葉の病害状態を画像から分類するCNN手法を開発し、複数モデルとの性能比較で検証しており、植物フェノタイピング手法が研究の中心である。
abstractwe propose PotatoLeafNet, a two-stage deep learning framework
Reproduction assets foundThe paper's potato leaf disease classification is built on two publicly available Kaggle image datasets: the PlantVillage dataset (source of the PlantVillage-Potato subset) and the Potato Leaf Disease Dataset (PLD, 4,072 images across Healthy, Early Blight, Late Blight). Both are cited with public Kaggle URLs in the 3.Dataset · publicPotato Leaf Disease Dataset ( 2025 ). Kaggle dataset 2024. Available online at: https://www.kaggle.com/datasets/rizwan123456789/potato-disease-leaf-datasetpldOpen asset ↗Kaggle · rizwan123456789/potato-disease-leaf-datasetpldlines:788-867Dataset · publicPlant Village Dataset ( 2024 ). Kaggle [dataset]. Available online at: https://www.kaggle.com/datasets/mohitsingh1804/plantvillage (Accessed April 29, 2024).Open asset ↗Kaggle · mohitsingh1804/plantvillagelines:788-867Code / dataset availability confirmedEurope PMC · checked 15 Sept 2026
Potato plants are highly vulnerable to numerous diseases that can substantially affect both yield and quality. Conventional approaches for detecting these diseases are often labor-intensive, slow, and prone to inaccuracies, particularly under variable environmental conditions. This study presents a hybrid deep learning architecture, termed potato leaf diseases DenseNet (PLDNet), which integrates a DenseNet-based convolutional neural network with a Transformer-based attention module to accurately classify potato leaf diseases. Furthermore, an adaptive parametric activation function, referred to as Adaptive Flatten p-Mish (AFpM), is proposed to enhance the model's learning flexibility and representational capacity. When evaluated on the PlantVillage and Mendeley datasets, PLDNet attains classification accuracies of 99.54% and 87.50%, respectively, surpassing contemporary state-of-the-art models and activation techniques. The proposed framework exhibits strong generalization performance and offers a scalable, efficient approach for automated plant disease identification. To highlight the novelty, the proposed AFpM activation function introduces a learnable parameter enabling adaptive nonlinearity, improving over Mish, Swish, and PFpM activation functions through dynamic gradient control. AFpM improves accuracy by 2.52% on Mendeley dataset, and 1.93% on PlantVillage dataset compared to PFpM, and by more than 3% compared to Swish and Mish.
Why it matches plant phenotyping methods葉画像から植物病害状態を推定する深層学習モデルと新規活性化関数を開発・評価しており、植物フェノタイピング手法が研究の中心である。
abstractThis study presents a hybrid deep learning architecture, termed potato leaf diseases DenseNet (PLDNet), which integrates a DenseNet-based convolutional neural network with a Transformer-based attention module to accurately classify potato leaf diseases.
Reproduction assets foundThe paper's phenotyping inputs are two public leaf-image datasets used directly for its classification experiments: the Mendeley Potato Leaf Disease dataset (explicitly deposited with URL) and the PlantVillage dataset via Kaggle (explicitly linked in Data availability). The authors' PLDNet code is only promised 'upon' Dataset · publicsis. A.M initially drafted the paper, and all the authors (A.M, A.C, and N.A) reviewed and edited the paper.
Funding
Open access funding provided by University of Inland Norway. INN have subscription for open-access (OA) publication in Scientific Reports, Nature.
Data availability
The dataset used in this study is available at: https://data.mendeley.com/datasets/ptz377bwb8/1 and https://www.kaggle.com/datasets/emmarex/plantdisease .
Code availabilityOpen asset ↗Mendeley · ptz377bwb8/1lines:1390-1403Dataset · publicthors (A.M, A.C, and N.A) reviewed and edited the paper.
Funding
Open access funding provided by University of Inland Norway. INN have subscription for open-access (OA) publication in Scientific Reports, Nature.
Data availability
The dataset used in this study is available at: https://data.mendeley.com/datasets/ptz377bwb8/1 and https://www.kaggle.com/datasets/emmarex/plantdisease .
Code availabilityOpen asset ↗Kaggle · emmarex/plantdiseaselines:1390-1403Code / dataset availability confirmedarXiv · OpenAlex · checked 13 Sept 2026
Potato yield is a key indicator for optimizing cultivation practices in agriculture. Potato yield can be estimated on harvesters using RGB-D cameras, which capture three-dimensional (3D) information of individual tubers moving along the conveyor belt. However, point clouds reconstructed from RGB-D images are incomplete due to self-occlusion, leading to systematic underestimation of tuber weight. To address this, we introduce PointRAFT, a high-throughput point cloud regression network that directly predicts continuous 3D shape properties, such as tuber weight, from partial point clouds. Rather than reconstructing full 3D geometry, PointRAFT infers target values directly from raw 3D data. Its key architectural novelty is an object height embedding that incorporates tuber height as an additional geometric cue, improving weight prediction under practical harvesting conditions. PointRAFT was trained and evaluated on 26,688 partial point clouds collected from 859 potato tubers across four cultivars and three growing seasons on an operational harvester in Japan. On a test set of 5,254 point clouds from 172 tubers, PointRAFT achieved a mean absolute error of 12.0 g and a root mean squared error of 17.2 g, substantially outperforming a linear regression baseline and a standard PointNet++ regression network. With an average inference time of 6.3 ms per point cloud, PointRAFT supports processing rates of up to 150 tubers per second, meeting the high-throughput requirements of commercial potato harvesters. Beyond potato weight estimation, PointRAFT provides a versatile regression network applicable to a wide range of 3D phenotyping and robotic perception tasks. The code, network weights, and a subset of the dataset are publicly available at https://github.com/pieterblok/pointraft.git.
Why it matches plant phenotyping methods部分点群からジャガイモ塊茎重量を推定する3D深層学習手法を開発・評価しており、植物形質取得が研究の中心である。
abstractwe introduce PointRAFT, a high-throughput point cloud regression network that directly predicts continuous 3D shape properties, such as tuber weight, from partial point clouds.
Reproduction assets foundThe paper publicly releases its authors' analysis code and trained network weights on GitHub, and a subset of its potato tuber partial point cloud dataset (with ground truth weights) on Hugging Face. Both are paper-specific, public, and actionable.Code · publicThe code, network weights, and a subset of the dataset are publicly available at https://github.com/pieterblok/pointraft.git .Open asset ↗pieterblok/pointraftlines:1-93Dataset · publicA subset of the datasets generated and/or analyzed during this study is publicly available at: https://huggingface.co/datasets/UTokyo-FieldPhenomics-Lab/3DPotatoTwinOpen asset ↗UTokyo-FieldPhenomics-Lab/3DPotatoTwinlines:447-463Code / dataset availability confirmedEurope PMC · checked 5 Sept 2026
Timely and precise detection of diseases on plants is crucial for minimizing losses during crop production in order to sustain food supply demands worldwide. In this work, deep learning (DL) was used to develop an automatic disease identification system for the leaves of potato and mango plants using two publicly available datasets, the PlantVillage Potato Leaf Disease (2,152 images) dataset and the Kaggle Mango Leaf Disease dataset (4,000 images). Images were pre-processed, augmented, and split into training and testing datasets (80:20), to enable better model generalization. Four deep learning architectures, namely Convolutional Neural Networks (CNN), AlexNet, Residual Networks (ResNet), and EfficientNet, were evaluated in the context of multi-class disease classification. The baseline CNN achieved a training accuracy of 93.67% and a testing accuracy of 92.61%, with balanced precision and recall (92.5%), thus providing a very strong feature extraction and classification capability. AlexNet showed moderate performance (91.3% training, 90.2% validation), and a very small overfitting was observed. ResNet had an efficient convergence, and attained 96.7% validation accuracy in just a few epochs, thus pointing out the advantage of residual connections in the context of deeper learning. EfficientNet surpassed all the other architectures, since it reached a training accuracy of 98.2% and a validation accuracy of 97.8%, with very small loss (≈ 0.015) and no overfitting, thus proving to have the best generalization ability. The models demonstrated stability and discriminative ability with the support of confusion matrices and accuracy and loss plots produced on an epoch-wise basis. Therefore, the findings indicate that DL models can be adapted for real-time and accurate plant disease diagnosis, establishing a pathway for early remediation, and supporting precision agriculture. The research establishes the opportunity for EfficientNet to be considered a promising solution for scalable smart farming.
Why it matches plant phenotyping methods葉画像から植物病害を分類する深層学習手法を開発・比較し、複数データセットで精度を検証しており、植物の病害状態の取得・推定が研究の中心である。
abstractdeep learning (DL) was used to develop an automatic disease identification system for the leaves of potato and mango plants
Reproduction assets foundThe paper uses two public Kaggle leaf-image datasets (PlantVillage potato, mango leaf disease) and states that all code, preprocessing scripts, dataset splits, and model artifacts are publicly available in a GitHub repository (also archived on Zenodo). All three are paper-specific, public, and actionable.Dataset · publicThe datasets analyzed during the current study are available in (https://www.kaggle.com/datasets/aarishasifkhan/plantvillage-potato-disease-dataset)Open asset ↗html-lines:473-503Code · publicAll code, preprocessing scripts, dataset splits, and model artifacts used in this study are publicly available in the GitHub repository at: [https://github.com/logeswarig/PROJECT_1].Open asset ↗logeswarig/PROJECT_1html-lines:473-503Code / dataset availability confirmedCrossref · checked 14 Sept 2026
Crop diseases pose a significant threat to global food security, causing substantial yield losses estimated at 10-40% annually. Traditional methods of disease identification, reliant on visual inspection by farmers or experts, are often subjective, time-consuming, and limited by the availability of specialists. This study proposes an ensemble learning framework for robust image-based crop disease detection, specifically designed to address the challenges of heterogeneous, non-Independent and Identically Distributed (non-IID) agricultural datasets in decentralized environments. Utilizing the Plant Village dataset, we implement a stacking ensemble model integrating diverse Convolutional Neural Networks (CNNs) such as VGG (Visual Geometry Group), ResNet, and Inception as base learners, with a meta-learner to optimize prediction fusion. The system employs comprehensive data preprocessing, including resizing, normalization, noise removal, segmentation, and augmentation, to enhance robustness against real-world variability. Transfer learning with ResNet50 was adopted as a baseline model. The baseline ResNet50 achieved 59% test accuracy across seven grape and potato disease classes. The ensemble model improved performance, attaining 63% accuracy with average precision, recall, and F1-scores of 56%, 52%, and 52% respectively. Class imbalance remained a limiting factor for certain categories. The ensemble learning approach outperformed individual models, demonstrating improved generalization across diverse datasets. Although computational demands and imbalance challenges persist, the system provides a promising AI-driven pipeline for accurate crop disease diagnosis, supporting sustainable agricultural practices.
Why it matches plant phenotyping methods植物画像から病害状態を推定するCNNアンサンブル手法の開発と性能評価が中心であり、植物病害フェノタイピング手法に該当する。
titleEnsemble Learning Framework for Image-Based Crop Disease Detection Using CNN Models
Reproduction assets foundThe paper's crop disease detection models were trained on the public PlantVillage dataset, which the authors explicitly state is available on Kaggle. This is the image input used directly for the paper's analysis. No author code, trained models, or other paper-specific assets are disclosed.Dataset · public-
Original Draft; Chinwe Gilean Onukwugha: Writing - Review & Editing, Visualization,
Project administration; Nneka Martina Oragba: Supervision, Project administration.
6.2. Institutional Review Board Statement
Not applicable.
6.3. Informed Consent Statement
Not applicable.
6.4. Data Availability Statement
Available on Kaggle: https://www.kaggle.com/datasets/sarahgmn/plant-village-dataset.Open asset ↗Kaggle · sarahgmn/plant-village-datasetpdf-raw-page:6 lines:1-88Code / dataset availability confirmedCrossref · checked 14 Sept 2026
The accurate classification of plant diseases is vital for global food security, as diseases can cause major yield losses and threaten sustainable and precision agriculture. The classification of plant diseases in low-light noisy environments is crucial because crops can be continuously monitored even at night. Important visual cues of disease symptoms can be lost due to the degraded quality of images captured under low-illumination, resulting in poor performance of conventional plant disease classifiers. However, researchers have proposed various techniques for classifying plant diseases in daylight, and no studies have been conducted for low-light noisy environments. Therefore, we propose a novel model for classifying plant diseases from low-light noisy images called dilated pixel attention network (DPA-Net). DPA-Net uses a pixel attention mechanism and multi-layer dilated convolution with a high receptive field, which obtains essential features while highlighting the most relevant information under this challenging condition, allowing more accurate classification results. Additionally, we performed fractal dimension estimation on diseased and healthy leaves to analyze the structural irregularities and complexities. For the performance evaluation, experiments were conducted on two public datasets: the PlantVillage and Potato Leaf Disease datasets. In both datasets, the image resolution is 256 × 256 pixels in joint photographic experts group (JPG) format. For the first dataset, DPA-Net achieved an average accuracy of 92.11% and harmonic mean of precision and recall (F1-score) of 89.11%. For the second dataset, it achieved an average accuracy of 88.92% and an F1-score of 88.60%. These results revealed that the proposed method outperforms state-of-the-art methods. On the first dataset, our method achieved an improvement of 2.27% in average accuracy and 2.86% in F1-score compared to the baseline. Similarly, on the second dataset, it attained an improvement of 6.32% in average accuracy and 6.37% in F1-score over the baseline. In addition, we confirm that our method is effective with the real low-illumination dataset self-constructed by capturing images at 0 lux using a smartphone at night. This approach provides farmers with an affordable practical tool for early disease detection, which can support crop protection worldwide.
Why it matches plant phenotyping methods低照度画像から植物病害状態を分類する新規画像解析モデルを開発し、複数データセットで性能評価しており、植物表現型取得・判定手法が中心である。
abstractwe propose a novel model for classifying plant diseases from low-light noisy images called dilated pixel attention network (DPA-Net).
Reproduction assets found保存済みの本文根拠を更新済みルールで再検証し、公開資産1件を確認しました。Code · publicWe have made the trained
DPA-Net with all the codes publicly available on the GitHub [25].Open asset ↗DPA-Netpdf-page:4 lines:1-47Code / dataset availability confirmedCrossref · Europe PMC · checked 8 Sept 2026
Common beanPotatoTomatoField / plotLeafObject detectionDisease symptoms / severity
In order to overcome the key challenges associated with detecting tomato leaf disease in complex agricultural environments, such as leaf occlusion, variation in lesion size and light interference, this study presents a lightweight detection model called ToMASD. This model integrates multi-scale feature decoupling and an adaptive alignment mechanism. The model innovatively comprises a dual-branch adaptive alignment module (TAAM) that achieves cross-scale lesion semantic alignment via a dynamic feature pyramid, a local context-aware gated unit (Faster-GLUDet) that uses a spatial attention mechanism to suppress background noise interference, and a multi-scale decoupling detection head (MDH) that balances the detection accuracy of small and diffuse lesions. On a dataset containing six types of disease under various weather conditions, ToMASD achieves an average precision of 84.3%,.by a margin of 4.7% to 12.1% over thirteen mainstream models. The computational load is compressed to 7.1 GFLOPs. Through the introduction of a transfer learning paradigm, the pre-trained weights of the tomato disease detection model can be transferred to common bean and potato detection tasks. Through domain adaptation layers and adversarial feature decoupling strategies, the domain shift problem is overcome, achieving an average precision of 92.7% on the target crop test set. False detection rates in foggy and strong light conditions are controlled at 6.3% and 9.8%, respectively. This study achieves dual breakthroughs in terms of both high-precision detection in complex scenarios and the cross-crop generalization ability of lightweight models. It provides a new paradigm for universal agricultural disease monitoring systems that can be deployed at the edge.
Why it matches plant phenotyping methodsトマト葉の病斑・病害状態を画像から検出するモデルを開発し、複数モデル比較、悪条件評価、他作物への汎化検証を行っており、植物病害フェノタイピング手法が中心である。
abstractthis study presents a lightweight detection model called ToMASD.
Reproduction assets foundThe paper's data availability statement points to a public potato disease dataset hosted on GitCode, which was used in the study's cross-crop transfer experiments (potato disease detection). The tomato dataset is from Roboflow (third-party platform, no direct URL given), and no author analysis code or trained model is,Dataset · publicPublicly available datasets were analyzed in this study. This data can be found here: https://gitcode.com/open-source-toolkit/829ec .Open asset ↗gitcode.com/open-source-toolkit/829eclines:649-666Code / dataset availability confirmedEurope PMC · checked 6 Sept 2026
Potato cyst nematodes pose a major threat to potato cultivation, with infestations often going undetected for years. Early and accurate detection is crucial for effective management, necessitating reliable, large-scale monitoring methods. Hyperspectral imaging shows great promise for non-invasive nematode detection, yet distinguishing between biotic (e.g., nematodes) and abiotic (e.g., drought) stressors remains a challenge. This study investigated the stress responses of potato plants to potato cyst nematodes Globodera rostochiensis and G. pallida , and water deficiency. We generated datasets to isolate and evaluate single and combined stressor effects on plant physiology and morphology. Various machine learning models and spectral processing techniques were applied to assess classification performance. Exploratory methods identified key spectral wavelengths, while statistical analyses evaluated the significance of physiological and morphological traits. Results showed that water deficiency was the dominant classification factor (F1 = 0.95). The distinction between infected and non-infected plants reached F1 = 0.70 in well-watered conditions and 0.80 in water-deficient plants. Distinguishing nematode species and inoculation levels yielded moderate accuracy (F1 = 0.65-0.80), improving to 0.80 when combining biotic and abiotic stress. However, classifying multiple stress categories simultaneously reduced performance (F1 = 0.58). These findings highlight the challenges of stressor separation and the potential of hyperspectral imaging for nematode detection. Further research is needed to refine classification models and validate findings under field conditions, facilitating the integration of hyperspectral imaging into precision agriculture.
Why it matches plant phenotyping methodsジャガイモの感染状態・生理／形態ストレスをハイパースペクトル画像と機械学習で推定する手法が研究の中心であり、植物病害状態の表現型推定に該当する。
abstractHyperspectral imaging shows great promise for non-invasive nematode detection
Reproduction assets foundThe authors explicitly state that processed hyperspectral data plus morphology and physiology measurements are publicly available on Zenodo, and their analysis code is on GitHub. Both are paper-specific, public, and actionable. The SiaPy library is a generic third-party tool and is excluded.Code · publicthe code repository at https://github.com/Manuscripts-code/Potato-plants-nemdetect--PP-2025 (accessed on October 5, 2025)Open asset ↗github · Manuscripts-code/Potato-plants-nemdetect--PP-2025lines:539-558Code / dataset availability confirmedEurope PMC · checked 6 Sept 2026
Accurately detecting and counting potatoes during early harvest is essential for estimating yield, automating sorting, and supporting data-driven agricultural decisions. However, field environments often present practical challenges-such as soil occlusion, overlapping tubers, and inconsistent lighting-that hinder robust visual recognition. In response, we introduce SCG-YOLOv8n, a compact and field-adapted detection framework built upon the YOLOv8n architecture and specifically tailored for small-object detection in real-world farming conditions. The model incorporates three practical enhancements: a C-SPD module that preserves spatial detail to improve recognition of partially buried tubers; an S-CARAFE operator that reconstructs fine-scale features during upsampling; and GhostShuffleConv layers that reduce computational overhead without sacrificing accuracy. Through extensive field-based experiments, SCG-YOLOv8n consistently outperforms YOLOv5n and its base version across all key metrics. Float16 quantization compresses the model to 3.2 MB, enabling real-time inference on Android devices. We also developed PotatoDetector, a mobile application that demonstrates stable performance in field trials, achieving an RMSE of 1.38 and [Formula: see text] of 0.96 in counting tasks. These results suggest that SCG-YOLOv8n offers a practical and scalable tool for precision agriculture, with potential applicability to other root and tuber crop monitoring scenarios.
Why it matches plant phenotyping methodsジャガイモ塊茎の画像検出・計数を行うモデルとモバイル実装を開発し、圃場で性能検証している。塊茎数という植物器官形質の取得が中心であり、単なる収量測定ではない。
abstractwe introduce SCG-YOLOv8n, a compact and field-adapted detection framework built upon the YOLOv8n architecture and specifically tailored for small-object detection in real-world farming conditions.
Reproduction assets foundThe paper's custom potato image dataset is not publicly available (available only from the corresponding author on request), but the authors provide a public GitHub repository for the SCG-YOLOv8n analysis code with an explicit availability statement and URL.Code · publicCode availability
Code can be found at https://github.com/AiXia520/SCG-YOLOv8n.git.Open asset ↗https://github.com/AiXia520/SCG-YOLOv8n.githtml-lines:359-392Code / dataset availability confirmedOpenAlex · Europe PMC · checked 14 Sept 2026
Accurate 3D phenotyping of agricultural produce remains challenging due to the trade-off between reconstruction quality and acquisition throughput in existing sensing technologies. While RGB-D cameras enable high-throughput scanning in operational settings like harvesting conveyors, they produce incomplete, low-quality 3D models. Conversely, close-range Structure-from-Motion (SfM) produces high-quality reconstructions but is not suitable for high-throughput field application. This study bridges this gap through 3DPotatoTwin , a paired dataset containing 339 tuber samples across three cultivars collected in Hokkaido, Japan. Our dataset uniquely combines: (1) conveyor-acquired RGB-D point clouds, (2) ground measurement, (3) SfM reconstructions under indoor controlled environment, and (4) aligned model pairs with transformation matrices. The multi-sensory alignment employs an semi-supervised pin-guided pipeline incorporating single-pin extraction and referencing, cross-strip matching, and binary-color-enhanced ICP, achieving 0.59 ± 0.11 mm registration accuracy. Beyond serving as a benchmark for 3D phenotyping algorithms, the dataset enables training of 3D completion networks to reconstruct high-quality 3D models from partial RGB-D point clouds. Meanwhile, the proposed semi-automated annotation pipeline has the potential to accelerate 3D dataset generation for similar studies. The presented methodology demonstrates broader applicability for multi-sensor data fusion across crop phenotyping applications. The dataset and pipeline source code are publicly available at HuggingFace and GitHub, respectively.
Why it matches plant phenotyping methodsジャガイモ塊茎の3D表現型計測を対象に、RGB-D・SfM・地上計測を統合したデータセット、位置合わせパイプライン、ベンチマークを開発しており、表現型取得手法が中心である。
abstractAccurate 3D phenotyping of agricultural produce remains challenging due to the trade-off between reconstruction quality and acquisition throughput in existing sensing technologies.
Reproduction assets found保存済みの本文根拠を更新済みルールで再検証し、公開資産1件を確認しました。Code · publicAll the batch processing scripts mentioned in this section were provided in the 3dscan folder at Github (https://github.com/UTokyo-FieldPhenomics-Lab/PotatoScan/).Open asset ↗UTokyo-FieldPhenomics-Lab/PotatoScanhtml-lines:119-131Code / dataset availability confirmedEurope PMC · checked 6 Sept 2026
Abstract Potato (Solanum tuberosum), the fourth most abundant food crop in the world, is subjected to significant challenges due to diseases such as late blight, causing global annual yield loss exceeding $6.7 billion [1]. Current methods of detection are time-consuming and frequently fail to identify early-stage infections. Deep learning, and particularly the Convolutional Neural Networks (CNNs) provide fast and scalable automation of disease classification compared to traditional methods. In this work, potato leaf diseases were classified by many CNNs such as XceptionNet, DenseNet121, a 5-layer CNN, a 6-layer CNN, and a custom hybrid CNN model (SpudNet5–R3). The datasets we used are as follows: (1) PlantVillage dataset was used and (2) PLD dataset which contains healthy, early blight, and late blight potato leaves. A full preprocessing pipeline was carried out which includes resizing, colour normalization, and Contrast Limited Adaptive Histogram Equalization (CLAHE). Targeted data augmentation strategies were applied to tackle the class imbalance. The models were trained, validated, and tested individually on three datasets and the input images were resized to 224×224. We analysed performance measures such as accuracy, precision, recall, F1-score, and inference time for finding the best model. In addition, Grad-CAM visualization was used to provide interpretable insights into the model predictions, showing the particular leaf regions that contributed to the classification. Experimental results show the strong competitiveness of our custom SpudNet5-R3 architecture, obtaining testing accuracy of 99.07% and macro F1-score of 99% on the PlantVillage (D1) potato dataset. It achieved also the testing accuracy of 95.56% and a macro f1-score of 96% on PLD (D2) dataset, demonstrating the successfulness of CNN architectures customized for robust and accurate recognition of the potato diseases.
Why it matches plant phenotyping methodsジャガイモ葉の画像から病害状態を分類するCNNモデルを開発・比較し、複数データセットで性能検証しているため、植物病害表現型の取得・推定が中心である。
abstractIn this work, potato leaf diseases were classified by many CNNs such as XceptionNet, DenseNet121, a 5-layer CNN, a 6-layer CNN, and a custom hybrid CNN model (SpudNet5–R3).
Reproduction assets foundThe paper's phenotyping inputs are two public Kaggle leaf-image datasets (PlantVillage potato subset D1 and PLD D2), explicitly named in the Data Availability Statement with URLs. No author code, trained models, or checkpoints are deposited.Dataset · publicThe used datasets are online available on Kaggle repository,
https://www.kaggle.com/datasets/abdallahalidev/plantvillage-dataset (Dataset D1)Open asset ↗Kaggle · plantvillage-datasetpdf-page:23 lines:1-36Code / dataset availability confirmedEurope PMC · checked 6 Sept 2026
Multispectral leaf canopy reflectance as measured by unmanned aerial vehicles is the result of genetic and environmental interactions driving plant physiochemical processes. These measures can then be used to construct relationship matrices for modeling genetic main effects. This type of phenotypic prediction is particularly relevant for trials with many entries, such as those used in early generation potato (Solanum tuberosum) breeding. We compared three methods for making predictions in our potato breeding program: first, using multispectral-derived relationship matrices; second, using the traditional approach based on genomic derived relationships; and third, using a combination of both. Multispectral bands were collected at five different time points for two market classes of potato: chipping and fresh market. We modeled genetic main effects for yield and quality traits at each time point and all stages combined. Models with multispectral relationship matrices exhibited better prediction accuracy for yield and roundness than genomic only models and models featuring spectra plus genomic kernels outperformed both single-kernel predictions in terms of accuracy for most traits. Time points were variably informative depending on the trait measured, however, for all traits combining across time points performed as well or better than single time point models. Similarly, using feature selection to limit our models to important variables did not improve prediction accuracy significantly. This work highlights two potential uses for spectral data in genomic prediction: first, as an alternative to genetic data and second, in combination with genetic data to increase precision of selection.
Why it matches plant phenotyping methodsUAVマルチスペクトルセンシングを用いたキャノピー反射データをゲノム予測に組み込み、複数手法と予測精度を比較しており、植物表現型取得・推定ワークフローが研究の中心です。
abstractMultispectral leaf canopy reflectance as measured by unmanned aerial vehicles is the result of genetic and environmental interactions driving plant physiochemical processes.
Reproduction assets foundThe paper's data availability statement points to a public GitHub repository containing all data and scripts used for the multispectral genomic prediction analysis.Code · publicAll data and scripts used for this work are available at: https://github.com/shannonlabumn/GS_multispectra_analysis.git .Open asset ↗shannonlabumn/GS_multispectra_analysislines:375-518Code / dataset availability confirmedEurope PMC · checked 6 Sept 2026
Potato blight is a serious disease that affects potato crops and leads to substantial agricultural and economic losses. To enhance detection accuracy, we propose Bayesian Optimized CNN Weighted Ensemble Potato Blight Detection, a deep learning-based approach that optimizes CNN models through Bayesian optimization and ensemble learning. In the proposed study, extensive experiments were conducted to develop an optimized Bayesian Weighted Ensemble CNN model for the detection of potato leaf blight. First, multiple CNN architectures were trained using different optimizers: ADAM (DL1), SGD (DL2), RMSProp (DL3), and ADAMAX (DL4), evaluating their individual performance. To mitigate class imbalance, data augmentation techniques were applied, increasing the number of healthy leaves by 6 times. In addition, fuzzy image enhancement was implemented to improve feature extraction and classification accuracy. Bayesian optimization was then used to determine the optimal weights for a deep ensemble model, exploring 11 possible model combinations. The final EDL7 ensemble model (DL1 + DL2 + DL3), optimized through Bayesian optimization, achieved the highest accuracy of 97.94%, outperforming individual models. Furthermore, the ensemble model achieved a precision of 0.981, recall of 0.983, and an F1 score of 0.982, ensuring a well-balanced trade-off between precision and recall. These results highlight the effectiveness of Bayesian-optimized ensemble learning in improving potato blight detection, making it a robust and reliable solution for agricultural disease classification.
Why it matches plant phenotyping methodsジャガイモ葉の病徴を画像から分類するCNN・画像強調・ベイズ最適化アンサンブルを中心に開発・評価しており、植物病害状態の取得手法が主題である。
abstractwe propose Bayesian Optimized CNN Weighted Ensemble Potato Blight Detection, a deep learning-based approach that optimizes CNN models through Bayesian optimization and ensemble learning.
Reproduction assets foundThe paper's potato leaf blight detection models were trained on a public Kaggle dataset, explicitly declared in the Data availability statement. No author analysis code or trained model checkpoints are reported as publicly available.Dataset · publicThe datasets generated and analyzed during the current study are available in the Kaggle repository https://www.kaggle.com/datasets/muhammadardiputra/potato-leaf-disease-datasetOpen asset ↗Kaggle · muhammadardiputra/potato-leaf-disease-datasetlines:308-345Code / dataset availability confirmedEurope PMC · checked 15 Sept 2026
The Transition to a Data-Driven Agriculture (TTADDA) project focuses on advancing the shift toward high-tech, circular agriculture. By developing cutting-edge sensor technologies and AI-driven tools, the project aims to boost productivity through a data-centric potato production system that supports circular agricultural practices. Potato phenotyping is crucial for creating high-yielding, resilient, and sustainable potato crops, which are essential in global food systems. Specifically in the Netherlands, the global leader in seed potato production and Japan that produces certified seed potatoes under strict quality controls and phytosanitary regulations. A multi-season drone dataset from five potato trials-three in Japan and two in the Netherlands was collected. Each trial field was divided into small plots, each planted with a specific cultivar to assess varietal performance. Data included drone imagery (RGB and multispectral), manual yield and ground coverage measurements, and weather data. The combination of sensor versatility, diverse potato varieties, and varying climate and soil conditions between Japan and the Netherlands makes this dataset highly valuable and potentially reusable for a wide range of applications. Using MIAPPE for this dataset ensures consistent, clear documentation of sensors, varieties, and conditions, making the data findable, reusable, and easy to integrate with other studies. It also supports reproducibility and automated analysis across the multi-location trials.
Why it matches plant phenotyping methodsジャガイモの表現型解析を目的としたUAV RGB・マルチスペクトル画像と圃場測定を含む、多季節・多地点の再利用可能なデータセットの構築・標準化が中心である。
abstractA multi-season drone dataset from five potato trials-three in Japan and two in the Netherlands was collected.
Reproduction assets foundThe paper is a data descriptor for the TTADDA-UAV potato phenotyping dataset (RGB/multispectral orthomosaics, DSMs, yield, ground coverage, weather) publicly deposited on 4TU.ResearchData with a DOI, plus an authors' GitHub repository for loading the MIAPPE-formatted data.Dataset · publicThe dataset is part of the following collection:
Data identification number: doi.org.10.4121/936b5772–09fc–4856–983d-1f9cc2f38d15
Direct URL to data: ( https://doi.org/10.4121/936b5772-09fc-4856-983d-1f9cc2f38d15 )
The collection consist of metadata, and five related studies: TTADDA_NARO_2021, TTADDA_NARO_2022, TTADDA_NARO_2023, TTADDA_WUR_2022, TTADDA_WUR_2023
To visualise the metadata and download the dataset we recommend the following GIT:
https://github.com/NPEC-NL/MIAPPE_TTADDA_dataset
Related research article
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Value of the DOpen asset ↗10.4121/936b5772-09fc-4856-983d-1f9cc2f38d15lines:57-83Code / dataset availability confirmedCrossref · Europe PMC · checked 6 Sept 2026
Introduction Technology is becoming essential in agriculture, especially with the growth of smart devices and edge computing. These tools help boost productivity by automating tasks and allowing real-time analysis on devices with limited memory and resources. However, many current models struggle with accuracy, size, and speed particularly when handling multi-label classification problems. Methods This paper proposes a Convolutional Neural Network with Squeeze and Excitation Enabled Identity Blocks (CNN-SEEIB), a hybrid CNN-based deep learning architecture for multi-label classification of plant diseases. CNN-SEEIB incorporates an attention mechanism in its identity blocks to leverage the visual attention that enhances the classification performance and computational efficiency. PlantVillage dataset containing 38 classes of diseased crop leaves alongside healthy leaves, totaling 54,305 images, is utilized for experimentation. Results CNN-SEEIB achieved a classification accuracy of 99.79%, precision of 0.9970, recall of 0.9972, and an F1 score of 0.9971. In addition, the model attained an inference time of 64 milliseconds per image, making it suitable for real-time deployment. The performance of CNNSEEIB is benchmarked against the state-of-the-art deep learning architectures, and resource utilization metrics such as CPU/GPU usage and power consumption are also reported, highlighting the model’s efficiency. Discussion The proposed architecture is also validated on a potato leaf disease dataset of 4,062 images from Central Punjab, Pakistan, achieving a 97.77% accuracy in classifying Healthy, Early Blight, and Late Blight classes.
Why it matches plant phenotyping methods植物病害画像から病害状態を分類するCNN手法の開発と、複数データセットでの性能比較・検証が中心であり、植物フェノタイピング手法に該当する。
abstractThis paper proposes a Convolutional Neural Network with Squeeze and Excitation Enabled Identity Blocks (CNN-SEEIB), a hybrid CNN-based deep learning architecture for multi-label classification of plant diseases.
Reproduction assets foundThe paper's experiments use the public PlantVillage dataset (54,305 images, 38 classes), explicitly linked in the Data availability statement. No author code or model checkpoints are shared.Dataset · publicPublicly available datasets were analyzed in this study. This data can be found here: https://www.kaggle.com/datasets/mohitsingh1804/plantvillage .Open asset ↗Kaggle · mohitsingh1804/plantvillagelines:868-933Code / dataset availability confirmedEurope PMC · checked 15 Sept 2026
Agriculture plays a critical role in the global economy, providing livelihoods and ensuring food security for billions. Progress in agricultural techniques has helped boost crop yield, along with a growing need for precise disease monitoring solutions. This requires accurate, efficient, and timely disease detection methods. The research presented in this paper addresses this need by analyzing a hybrid model built using Graph Attention Network (GAT) and Graph Convolution Network (GCN) models. The integration of these models has witnessed a notable improvement in the accuracy of leaf disease classification. GCN has been widely used for learning from graph-structured data, and GAT enhances this by incorporating attention mechanisms to focus on the most important neighbors. The methodology incorporates superpixel segmentation for efficient feature extraction, partitioning images into meaningful, homogeneous regions that better capture localized features. The robustness of the model is further enhanced by the edge augmentation technique. The edge augmentation technique in the context of graph has introduced a significant degree of generalization in the detection capabilities of the model as analyzed on apple, potato, and sugarcane leaves. To further optimize training, weight initialization techniques are applied. The hybrid model is evaluated against the individual performance of the GCN and GAT models and the hybrid model achieved a precision of 0.9822, recall of 0.9818, and F1-score of 0.9818 in apple leaf disease classification, a precision of 0.9746, recall of 0.9744, and F1-score of 0.9743 in potato leaf disease classification, and a precision of 0.8801, recall of 0.8801, and F1-score of 0.8799 in sugarcane leaf disease classification. The results indicate that the model is effective and consistent in identifying leaf diseases in plants.
Why it matches plant phenotyping methods植物葉画像から病害状態を分類するGAT-GCNモデルを開発・比較評価しており、病害表現型の抽出手法が中心である。
abstractThe methodology incorporates superpixel segmentation for efficient feature extraction, partitioning images into meaningful, homogeneous regions that better capture localized features.
Reproduction assets foundThe paper evaluates its GAT-GCN hybrid leaf disease classifier on three public leaf image datasets. Two of them (apple and potato) are cited with explicit Kaggle URLs that match allowed_urls entries; the sugarcane dataset is cited without a public URL. No author code or model release is mentioned.Dataset · publicAdvanced Comput. Sci. Appl.
10 ( 8 ), 486 – 492 . doi:
10.14569/IJACSA.2019.0100863
Alsayed A. Alsabei A. Muhammad A.
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Bansal P. Kumar R. Kumar S.
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Bera A. Bhattacharjee D. Krejcar O.
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RathOpen asset ↗Kaggle · muhammadardiputra/potato-leaf-disease-datasetlines:709-821Code / dataset availability confirmedEurope PMC · checked 6 Sept 2026
The vigor of potato plants is of crucial importance for potato seed producers, who are interested in predicting it at scale by exploiting the dependence of plant growth and development on the origin and physiological state of the seed tuber. In this article we present the results of a three-year long experiment in which we studied six potato varieties in three test fields. We identify a 73-[Formula: see text] overall correlation in the vigor of plants from the same seedlot grown in different test fields. Similarly, the biochemical tuber data produce plant vigor predictions that correlate up to 70-[Formula: see text] with the measurements. However, these relatively large data and prediction correlations are mostly due to the strong dependence of the seedlot vigor on the tuber genotype. For five out of six studied varieties, variety-specific cross-field and cross-year vigor predictions produce negligible or even negative correlations when the seed tubers and young plants experience environmental stress. At the same time, for the variety that appeared to be less sensitive to environmental stresses, we obtained cross-field and cross-year vigor predictions correlating up to [Formula: see text] with the measurements. Analysis of individual predictor variables, such as the abundance of a particular metabolite, indicates that the vigor-enhancing properties of the seed tubers are also variety-specific and that the FTIR spectroscopy data is the most reliable predictor.
Why it matches plant phenotyping methodsFTIR・生化学データからジャガイモ植物の vigor を予測し、圃場間・年次間で予測性能を検証しており、植物形質の取得・推定法が中心です。
abstractinterested in predicting it at scale
Reproduction assets foundThe paper's Data Availability statement points to a public 4TU.ResearchData deposit containing the seed tuber and plant canopy (drone-derived vigor) datasets plus the Python code needed to reproduce the regression results — a paper-specific, publicly actionable asset.Dataset · publicBoth the seed tuber and plant canopy datasets are available at http://doi.org/10.4121/3a97fa0c-8c7d-451a-b8fe-d521f1cec55e . The data also includes the Python code necessary to reproduce the results of regression.Open asset ↗10.4121/3a97fa0c-8c7d-451a-b8fe-d521f1cec55elines:267-336Code / dataset availability confirmedEurope PMC · checked 14 Sept 2026
Potatoes are one of the world's most widely cultivated crops, but their yield is coming under mounting pressure from early blight, a fungal disease caused by Alternaria solani . Early detection and accurate identification are key to effective disease management and yield protection. This paper introduces a novel deep learning framework called ZeroShot CNN, which integrates convolutional neural networks (CNNs) and ZeroShot Learning (ZSL) for the efficient classification of seen and unseen disease classes. The model utilizes convolutional layers for feature extraction and employs semantic embedding techniques to identify previously untrained classes. Implemented on the Kaggle potato disease dataset, ZeroShot CNN achieved 98.50% accuracy for seen categories and 99.91% accuracy for unseen categories, outperforming conventional methods. The hybrid approach demonstrated superior generalization, providing a scalable, real-time solution for detecting agricultural diseases. The success of this solution validates the potential in harnessing deep learning and ZeroShot inference to transform plant pathology and crop protection practices.
Why it matches plant phenotyping methodsジャガイモ葉の病害状態を画像から分類する深層学習手法が論文の中心であり、未学習病害クラスへの汎化性能も評価しているため、植物フェノタイピング手法として採用する。
abstractThis paper introduces a novel deep learning framework called ZeroShot CNN, which integrates convolutional neural networks (CNNs) and ZeroShot Learning (ZSL) for the efficient classification of seen and unseen disease classes.
Reproduction assets foundThe paper's primary phenotyping input is the Kaggle Potato Disease Dataset (2151 labeled potato leaf images: 1000 healthy, 1151 early blight), explicitly declared publicly available in the Data Availability Statement with an authors' URL matching an allowed URL. No author analysis code or trained model checkpoints are.Dataset · publicupervision, M.S.F.; project administration, M.F.W.; funding acquisition, N.J.H. All authors have read and agreed to the published version of the manuscript.
Institutional Review Board Statement
Not applicable.
Informed Consent Statement
Not applicable.
Data Availability Statement
The dataset is available on the Kaggle database. https://www.kaggle.com/code/amankrpandey1/potato-disease-classification/input (accessed on 1 June 2025).
Conflicts of Interest
Author Muhammad Farooq Wasiq was employed by the company METICS Solutions Ltd. The remaining authors declare that the research was conducted in the absence of any commercial or financial relationships that could be construed as a potential conOpen asset ↗Kaggle · amankrpandey1/potato-disease-classificationlines:402-431Code / dataset availability confirmedEurope PMC · checked 14 Sept 2026
Humans need food to sustain their lives. Therefore, agriculture is one of the most important issues in nations. Agriculture also plays a major role in the economic development of countries by increasing economic income. Early diagnosis of plant diseases is crucial for agricultural productivity and continuity. Early disease detection directly impacts the quality and quantity of crops. For this reason, many studies have been carried out on plant leaf disease classification. In this study, a simple and effective leaf disease classification method was developed. Disease classification was performed using seven state-of-the-art pretrained convolutional neural network architectures: VGG16, ResNet50, SqueezeNet, Xception, ShuffleNet, DenseNet121 and MobileNetV2. A simplified SqueezeNet model, GAPNet, was subsequently proposed for grape, apple and potato leaf disease classification. GAPNet was designed to be a lightweight and fast model with 337.872 parameters. To address the data imbalance between classes, oversampling was carried out using the synthetic minority oversampling technique. The proposed model achieves accuracy rates of 99.72%, 99.53%, and 99.83% for grape, apple and potato leaf disease classification, respectively. A success rate of 99.64% was achieved in multiplant leaf disease classification when the grape, apple and potato datasets were combined. Compared with the state-of-the-art methods, the lightweight GAPNet model produces promising results for various plant species.
Why it matches plant phenotyping methods植物葉の病害状態を画像から分類する軽量CNN手法を開発・評価しており、病害表現型の抽出が研究の中心です。
abstractIn this study, a simple and effective leaf disease classification method was developed.
Reproduction assets foundAuthors publicly release GAPNet implementation code via GitHub and Zenodo, and the paper's leaf image datasets (PlantVillage, New Plant Disease, Plant Pathology 2020) are publicly available at listed URLs.Code · publiccle, and approved the final draft.
Asuman Günay Yılmaz conceived and designed the experiments, analyzed the data, authored or reviewed drafts of the article, and approved the final draft.
Data Availability
The following information was supplied regarding data availability:
The data and code are available at GitHub and Zenodo:
- https://github.com/ozgenurr/GAPNet.git .Open asset ↗ozgenurr/GAPNetlines:727-762Dataset · public- Ozge Ozaras. (2025). ozgenurr/GAPNet: GAPNET (GAPNET). Zenodo. https://doi.org/10.5281/zenodo.15163686 .
The datasets are publicly available at:
- Plant Village Dataset: https://github.com/spMohanty/PlantVillage-Dataset/tree/master/raw/color .
- New Plant disease Dataset: https://www.kaggle.com/datasets/vipoooool/new-plant-diseases-dataset/data .
- Plant Pathology: https://www.kaggle.com/competitions/plant-pathology-2020-fgvc7/data .
References
Babalola, Kpai & Toygar (2023) Babalola FO, Kpai NI, Toygar Ö. Deep learning-based classification of apple leaf diseases uOpen asset ↗PlantVillage-Datasetlines:763-789Dataset · public- Ozge Ozaras. (2025). ozgenurr/GAPNet: GAPNET (GAPNET). Zenodo. https://doi.org/10.5281/zenodo.15163686 .
The datasets are publicly available at:
- Plant Village Dataset: https://github.com/spMohanty/PlantVillage-Dataset/tree/master/raw/color .
- New Plant disease Dataset: https://www.kaggle.com/datasets/vipoooool/new-plant-diseases-dataset/data .
- Plant Pathology: https://www.kaggle.com/competitions/plant-pathology-2020-fgvc7/data .
References
Babalola, Kpai & Toygar (2023) Babalola FO, Kpai NI, Toygar Ö. Deep learning-based classification of apple leaf diseases using AlexNet. Computer Science, IDAP-2023: International Artificial Intelligence and Data Processing SympOpen asset ↗lines:763-789Dataset · publicGAPNET (GAPNET). Zenodo. https://doi.org/10.5281/zenodo.15163686 .
The datasets are publicly available at:
- Plant Village Dataset: https://github.com/spMohanty/PlantVillage-Dataset/tree/master/raw/color .
- New Plant disease Dataset: https://www.kaggle.com/datasets/vipoooool/new-plant-diseases-dataset/data .
- Plant Pathology: https://www.kaggle.com/competitions/plant-pathology-2020-fgvc7/data .
References
Babalola, Kpai & Toygar (2023) Babalola FO, Kpai NI, Toygar Ö. Deep learning-based classification of apple leaf diseases using AlexNet. Computer Science, IDAP-2023: International Artificial Intelligence and Data Processing Symposium (IDAP-2023) 2023:67–74. doi: 10.53070/bbd.1349566.
BanjaOpen asset ↗lines:763-789Code / dataset availability confirmedEurope PMC · checked 6 Sept 2026
Agriculture, a crucial sector for global economic development and sustainable food production, faces significant challenges in detecting and managing crop diseases. These diseases can greatly impact yield and productivity, making early and accurate detection vital, especially in staple crops like potatoes. Traditional manual methods, as well as some existing machine learning and deep learning techniques, often lack accuracy and generalizability due to factors such as variability in real-world conditions. This study proposes a novel approach to improve potato plant disease detection and identification using a hybrid deep-learning model, EfficientNetV2B3+ViT. This model combines the strengths of a Convolutional Neural Network - EfficientNetV2B3 and a Vision Transformer (ViT). It has been trained on a diverse potato leaf image dataset, the "Potato Leaf Disease Dataset", which reflects real-world agricultural conditions. The proposed model achieved an accuracy of 85.06 % , representing an 11.43 % improvement over the results of the previous study. These results highlight the effectiveness of the hybrid model in complex agricultural settings and its potential to improve potato plant disease detection and identification.
Why it matches plant phenotyping methodsジャガイモ葉画像から病害状態を推定する深層学習モデルを開発・評価しており、植物病害表現型の取得・分類が研究の中心です。
abstractThis study proposes a novel approach to improve potato plant disease detection and identification using a hybrid deep-learning model, EfficientNetV2B3+ViT.
Reproduction assets foundThe paper explicitly states code availability with a public GitHub repository URL (which is in the allowed list) for the EfficientNetV2B3+ViT potato disease detection model. The two image datasets (Plant Village, Potato Leaf Disease Dataset) are noted as publicly available but no paper-specific URLs are provided in theCode · publicCode availability
The code is available at https://github.com/HJacksons/potato-efficientViTOpen asset ↗HJacksons/potato-efficientViTlines:152-185Code / dataset availability confirmedCrossref · checked 14 Sept 2026
Accurate classification of plant disease by farming robot cameras can increase crop yield and reduce unnecessary agricultural chemicals, which is a fundamental task in the field of sustainable and precision agriculture. However, until now, disease classification has mostly been performed by manual methods, such as visual inspection, which are labor-intensive and often lead to misclassification of disease types. Therefore, previous studies have proposed disease classification methods based on machine learning or deep learning techniques; however, most did not consider real-world plant images with complex backgrounds and incurred high computational costs. To address these issues, this study proposes a computationally effective residual convolutional attention network (RCA-Net) for the disease classification of plants in field images with complex backgrounds. RCA-Net leverages attention mechanisms and multiscale feature extraction strategies to enhance salient features while reducing background noises. In addition, we introduce fractal dimension estimation to analyze the complexity and irregularity of class activation maps for both healthy plants and their diseases, confirming that our model can extract important features for the correct classification of plant disease. The experiments utilized two publicly available datasets: the sugarcane leaf disease and potato leaf disease datasets. Furthermore, to improve the capability of our proposed system, we performed fractal dimension estimation to evaluate the structural complexity of healthy and diseased leaf patterns. The experimental results show that RCA-Net outperforms state-of-the-art methods with an accuracy of 93.81% on the first dataset and 78.14% on the second dataset. Furthermore, we confirm that our method can be operated on an embedded system for farming robots or mobile devices at fast processing speed (78.7 frames per second).
Why it matches plant phenotyping methods植物画像から病害状態を推定する画像解析手法を開発・評価しており、病害分類とモデル性能検証が研究の中心であるため。
abstractthis study proposes a computationally effective residual convolutional attention network (RCA-Net) for the disease classification of plants in field images with complex backgrounds.
Reproduction assets foundThe authors explicitly state their RCA-Net model and code are publicly available on GitHub, which constitutes the paper's computational analysis asset. The sugarcane and potato leaf disease datasets are cited third-party prior datasets, not paper-specific deposits.Code · publicData Availability Statement: Our model and code are made publicly available on GitHub site
(https://github.com/mhamza92/RCA-Net, accessed on 15 April 2025).Open asset ↗https://github.com/mhamza92/RCA-Netpdf-page:33 lines:1-57Code / dataset availability confirmedEurope PMC · Crossref · checked 14 Sept 2026
Abstract The identification of plant diseases has become increasingly challenging due to the interference of complex backgrounds in images, which often hinders the accuracy of classification models. Recent studies have employed various Deep Learning (DL) techniques to overcome this issue, utilizing both publicly available and custom datasets. However, achieving high accuracy while managing background complexity remains a significant hurdle. This paper aims to address this challenge by introducing a two-step DL approach for plant disease classification. The approach begins with an enhanced Convolutional Neural Network (CNN), developed through a comparative analysis of several CNN architectures, including customized and cascaded versions of prominent DL models, achieving an accuracy of 93.3%. To further enhance accuracy, segmentation techniques such as DeepLabV3+, UNet, Iterative UNet, and UNet with Atrous Spatial Pyramid Pooling (ASPP) are integrated before applying customized CNN architectures. These segmentation methods effectively isolate diseased portions of leaf images, improving classification performance. The proposed methodology introduces model pruning to optimize performance and computational efficiency by removing redundant parameters and less significant features. The UNet with ASPP architecture, in combination with pruning strategies, significantly reduces time complexity and feature redundancy, leading to an impressive accuracy of 99.8%. This approach outperforms other existing models in terms of accuracy and efficiency. The model is trained on the Plant Village dataset, which includes 10 different diseases across plant species such as tomato, corn, and potato, offering a comprehensive solution for plant disease identification.
Why it matches plant phenotyping methods植物病葉画像から病変部を分離し、分類する深層学習手法の開発が中心であり、植物の病害状態を直接推定するため、方法論文として採用。
abstractThis paper aims to address this challenge by introducing a two-step DL approach for plant disease classification.
Reproduction assets found保存済みの本文根拠を更新済みルールで再検証し、公開資産1件を確認しました。Dataset · publicThe manuscript data set can be freely downloaded from
https://www.tensorflow.org/datasets/catalog/plant_villageOpen asset ↗plant_villagepdf-page:33 lines:1-34Code / dataset availability confirmedEurope PMC · checked 14 Sept 2026
This dataset comprises of 58,709 annotated images of irish potato leaves, categorized into three classes (healthy, early blight and late blight). The data was collected over six months from smallholder farms in Southern Highlands Tanzania, using Samsung Galaxy A03 smartphones with 8-megapixel camera. Researchers, farmers and agricultural extension officers were trained to capture images under diverse conditions, including varying lighting, angles and backgrounds to ensure the dataset is diverse and representative. Plant pathologists were used to validate the images to ensure and enhance the reliability of the labels. Pre-processing steps such as duplicate removal, filtering of irrelevant images, annotation and metadata integration were applied resulting in a high-quality dataset. The dataset is organized into three folders (healthy, early blight and late blight) and is freely available on the Zenodo repository to promote accessibility for researchers working in the field of plant diseases. This dataset holds significant potential for reuse in training machine learning models for crop disease detection, transfer learning and data augmentation studies. By enabling early detection and classification of potato diseases, the dataset supports the development of innovative agricultural tools aimed at reducing crop losses and enhancing food security in Sub-Saharan Africa. Its robust design and regional specificity make it a valuable resource for advancing research and innovation in sustainable farming practices.
Why it matches plant phenotyping methodsジャガイモ葉の画像から健全・初期疫病・後期疫病という植物病害状態を判定する、注釈付き大規模データセットであり、再利用可能なフェノタイピング資源として中心的です。
abstractThis dataset comprises of 58,709 annotated images of irish potato leaves, categorized into three classes (healthy, early blight and late blight).
Reproduction assets foundThe paper is a data descriptor for the authors' own Irish potato leaf imagery dataset (58,709 annotated images for healthy/early blight/late blight classification), publicly deposited on Zenodo with an explicit DOI and direct URL matching an allowed URL. This is a paper-specific public plant image/phenotyping asset.Dataset · publiccollected from farms located in Southern Highlands of Tanzania, specifically in Mbeya (8.9090° S, 33.4589° E), Iringa (7.7673° S, 35.6900° E), Njombe (9.3333° S, 34.7667° E) and Songwe (9.1333° S, 32.9333° E) regions.
Data accessibility
Repository name: ZENODOData identification number: 10.5281/zenodo.8286529Direct URL to data: https://zenodo.org/records/8286529
1.
Value of the Data
•
This dataset serves as a valuable resource as it addresses critical data gaps in the field of Artificial Intelligence in Agriculture by providing region-specific dataset with over 58,000 annotated images captured under diverse environment in the real-world smallholder farming conditions.
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This dataset caOpen asset ↗Zenodo · 10.5281/zenodo.8286529html-lines:1-30Code / dataset availability confirmedCrossref · checked 14 Sept 2026
A sizable section of India's rural population depends on agriculture for their livelihoods, while manual labor and disease control continue to be problems. The objective of this study is to enhance the Mask R-CNN architecture for precise detection and segmentation of potato plant leaf illnesses. This is of utmost importance in agriculture since diseases like as early blight and late blight profoundly affect crop productivity. Traditional illness detection techniques are characterized by their high labor requirements and susceptibility to human mistakes, thereby requiring the use of automated alternatives. By refining the feature extraction method, optimizing the Region Proposal Network (RPN), and enhancing segmentation via data augmentation and parameter tweaking, the suggested technique improves Mask R-CNN. Empirical findings indicate that the optimized Mask R-CNN outperforms other models, including YOLOv8 and EfficientNet, with an accuracy of 99.86%, precision of 99.82%, recall of 99.83%, and an F1-score of 99.84%. In conclusion, of work establishes that the optimized Mask R-CNN is a reliable instrument for early and accurate disease identification, thereby enhancing crop management and agricultural output.
Why it matches plant phenotyping methodsジャガイモ葉の病徴を画像から検出・セグメンテーションするMask R-CNNの改良と比較評価が研究の中心であり、植物病害状態の画像ベース表現型計測に該当する。
abstractThe objective of this study is to enhance the Mask R-CNN architecture for precise detection and segmentation of potato plant leaf illnesses.
The accurate classification of potato leaf diseases plays a pivotal role in ensuring the health and productivity of crops. This study presents a unified approach for addressing this challenge by leveraging the power of Explainable AI (XAI) and transfer learning within a deep Learning framework. In this research, we propose a transfer learning-based deep learning model that is tailored for potato leaf disease classification. Transfer learning enables the model to benefit from pre-trained neural network architectures and weights, enhancing its ability to learn meaningful representations from limited labeled data. Additionally, Explainable AI techniques are integrated into the model to provide interpretable insights into its decision-making process, contributing to its transparency and usability. We used a publicly available potato leaf disease dataset to train the model. The results obtained are 97% for validation accuracy and 98% for testing accuracy. This study applies gradient-weighted class activation mapping (Grad-CAM) to enhance model interpretability. This interpretability is vital for improving predictive performance, fostering trust, and ensuring seamless integration into agricultural practices.
Why it matches plant phenotyping methodsジャガイモ葉の病害状態を画像から分類する深層学習・Grad-CAM手法が研究の中心であり、植物病害フェノタイピングに該当する。
abstractThis study presents a unified approach for addressing this challenge by leveraging the power of Explainable AI (XAI) and transfer learning within a deep Learning framework.
Reproduction assets foundThe paper's potato leaf disease classification uses the publicly available PlantVillage dataset from Kaggle, cited with an explicit URL in the references. No author analysis code or trained model is deposited.Dataset · publicily represent those of their affiliated organizations, or those of the publisher, the editors and the reviewers. Any product that may be evaluated in this article, or claim that may be made by its manufacturer, is not guaranteed or endorsed by the publisher.
References
Al-Dabbagh A.
( 2022 ). PlantVillage Dataset. Available at: https://www.kaggle.com/datasets/abdallahalidev/plantvillage-dataset (Accessed August 20, 2022).
Al-Sadi A. M.
( 2017 ).
Impact of plant diseases on human health
. Int. J. Nutr. Pharmacol. Neurol. Dis.
7 , 21 – 22 . doi:
10.4103/ijnpnd.ijnpnd_24_17
Anim-Ayeko A. O. Schillaci C. Lipani A.
( 2023 ).
Automatic blight disease detection in potato ( Solanum tuberosum L.) andOpen asset ↗Kaggle · plantvillage-datasetlines:245-327Code / dataset availability confirmedEurope PMC · Crossref · checked 6 Sept 2026
As climate changes, maintenance of yield stability requires efficient selection for drought tolerance. Drought-tolerant cultivars have been successfully but slowly bred by yield-based selection in arid environments. Marker-assisted selection accelerates breeding but is less effective for polygenic traits. Therefore, we investigated a selection based on phenotypic markers derived from automatic phenotyping systems. Our trial comprised 64 potato genotypes previously characterised for drought tolerance in ten trials representing Central European drought stress scenarios. In two trials, an automobile LIDAR system continuously monitored shoot development under optimal (C) and reduced (S) water supply. Six 3D images per day provided time courses of plant height (PH), leaf area (A3D), projected leaf area (A2D) and leaf angle (LA). The evaluation workflow employed logistic regression to estimate initial slope (k), inflection point (Tm) and maximum (Mx) for the growth curves of PH and A2D. Genotype × environment interaction affected all parameters significantly. Tm(A2D)ₛ and Mx(A2D)ₛ correlated significantly positive with drought tolerance, and Mx(PH)ₛ correlated negatively. Drought tolerance was not associated with LAc, but correlated significantly with the LAₛ during late night and at dawn. Drought-tolerant genotypes had a lower LAₛ than drought-sensitive genotypes, thus resembling unstressed plants. The decision tree model selected Tm(A2D)ₛ and Mx(PH)c as the most important parameters for tolerance class prediction. The model predicted sensitive genotypes more reliably than tolerant genotype and may thus complement the previously published model based on leaf metabolites/transcripts.
Why it matches plant phenotyping methods自動LIDARによる連続3D画像取得と、植物形態・成長形質の抽出および解析ワークフローが、乾燥耐性評価の中心的手法として用いられている。
abstractwe investigated a selection based on phenotypic markers derived from automatic phenotyping systems.
Reproduction assets foundThe paper's LIDAR phenotyping and yield data are deposited publicly in E!DAL (Köhl et al. 2022, doi 10.5447/ipk/2022/12). The SAS analysis scripts are only available from the corresponding author (request_only).Dataset · publicData availability All data are available at E!DAL (Köhl et al. 2022). Material and SAS scripts used for
evaluation are available from the corresponding author.Open asset ↗E!DALpdf-page:27 lines:1-62Code / dataset availability confirmedEurope PMC · checked 15 Sept 2026
The epidermal leaf patterns of plants exhibit remarkable diversity in cell shapes, sizes, and arrangements, driven by environmental interactions that lead to significant adaptive changes even among closely related species. The Solanaceae family, known for its high diversity of adaptive epidermal structures, has traditionally been studied using qualitative phenotypic descriptions. To advance this, we developed a workflow combining multi-scale computer vision, image processing, and data analysis to extract digital descriptors for leaf epidermal cell morphology. Applied to nine wild potato species, this workflow quantified key morphological parameters, identifying descriptors for trichomes, stomata, and pavement cells, and revealing interdependencies among these traits. Principal component analysis (PCA) highlighted two main axes, accounting for 45% and 21% of variance, corresponding to features such as guard cell shape, trichome length, stomatal density, and trichome density. These axes aligned well with the historical and geographical origins of the species, separating southern from Central American species, and forming distinct clusters for monophyletic groups. This workflow thus establishes a quantitative foundation for investigating leaf epidermal cell morphology within phylogenetic and geographic contexts.
Why it matches plant phenotyping methods葉表皮細胞の形態形質を画像から抽出・定量するコンピュータビジョン／画像処理ワークフローの開発と適用が研究の中心であるため、植物フェノタイピング手法として収載する。
abstractwe developed a workflow combining multi-scale computer vision, image processing, and data analysis to extract digital descriptors for leaf epidermal cell morphology.
Reproduction assets foundThe paper's quantitative phenotyping measurements (trichome types and morphometric parameters of leaf epidermal cells for nine wild potato species) are publicly available as Supplementary Tables S1 and S2 at the MDPI supplementary URL. Microscopy images are not publicly deposited and are available only upon request; noSupplement · publicObjects of the Institute of Cytology and Genetics SB RAS.
Abbreviations
The following abbreviations are used in this manuscript:
LSM
Laser scanning microscopy
PI
Propidium iodide
DAPI
4′,6-diamidino-2-phenylindole
PCA
Principal component analysis
Supplementary Materials
The following supporting information can be downloaded at https://www.mdpi.com/article/10.3390/plants13213084/s1 , Table S1: Trichome types for the studied wild potato species; Table S2: Morphometric parameters for leaf epidermal cells of the studied wild potato species, including Area, Length, Width, Elongation, Circularity, Rectangularity, Perimeter, Convex Hull Area, Convex Hull Perimeter, and Convex Hull Coverage.
Author Open asset ↗lines:139-176Code / dataset availability confirmedCrossref · checked 14 Sept 2026
Agricultural productivity is one of the critical factors towards ensuring food security across the globe. However, some of the main crops, such as potato, tomato, and mango, are usually infested by leaf diseases, which considerably lower yield and quality. The traditional practice of diagnosing disease through visual inspection is labor-intensive, time-consuming, and can lead to numerous errors. To address these challenges, this study evokes the AgirLeafNet model, a deep learning-based solution with a hybrid of NASNetMobile for feature extraction and Few-Shot Learning (FSL) for classification. The Excess Green Index (ExG) is a novel approach that is a specified vegetation index that can further the ability of the model to distinguish and detect vegetative properties even in scenarios with minimal labeled data, demonstrating the tremendous potential for this application. AgirLeafNet demonstrates outstanding accuracy, with 100% accuracy for potato detection, 92% for tomato, and 99.8% for mango leaves, producing incredibly accurate results compared to the models already in use, as described in the literature. By demonstrating the viability of a deep learning/IoT system architecture, this study goes beyond the current state of multi-crop disease detection. It provides practical, effective, and efficient deep-learning solutions for sustainable agricultural production systems. The innovation of the model emphasizes its multi-crop capability, precision in results, and the suggested use of ExG to generate additional robust disease detection methods for new findings. The AgirLeafNet model is setting an entirely new standard for future research endeavors.
Why it matches plant phenotyping methods葉画像から植物病害状態を推定する深層学習手法の開発・比較が中心であり、植物表現型計測法として採用する。
abstractthis study evokes the AgirLeafNet model, a deep learning-based solution with a hybrid of NASNetMobile for feature extraction and Few-Shot Learning (FSL) for classification.
Reproduction assets foundThe paper's Data Availability Statement explicitly lists three public Kaggle leaf-image datasets (potato, tomato, mango) that constitute the phenotyping image inputs used for the study's disease-detection experiments. No author analysis code or trained model checkpoints are reported.Dataset · publicAgronomy 2024, 14, 2230 32 of 33
Data Availability Statement: These data were derived from the following resources available in
the public domain: Potato Plant Diseases Data (https://www.kaggle.com/datasets/hafiznouman
786/potato-plant-diseases-data) (accessed on 22 September 2024), Tomato Leaf Diseases Dataset
(https://www.kaggle.com/datasets/kaustubhb999/tomatoleaf) (accessed on 22 September 2024),
Mango Leaf Disease Dataset (https://www.kaggle.com/datasets/aryashah2k/mango-leaf-disease-dataset) (accessed on 22 September 2024).
Conflicts ofOpen asset ↗Kagglepdf-raw-page:32 lines:1-53Dataset · publicAgronomy 2024, 14, 2230 32 of 33
Data Availability Statement: These data were derived from the following resources available in
the public domain: Potato Plant Diseases Data (https://www.kaggle.com/datasets/hafiznouman
786/potato-plant-diseases-data) (accessed on 22 September 2024), Tomato Leaf Diseases Dataset
(https://www.kaggle.com/datasets/kaustubhb999/tomatoleaf) (accessed on 22 September 2024),
Mango Leaf Disease Dataset (https://www.kaggle.com/datasets/aryashah2k/mango-leaf-disease-dataset) (accessed on 22 September 2024).
Conflicts of Interest: The authors declare that there are no conflicts of interest regarding the publica-
tion of this study.
References
1. Mohanty, S.P.; Hughes,Open asset ↗Kagglepdf-raw-page:32 lines:1-53Dataset · publicng resources available in
the public domain: Potato Plant Diseases Data (https://www.kaggle.com/datasets/hafiznouman
786/potato-plant-diseases-data) (accessed on 22 September 2024), Tomato Leaf Diseases Dataset
(https://www.kaggle.com/datasets/kaustubhb999/tomatoleaf) (accessed on 22 September 2024),
Mango Leaf Disease Dataset (https://www.kaggle.com/datasets/aryashah2k/mango-leaf-disease-dataset) (accessed on 22 September 2024).
Conflicts of Interest: The authors declare that there are no conflicts of interest regarding the publica-
tion of this study.
References
1. Mohanty, S.P.; Hughes, D.P.; Salathé, M. Using Deep Learning for Image-Based Plant Disease Detection. Front. Plant Sci. 2016,
Open asset ↗Kagglepdf-raw-page:32 lines:1-53Code / dataset availability confirmedEurope PMC · checked 7 Sept 2026
Potato (Solanum tuberosum L.) is the most widely grown vegetable in the world. Consumers and processors evaluate potatoes based on quality traits such as shape and skin color, making these traits important targets for breeders. Achieving and evaluating genetic gain is facilitated by precise and accurate trait measures. Historically, quality traits have been measured using visual rating scales, which are subject to human error and necessarily lump individuals with distinct characteristics into categories. Image analysis offers a method of generating quantitative measures of quality traits. In this study, we use TubAR, an image-analysis R package, to generate quantitative measures of shape and skin color traits for use in genomic prediction. We developed and compared different genomic models based on additive and additive plus non-additive relationship matrices for two aspects of skin color, redness, and lightness, and two aspects of shape, roundness, and length-to-width ratio for fresh market red and yellow potatoes grown in Minnesota between 2020 and 2022. Similarly, we used the much larger chipping potato population grown during the same time to develop a multi-trait selection index including roundness, specific gravity, and yield. Traits ranged in heritability with shape traits falling between 0.23 and 0.85, and color traits falling between 0.34 and 0.91. Genetic effects were primarily additive with color traits showing the strongest effect (0.47), while shape traits varied based on market class. Modeling non-additive effects did not significantly improve prediction models for quality traits. The combination of image analysis and genomic prediction presents a promising avenue for improving potato quality traits.
Why it matches plant phenotyping methodsTubARによる画像解析でジャガイモの形状・皮色を定量化する手法が、ゲノム予測への主要な入力として明示されており、単なる routine 測定ではない。
abstractImage analysis offers a method of generating quantitative measures of quality traits.
Reproduction assets foundThe paper's data availability statement points to a public GitHub repository containing all data and scripts used for the phenotyping and genomic prediction analysis.Code · publicAll data and scripts used for this work are available at: https://github.com/shannonlabumn/GSQualityTraits .Open asset ↗shannonlabumn/GSQualityTraitslines:1105-1109Code / dataset availability confirmedarXiv · OpenAlex · checked 13 Sept 2026
Potato yield is an important metric for farmers to further optimize their cultivation practices. Potato yield can be estimated on a harvester using an RGB-D camera that can estimate the three-dimensional (3D) volume of individual potato tubers. A challenge, however, is that the 3D shape derived from RGB-D images is only partially completed, underestimating the actual volume. To address this issue, we developed a 3D shape completion network, called CoRe++, which can complete the 3D shape from RGB-D images. CoRe++ is a deep learning network that consists of a convolutional encoder and a decoder. The encoder compresses RGB-D images into latent vectors that are used by the decoder to complete the 3D shape using the deep signed distance field network (DeepSDF). To evaluate our CoRe++ network, we collected partial and complete 3D point clouds of 339 potato tubers on an operational harvester in Japan. On the 1425 RGB-D images in the test set (representing 51 unique potato tubers), our network achieved a completion accuracy of 2.8 mm on average. For volumetric estimation, the root mean squared error (RMSE) was 22.6 ml, and this was better than the RMSE of the linear regression (31.1 ml) and the base model (36.9 ml). We found that the RMSE can be further reduced to 18.2 ml when performing the 3D shape completion in the center of the RGB-D image. With an average 3D shape completion time of 10 milliseconds per tuber, we can conclude that CoRe++ is both fast and accurate enough to be implemented on an operational harvester for high-throughput potato yield estimation. CoRe++'s high-throughput and accurate processing allows it to be applied to other tuber, fruit and vegetable crops, thereby enabling versatile, accurate and real-time yield monitoring in precision agriculture. Our code, network weights and dataset are publicly available at https://github.com/UTokyo-FieldPhenomics-Lab/corepp.git.
Why it matches plant phenotyping methodsRGB-D画像からジャガイモ塊茎の3D形状を補完し、体積・収量を推定する手法を開発・検証しており、植物フェノタイピング手法が研究の中心である。
abstractwe developed a 3D shape completion network, called CoRe++, which can complete the 3D shape from RGB-D images.
Reproduction assets foundThe paper's abstract explicitly states that the authors' code, network weights, and the potato tuber RGB-D/3D point cloud dataset are publicly available at the authors' GitHub repository (UTokyo-FieldPhenomics-Lab/corepp), which is a paper-specific, public, actionable asset for the CoRe++ phenotyping analysis.Code · publicOur code, network weights and dataset are publicly available at https://github.com/UTokyo-FieldPhenomics-Lab/corepp.git .Open asset ↗UTokyo-FieldPhenomics-Lab/corepplines:1-93Code / dataset availability confirmedEurope PMC · checked 15 Sept 2026
Agriculture plays a vital role in Bangladesh's economy. It is essential to ensure the proper growth and health of crops for the development of the agricultural sector. In the context of Bangladesh, crop diseases pose a significant threat to agricultural output and, consequently, food security. This necessitates the timely and precise identification of such diseases to ensure the sustainability of food production. This study focuses on building a hybrid deep learning model for the identification of three specific diseases affecting three major crops: late blight in potatoes, brown spot in rice, and common rust in corn. The proposed model leverages EfficientNetB0's feature extraction capabilities, known for achieving rapid high learning rates, coupled with the classification proficiency of SVMs, a well-established machine learning algorithm. This unified approach streamlines data processing and feature extraction, potentially improving model generalizability across diverse crops and diseases. It also aims to address the challenges of computational efficiency and accuracy that are often encountered in precision agriculture applications. The proposed hybrid model achieved 97.29% accuracy. A comparative analysis with other models, CNN, VGG16, ResNet50, Xception, Mobilenet V2, Autoencoders, Inception v3, and EfficientNetB0 each achieving an accuracy of 86.57%, 83.29%, 68.79%, 94.07%, 90.71%, 87.90%, 94.14%, and 96.14% respectively, demonstrated the superior performance of our proposed model.
Why it matches plant phenotyping methods植物病害を画像等の観察から識別する深層学習・SVM手法の構築と性能比較が研究の中心であり、植物の病害状態を推定するフェノタイピング手法に該当します。
abstractThis study focuses on building a hybrid deep learning model for the identification of three specific diseases affecting three major crops: late blight in potatoes, brown spot in rice, and common rust in corn.
Reproduction assets foundThe paper's crop disease image dataset is publicly available on Kaggle (Bangladeshi Crops Disease Dataset), explicitly cited as the open-source image source used for the study's phenotyping/classification experiments. The authors' additionally collected 1334 field images and their analysis code/trained model are not公开;Dataset · publicung-EffNet: Lung Cancer Classification Using EfficientNet from CT-Scan Images
Eng. Appl. Artif. Intell. 2023 126 106902
10.1016/j.engappai.2023.106902
23.
Huang Z.
Su L.
Wu J.
Chen Y.
Rock Image Classification Based on EfficientNet and Triplet Attention Mechanism
Appl. Sci. 2023 13 3180
10.3390/app13053180
24. Available online: https://www.kaggle.com/datasets/nafishamoin/bangladeshi-crops-disease-dataset (accessed on 11 June 2023)
25.
Atila U.
Uçar M.
Akyol K.
Uçar E.
Plant leaf disease classification using EfficientNet deep learning model
Ecol. Inform. 2021 61 101182
10.1016/j.ecoinf.2020.101182
26.
Padol P.B.
Yadav A.A.
SVM classifier-based grape leaf disease detection
Proceedings of the 2Open asset ↗Kaggle · bangladeshi-crops-disease-datasetlines:139-314Code / dataset availability confirmedCrossref · Europe PMC · checked 7 Sept 2026
Hyperspectral imaging has emerged as a pivotal technology in agricultural research, offering a powerful means to non-invasively monitor stress factors, such as drought, in crops like potato plants. In this context, the integration of attention-based deep learning models presents a promising avenue for enhancing the efficiency of stress detection, by enabling the identification of meaningful spectral channels. This study assesses the performance of deep learning models on two potato plant cultivars exposed to water-deficient conditions. It explores how various sampling strategies and biases impact the classification metrics by using a dual-sensor hyperspectral imaging systems (VNIR -Visible and Near-Infrared and SWIR—Short-Wave Infrared). Moreover, it focuses on pinpointing crucial wavelengths within the concatenated images indicative of water-deficient conditions. The proposed deep learning model yields encouraging results. In the context of binary classification, it achieved an area under the receiver operating characteristic curve (AUC-ROC—Area Under the Receiver Operating Characteristic Curve) of 0.74 (95% CI: 0.70, 0.78) and 0.64 (95% CI: 0.56, 0.69) for the KIS Krka and KIS Savinja varieties, respectively. Moreover, the corresponding F1 scores were 0.67 (95% CI: 0.64, 0.71) and 0.63 (95% CI: 0.56, 0.68). An evaluation of the performance of the datasets with deliberately introduced biases consistently demonstrated superior results in comparison to their non-biased equivalents. Notably, the ROC-AUC values exhibited significant improvements, registering a maximum increase of 10.8% for KIS Krka and 18.9% for KIS Savinja. The wavelengths of greatest significance were observed in the ranges of 475–580 nm, 660–730 nm, 940–970 nm, 1420–1510 nm, 1875–2040 nm, and 2350–2480 nm. These findings suggest that discerning between the two treatments is attainable, despite the absence of prominently manifested symptoms of drought stress in either cultivar through visual observation. The research outcomes carry significant implications for both precision agriculture and potato breeding. In precision agriculture, precise water monitoring enhances resource allocation, irrigation, yield, and loss prevention. Hyperspectral imaging holds potential to expedite drought-tolerant cultivar selection, thereby streamlining breeding for resilient potatoes adaptable to shifting climates.
Why it matches plant phenotyping methodsジャガイモの水欠乏状態をハイパースペクトル画像と深層学習で識別し、性能評価および重要波長の同定を行っており、植物ストレス表現型の取得・抽出手法が中心である。
abstractHyperspectral imaging has emerged as a pivotal technology in agricultural research, offering a powerful means to non-invasively monitor stress factors, such as drought, in crops like potato plants.
Reproduction assets foundThe paper's Data Availability Statement explicitly deposits the pre-processed hyperspectral dataset on Zenodo and the authors' analysis code on GitHub, both with public URLs matching allowed_urls. The SiaPy Zenodo record is a generic open-source library, not a paper-specific asset.Code · publicand code at https://github.com/janezlapajne/manuscripts (accessed on 8 July 2024)Open asset ↗github · janezlapajne/manuscriptslines:104-424Code / dataset availability confirmedCrossref · checked 14 Sept 2026
This paper proposes a study conducted on various techniques that can be employed for the early detection of plant diseases. With exponential growth in the global population, there is a dire need for the detection and prevention of various types of plant diseases such as Mosaic virus in Solanum Lycopersicon (tomato), bacterial spot in Fragaria Ananassa (strawberry), late and early blight in Solanum Tuberosum (potato), huanglongbing in Citrus sinensis (orange), and Isariopsis leaf spot in Vitis vinifera (grapes). These diseases generally lead to lower yields and hence less profit. In the last two decades, there has been rapid development in the fields of image processing and deep learning. Various models of deep learning can be used for plant disease detection. The main objective is that as soon as plant leaf disease appears, there should be one device to monitor the symptoms and detect them over a large field with as much accuracy as possible. This study compares the deep learning models Resnet, MobileNet, and inceptionV3 that are implemented on a large dataset taken from the Kaggle repository. We implemented the models using Google Colaboratory tools, which provide us with Python’s Jupyter notebook that runs on the Google cloud server. The GPU “Tesla T4” and CPU “Intel Xenon” were used during training, validation, and testing respectively. The training and validation accuracy of the InceptionV3 model was 98.78% and 93.94%, respectively. MobileNet classified various plant diseases with training and validation accuracies of 99.57% and 97.31. Similarly, for ResNet, the training accuracy was found to be around 99.62% and the validation accuracy was 97.16%. We hope that this work will provide a helpful resource for other researchers working in the field of agriculture to detect various types of crop diseases. Future work and some challenges still faced are also discussed in this study.
Why it matches plant phenotyping methods植物葉の病徴を画像から分類する深層学習手法を比較評価しており、病害状態の表現型推定と手法検証が研究の中心である。
abstractThis paper proposes a study conducted on various techniques that can be employed for the early detection of plant diseases.
Reproduction assets foundThe paper's plant-disease classification experiments are built entirely on two public leaf-image datasets: the augmented New Plant Diseases Dataset from Kaggle (87.9k RGB leaf images, 38 classes) and the original PlantVillage-Dataset on GitHub. Both are explicitly cited with public URLs and directly constitute the phenDataset · publicWe used the New Plant Disease Dataset (augmented) [18],
which can be found in the Kaggle repository.Open asset ↗Kagglepdf-raw-page:3 lines:1-117Code / dataset availability confirmedOpenAlex · Europe PMC · checked 7 Sept 2026
To maximise the throughput of novel, high-throughput phenotyping platforms, many researchers have utilised smaller pot sizes to increase the number of biological replicates that can be grown in spatially limited controlled environments. This may confound plant development through a process known as “pot binding”, particularly in larger species including potato (Solanum tuberosum), and under water-restricted conditions. We aimed to investigate the water availability hypothesis of pot binding, which predicts that small pots have insufficient water holding capacities to prevent drought stress between irrigation periods, in potato. Two cultivars of potato were grown in small (5 L) and large (20 L) pots, were kept under polytunnel conditions, and were subjected to three irrigation frequencies: every other day, daily, and twice daily. Plants were phenotyped with two Phenospex PlantEye F500s and canopy and tuber fresh mass and dry matter were measured. Increasing irrigation frequency from every other day to daily was associated with a significant increase in fresh tuber yield, but only in large pots. This suggests a similar level of drought stress occurred between these treatments in the small pots, supporting the water availability hypothesis of pot binding. Further increasing irrigation frequency to twice daily was still not sufficient to increase yields in small pots but it caused an insignificant increase in yield in the larger pots, suggesting some pot binding may be occurring in large pots under daily irrigation. Canopy temperatures were significantly higher under each irrigation frequency in the small pots compared to large pots, which strongly supports the water availability hypothesis as higher canopy temperatures are a reliable indicator of drought stress in potato. Digital phenotyping was found to be less accurate for larger plants, probably due to a higher degree of self-shading. The research demonstrates the need to define the optimum pot size and irrigation protocols required to completely prevent pot binding and ensure drought treatments are not inadvertently applied to control plants.
Why it matches plant phenotyping methodsPlantEyeを用いたデジタルフェノタイピングの適用と精度評価が研究上の主要要素であり、植物のキャノピー温度や成長状態を測定し、植物サイズによる測定精度低下も検討している。
abstractPlants were phenotyped with two Phenospex PlantEye F500s and canopy and tuber fresh mass and dry matter were measured.
Reproduction assets foundThe paper's data availability statement points to a public Zenodo deposit containing the datasets generated and analysed in this potato pot-binding phenotyping study.Dataset · publicThe datasets generated and analysed for this study can be found in the Zendo repository at https://doi.org/10.5281/zenodo.10707587 .Open asset ↗Zenodo · 10.5281/zenodo.10707587lines:845-856Code / dataset availability confirmedCrossref · checked 7 Sept 2026
Abstract Farmers face the formidable challenge of meeting the increasing demands of a rapidly growing global population for agricultural products, while plant diseases continue to wreak havoc on food production. Despite substantial investments in disease management, agriculturists are increasingly turning to advanced technology for more efficient disease control. This paper addresses this critical issue through an exploration of a deep learning-based approach to disease detection. Utilizing an optimized Convolutional Neural Network (E-CNN) architecture, the study concentrates on the early detection of prevalent leaf diseases in Apple, Corn, and Potato crops under various conditions. The research conducts a thorough performance analysis, emphasizing the impact of hyperparameters on plant disease detection across these three distinct crops. Multiple machine learning and pre-trained deep learning models are considered, comparing their performance after fine-tuning their parameters. Additionally, the study investigates the influence of data augmentation on detection accuracy. The experimental results underscore the effectiveness of our fine-tuned enhanced CNN model, achieving an impressive 98.17% accuracy in fungal classes. This research aims to pave the way for more efficient plant disease management and, ultimately, to enhance agricultural productivity in the face of mounting global challenges. To improve accessibility for farmers, the developed model seamlessly integrates with a mobile application, offering immediate results upon image upload or capture. In case of a detected disease, the application provides detailed information on the disease, its causes, and available treatment options.
Why it matches plant phenotyping methods植物葉の病徴を画像から検出・分類するCNN手法の開発と性能比較が研究の中心であり、植物の病害状態を直接推定しているため。
abstractMultiple machine learning and pre-trained deep learning models are considered, comparing their performance after fine-tuning their parameters.
Reproduction assets foundThe paper trains and evaluates its E-CNN plant disease detection models on the public PlantVillage Kaggle dataset (apple, corn, potato leaf images). No author-generated datasets, code, or models are released; the data availability statement says no datasets were generated or analysed. The only qualifying paper-specificDataset · publicPlantVillage Dataset (2023) [Online]. Available: https://www.kaggle.com/datasets/abdallahalidev/plantOpen asset ↗Kaggle · PlantVillage Datasetpdf-page:28 lines:1-67Code / dataset availability confirmedCrossref · Europe PMC · checked 7 Sept 2026
Abstract Background The sweet potato whitefly ( Bemisia tabaci ) is a globally important insect pest that damages crops through direct feeding and by transmitting viruses. Current B. tabaci management revolves around the use of insecticides, which are economically and environmentally costly. Host plant resistance is a sustainable option to reduce the impact of whiteflies, but progress in deploying resistance in crops has been slow. A major obstacle is the high cost and low throughput of screening plants for B. tabaci resistance. Oviposition rate is a popular metric for host plant resistance to B. tabaci because it does not require tracking insect development through the entire life cycle, but accurate quantification is still limited by difficulties in observing B. tabaci eggs, which are microscopic and translucent. The goal of our study was to improve quantification of B. tabaci eggs on several important crop species: cassava, cowpea, melon, sweet potato and tomato. Results We tested a selective staining process originally developed for leafhopper eggs: submerging the leaves in McBryde’s stain (acetic acid, ethanol, 0.2% aqueous acid Fuchsin, water; 20:19:2:1) for three days, followed by clearing under heat and pressure for 15 min in clearing solution (LGW; lactic acid, glycerol, water; 17:20:23). With a less experienced individual counting the eggs, B. tabaci egg counts increased after staining across all five crops. With a more experienced counter, egg counts increased after staining on melons, tomatoes, and cowpeas. For all five crops, there was significantly greater agreement on egg counts across the two counting individuals after the staining process. The staining method worked particularly well on melon, where egg counts universally increased after staining for both counting individuals. Conclusions Selective staining aids visualization of B. tabaci eggs across multiple crop plants, particularly species where leaf morphological features obscure eggs, such as melons and tomatoes. This method is broadly applicable to research questions requiring accurate quantification of B. tabaci eggs, including phenotyping for B. tabaci resistance.
Why it matches plant phenotyping methods植物葉上のコナジラミ卵を染色して定量し、計数値と計数者間一致を改善する方法を評価しており、抵抗性フェノタイピングへの応用が明示された中心的な手法研究。
abstractThe goal of our study was to improve quantification of B. tabaci eggs on several important crop species: cassava, cowpea, melon, sweet potato and tomato.
Reproduction assets foundThe paper's Data availability statement explicitly deposits the study's egg-count datasets and the R Markdown analysis code in a Dryad repository, which is a public, paper-specific asset directly reproducing the phenotyping measurements and analysis.Dataset · publicThe datasets generated and analyzed during this study, and an R Markdown document containing the code used to perform these analyses are available in a Dryad repository (DOI: doi: https://doi.org/10.5061/dryad.vmcvdnd1m ).Open asset ↗Dryad · 10.5061/dryad.vmcvdnd1mlines:138-163Code / dataset availability confirmedEurope PMC · checked 14 Sept 2026
Abstract Potato is a popular crop that is cultivated in many different climates. Potato farming has recently gained incredible traction, increasing relevance in international agricultural production. Potatoes are susceptible to several illnesses that stunt their development. This plant has significant leaf disease. Early blight (EB) and late blight (LB) are the two devastating leaf diseases for potato plants. The early detection of these diseases would be beneficial for enhancing the yield of this crop. The ideal solution is image processing to identify and analyze these disorders. Using image processing and machine learning, we detail a method that requires no outside help to detect late-blight potato leaf in this article. The pro- posed method comprises four different phases: (1) Histogram input images may improve from equalization to boost their overall quality; (2) feature extraction is performed using a Deep CNN model, then these extracted features are concatenated; (3) feature selection is performed using wrapper-based feature selection; (4) classification is performed using an SVM classifier and its variants. By utilizing SVM and a meticulously selected set of 550 characteristics, the suggested technique achieves an unprecedented 99% accuracy.
Why it matches plant phenotyping methodsジャガイモ葉の病害状態を画像から推定する深層学習・特徴選択・分類手法が研究の中心であり、植物病害表現型の取得・推定に該当する。
abstractThe ideal solution is image processing to identify and analyze these disorders.
Predictive breeding approaches, like phenomic or genomic selection, have the potential to increase the selection gain for potato breeding programs which are characterized by very large numbers of entries in early stages and the availability of very few tubers per entry in these stages. The objectives of this study were to (i) explore the capabilities of phenomic prediction based on drone-derived multispectral reflectance data in potato breeding by testing different prediction scenarios on a diverse panel of tetraploid potato material from all market segments and considering a broad range of traits, (ii) compare the performance of phenomic and genomic predictions, and (iii) assess the predictive power of mixed relationship matrices utilizing weighted SNP array and multispectral reflectance data. Predictive abilities of phenomic prediction scenarios varied greatly within a range of - 0.15 and 0.88 and were strongly dependent on the environment, predicted trait, and considered prediction scenario. We observed high predictive abilities with phenomic prediction for yield (0.45), maturity (0.88), foliage development (0.73), and emergence (0.73), while all other traits achieved higher predictive ability with genomic compared to phenomic prediction. When a mixed relationship matrix was used for prediction, higher predictive abilities were observed for 20 out of 22 traits, showcasing that phenomic and genomic data contained complementary information. We see the main application of phenomic selection in potato breeding programs to allow for the use of the principle of predictive breeding in the pot seedling or single hill stage where genotyping is not recommended due to high costs.
Why it matches plant phenotyping methodsドローン由来マルチスペクトルデータを用いたフェノミック予測をジャガイモ育種に適用し、複数の予測シナリオやゲノム予測との性能比較を行っており、植物形質推定法が中心である。
abstractexplore the capabilities of phenomic prediction based on drone-derived multispectral reflectance data in potato breeding
Reproduction assets foundThe paper's phenotypic and multispectral datasets are not publicly available (company secret, available upon request in encoded form), but the authors' R analysis scripts are explicitly stated to be publicly available on GitHub.Code · publicCode availability
R scripts for data analysis are available on GitHub: https://github.com/AlessioMR/ps_in_potato_breeding .Open asset ↗AlessioMR/ps_in_potato_breedinglines:179-254Code / dataset availability confirmedCrossref · checked 14 Sept 2026
Artificial intelligence techniques are now widely used in various agricultural applications, including the detection of devastating diseases such as late blight (Phytophthora infestans) and early blight (Alternaria solani) affecting potato (Solanum tuberorsum L.) crops. In this paper, we present a mobile application for detecting potato crop diseases based on deep neural networks. The images were taken from the PlantVillage dataset with a batch of 1000 images for each of the three identified classes (healthy, early blight-diseased, late blight-diseased). An exploratory analysis of the architectures used for early and late blight diagnosis in potatoes was performed, achieving an accuracy of 98.7%, with MobileNetv2. Based on the results obtained, an offline mobile application was developed, supported on devices with Android 4.1 or later, also featuring an information section on the 27 diseases affecting potato crops and a gallery of symptoms. For future work, segmentation techniques will be used to highlight the damaged region in the potato leaf by evaluating its extent and possibly identifying different types of diseases affecting the same plant.
Why it matches plant phenotyping methodsジャガイモ葉画像から病害状態を推定する深層学習手法とモバイルアプリが研究の中心であり、植物の病害表現型を直接評価している。
abstractwe present a mobile application for detecting potato crop diseases based on deep neural networks.
Reproduction assets found保存済みの本文根拠を更新済みルールで再検証し、公開資産1件を確認しました。Dataset · publicThe data used in this study are extracted from the PlantVillage dataset ( https://www.kaggle.com/datasets/emmarex/plantdisease , accessed on 12 December 2023).Open asset ↗kaggle.com/datasets/emmarex/plantdiseaselines:28-39Code / dataset availability confirmedEurope PMC · Crossref · checked 7 Sept 2026
Abstract Farmers face a daunting challenge in meeting the escalating demands of a rapidly growing population for agricultural products, while plant diseases continue to exact a devastating toll on food production. Despite investing billions of dollars in disease management, agriculturists often struggle to achieve effective disease control without the support of advanced technology. The article explores a deep learning-based approach for disease detection. Specifically, it employs a Convolutional Neural Network (CNN) architecture for the detection. For the automated detection of plant disease, using plant images. This paper presents a new model for the early detection of plant detection based on processing plant images. And compare the in-depth performance analysis of hyper parameters in the context of plant disease detection by focusing on three distinct crops: (Apple, Corn, and Potato). Moreover, the data augmentation impact is analyzed. To enhance accessibility for farmers, our model is seamlessly integrated with a mobile application. The experimental results show the efficiency of our fine-tuned enhanced CNN model (E-CNN) achieving 98.17% accuracy on fungal classes. This research endeavors to pave the way for more effective plant disease management and ultimately to improve agricultural productivity in the face of mounting global challenges.
Why it matches plant phenotyping methods植物画像から病害状態を推定するCNNを開発・評価し、ハイパーパラメータとデータ拡張の性能分析も行っているため、病害フェノタイピング手法が中心です。
abstractThe article explores a deep learning-based approach for disease detection.
Reproduction assets foundThe paper's plant disease detection experiments are built on the public PlantVillage image dataset, which the authors explicitly cite with a Kaggle URL. No author-generated code, trained model checkpoints, or supplementary data deposits are mentioned.Dataset · public[21] “PlantVillage Dataset.” Accessed: Dec. 05, 2023. [Online]. Available:
https://www.kaggle.com/datasets/abdallahalidev/plantvillage-datasetOpen asset ↗Kaggle · plantvillage-datasetpdf-page:28 lines:1-61Code / dataset availability confirmedEurope PMC · checked 15 Sept 2026
The primary objective of this study is to develop an advanced, automated system for the early detection and classification of leaf diseases in potato plants, which are among the most cultivated vegetable crops worldwide. These diseases, notably early and late blight caused by Alternaria solani and Phytophthora infestans , significantly impact the quantity and quality of global potato production. We hypothesize that the integration of Vision Transformer (ViT) and ResNet-50 architectures in a new model, named EfficientRMT-Net, can effectively and accurately identify various potato leaf diseases. This approach aims to overcome the limitations of traditional methods, which are often labor-intensive, time-consuming, and prone to inaccuracies due to the unpredictability of disease presentation. EfficientRMT-Net leverages the CNN model for distinct feature extraction and employs depth-wise convolution (DWC) to reduce computational demands. A stage block structure is also incorporated to improve scalability and sensitive area detection, enhancing transferability across different datasets. The classification tasks are performed using a global average pooling layer and a fully connected layer. The model was trained, validated, and tested on custom datasets specifically curated for potato leaf disease detection. EfficientRMT-Net's performance was compared with other deep learning and transfer learning techniques to establish its efficacy. Preliminary results show that EfficientRMT-Net achieves an accuracy of 97.65% on a general image dataset and 99.12% on a specialized Potato leaf image dataset, outperforming existing methods. The model demonstrates a high level of proficiency in correctly classifying and identifying potato leaf diseases, even in cases of distorted samples. The EfficientRMT-Net model provides an efficient and accurate solution for classifying potato plant leaf diseases, potentially enabling farmers to enhance crop yield while optimizing resource utilization. This study confirms our hypothesis, showcasing the effectiveness of combining ViT and ResNet-50 architectures in addressing complex agricultural challenges.
Why it matches plant phenotyping methodsジャガイモ葉の病害状態を画像から分類する深層学習手法を開発・検証しており、植物病害表現型の取得・推定が研究の中心である。
abstractdevelop an advanced, automated system for the early detection and classification of leaf diseases in potato plants
Reproduction assets foundThe paper uses the public PlantVillage leaf image dataset (hosted on Mendeley Data) to train and evaluate EfficientRMT-Net; no author code or trained model is released.Dataset · publichave read and agreed to the published version of the manuscript.
Institutional Review Board Statement
Not applicable.
Informed Consent Statement
Not applicable.
Data Availability Statement
A standard online dataset, PlantVillage [ 32 ], is utilized in this paper to evaluate the EfficientRMT-Net model. It can be downloaded from https://data.mendeley.com/datasets/tywbtsjrjv/1 (accessed on 12 July 2023).
Conflicts of Interest
The authors declare no conflict of interest.
Funding Statement
This work was supported and funded by the Deanship of Scientific Research at Imam Mohammad Ibn Saud Islamic University (IMSIU) (grant number IMSIU-RP23063).
Footnotes
Disclaimer/Publisher’s Note: The statementsOpen asset ↗tywbtsjrjv/1lines:683-710Code / dataset availability confirmedCrossref · checked 14 Sept 2026
Published5 Nov 2023International Journal on Recent and Innovation Trends in Computing and CommunicationCited by 0 · OpenAlex ↗
As the fourth most popular basic food in the world,potatoes are widely available. In addition, the worldwidemarket is causing the demand to rise daily. Diseases likeearly and late blight have a significant impact on the quantity and quality of potatoes. Determining which potato leaves are afflicted with a certain illness becomes more challenging when interpreting these diseasesmanually. Thankfully, it is possible to identify potato leafdiseases by examining the leaf conditions. This proposedstudy presents a technique that employs deep learning toidentify the two types of diseases and generates an accurate classifier using heavy designs for convolutionalneural networks, such as GoogleNet, Resnet15, VGG16,and Xception. We achieved 97% accuracy in the first 40 CNN epochs, demonstrating the practicality of the deep neural network approach.
Why it matches plant phenotyping methodsジャガイモ葉の病徴を画像からCNNで分類する手法が研究の中心であり、植物の病害状態を直接推定している。
abstractThis proposedstudy presents a technique that employs deep learning toidentify the two types of diseases and generates an accurate classifier using heavy designs for convolutionalneural networks
Reproduction assets foundThe paper's potato disease classification experiments are built directly on a public Kaggle PlantVillage image dataset (900 training / 300 validation images of Healthy, LateBlight, EarlyBlight potato leaves), which the authors explicitly reference with a public URL. No author code, models, or other paper-specific phenpDataset · publicon to a particular problem.
have a wide definition [26].
Fig 3: Combining an ensemble of classifiers for reducing
classification error and/or model selection.
4.Proposed Work
4.1 Dataset:
In the proposed study, 900 photographs are utilized to trainthe
model, and 300 photos are used for validation. The dataset may
be refered at:
https://www.kaggle.com/abdallahalidev/plantvillagedataset
it was collected using the Kaggle platform. The datasetcontains
images from categories such as Healthy, LateBlight, and Early
Blight.Open asset ↗kaggle.com/abdallahalidev/plantvillagedatasetpdf-raw-page:4 lines:1-74Code / dataset availability confirmedEurope PMC · Crossref · checked 7 Sept 2026
Introduction Recently, plant disease detection and diagnosis procedures have become a primary agricultural concern. Early detection of plant diseases enables farmers to take preventative action, stopping the disease's transmission to other plant sections. Plant diseases are a severe hazard to food safety, but because the essential infrastructure is missing in various places around the globe, quick disease diagnosis is still difficult. The plant may experience a variety of attacks, from minor damage to total devastation, depending on how severe the infections are. Thus, early detection of plant diseases is necessary to optimize output to prevent such destruction. The physical examination of plant diseases produced low accuracy, required a lot of time, and could not accurately anticipate the plant disease. Creating an automated method capable of accurately classifying to deal with these issues is vital. Method This research proposes an efficient, novel, and lightweight DeepPlantNet deep learning (DL)-based architecture for predicting and categorizing plant leaf diseases. The proposed DeepPlantNet model comprises 28 learned layers, i.e., 25 convolutional layers (ConV) and three fully connected (FC) layers. The framework employed Leaky RelU (LReLU), batch normalization (BN), fire modules, and a mix of 3×3 and 1×1 filters, making it a novel plant disease classification framework. The Proposed DeepPlantNet model can categorize plant disease images into many classifications. Results The proposed approach categorizes the plant diseases into the following ten groups: Apple_Black_rot (ABR), Cherry_(including_sour)_Powdery_mildew (CPM), Grape_Leaf_blight_(Isariopsis_Leaf_Spot) (GLB), Peach_Bacterial_spot (PBS), Pepper_bell_Bacterial_spot (PBBS), Potato_Early_blight (PEB), Squash_Powdery_mildew (SPM), Strawberry_Leaf_scorch (SLS), bacterial tomato spot (TBS), and maize common rust (MCR). The proposed framework achieved an average accuracy of 98.49 and 99.85in the case of eight-class and three-class classification schemes, respectively. Discussion The experimental findings demonstrated the DeepPlantNet model's superiority to the alternatives. The proposed technique can reduce financial and agricultural output losses by quickly and effectively assisting professionals and farmers in identifying plant leaf diseases.
Why it matches plant phenotyping methods葉画像から植物病害状態を分類する深層学習手法を開発しており、植物の病徴・病害状態の取得と推定が研究の中心であるため。
abstractThis research proposes an efficient, novel, and lightweight DeepPlantNet deep learning (DL)-based architecture for predicting and categorizing plant leaf diseases.
Reproduction assets foundThe paper's plant leaf disease classification experiments are built entirely on two public Kaggle image datasets explicitly cited by the authors: the PlantVillage Dataset (eight-class experiment) and the Plant Disease Prediction Dataset (three-class experiment). No author code, trained model, or supplementary deposit (Dataset · publicWe verified the effectiveness and robustness of the DeepPlantNet model by using images from the publicly available Kaggle “PlantVillage Dataset” dataset ( Dataset : https://www.kaggle.com/datasets/abdallahalidev/plantvillage-dataset ).Open asset ↗Kaggle · abdallahalidev/plantvillage-datasetlines:355-366Dataset · publicWe validated our model using another common, publicly accessible Kaggle dataset, “Plant Disease Prediction Dataset,” to assess and estimate the generalizability and performance of the DeepPlantNet model ( Dataset : https://www.kaggle.com/datasets/shuvranshu/plant-disease-prediction-dataset ).Open asset ↗Kaggle · shuvranshu/plant-disease-prediction-datasetlines:729-756Code / dataset availability confirmedEurope PMC · Crossref · checked 14 Sept 2026
Agriculture is one of the indispensable fields for the survival of mankind. Potatoes also have a significant role in the field of agriculture. The quality and quantity of potatoes are significantly impacted by several diseases, such as early blight and late blight, and manual interpretation of these leaf diseases is time-consuming and inconvenient. Fortunately, leaf appearance is used to detect diseases in potato plants. Productivity will considerably rise if the infections are detected early. Different types of image processing methods and machine learning methods are used for early recognition of those diseases from leaf images so that the product losses are decreased significantly. For the incredible and marvelous performance of CNN, it is the most popular deep learning method that is used immensely for the recognition of leaf diseases from images. Several pretrained deep learning models, such as VGG16, ResNet50, InceptionV3, MobileNetV2, Xception, and a deep learning model developed using CNN, are employed for potato leaf disease classification and recognition on the same dataset. The transfer learning technique is applied to the pretrained model and the data augmentation technique is applied to the Proposed CNN model for potato disease classification from leaf samples. Compared to pretrained models, the proposed CNN model offers the lowest loss and highest accuracy for potato leaf disease detection while using fewer parameters and layers. It achieves the best performance with a test accuracy of 99.33% compared to other Pretrained models used in the diagnosis of potato leaf disease.
Why it matches plant phenotyping methodsジャガイモ葉の画像から病害状態を推定するCNN手法を開発・比較しており、植物の病害表現型の取得・分類が研究の中心である。
abstractDifferent types of image processing methods and machine learning methods are used for early recognition of those diseases from leaf images
Reproduction assets found保存済みの本文根拠を更新済みルールで再検証し、公開資産1件を確認しました。Dataset · publicd dataset.
The second option is to manually collect the image data by taking photographs from different fields
using the camera. But this process will be time-consuming. The third option is collecting data from
different websites which has potato images and collecting those images. We have used a ready-made
dataset from Kaggle (https://www.kaggle.com/datasets/muhammadardiputra/potato-leaf-disease-dataset) for our work. Kaggle is a collection of many types of image datasets online. It is a popular
source for many types of image collections. The dataset is split into a training dataset, a validation
dataset, and a test dataset. The dataset has a total of 1500 images of which 900 are for trainiOpen asset ↗Kaggle · muhammadardiputra/potato-leaf-disease-datasetpdf-raw-page:6 lines:1-33Code / dataset availability confirmedEurope PMC · Crossref · checked 7 Sept 2026
Plant phenotyping experiments are conducted under a variety of experimental parameters and settings for diverse purposes. The data they produce is heterogeneous, complicated, often poorly documented and, as a result, difficult to reuse. Meeting societal needs (nutrition, crop adaptation and stability) requires more efficient methods toward data integration and reuse. In this work, we examine what "making data FAIR" entails, and investigate the benefits and the struggles not only of reusing FAIR data, but also making data FAIR using genotype by environment and QTL by environment interactions for developmental traits in potato as a case study. We assume the role of a scientist discovering a phenotypic dataset on a FAIR data point, verifying the existence of related datasets with environmental data, acquiring both and integrating them. We report and discuss the challenges and the potential for reusability and reproducibility of FAIRifying existing datasets, using metadata standards such as MIAPPE, that were encountered in this process.
Why it matches plant phenotyping methods植物フェノタイピングデータセットのFAIR化、統合、再利用性・再現性を扱う研究であり、フェノタイピングデータ基盤とデータ標準化が中心です。
titleThe benefits and struggles of FAIR data: the case of reusing plant phenotyping data
Reproduction assets foundThe paper's FAIRified potato CxE phenotyping datasets (original and processed) and its analysis code (Jupyter notebooks, FDP/triple-store scripts) are publicly deposited on Zenodo and GitHub, with explicit availability statements.Dataset · publicAll associated data, original and processed, is available on Github 15 . The data is located under the paths “ all_containers/ common_files/data-original ” and “ all_containers/common_files/data-generated ”. These two folders ( data-original and data-generated ) are also available on Zenodo 29 .Open asset ↗Zenodolines:191-241Code · publicAll associated code is available on our Github repository and deposited on Zenodo 15 , including Jupyter notebooks to transform data, scripts to run the FDP and the triple store.Open asset ↗Zenodolines:191-241Code / dataset availability confirmedCrossref · checked 14 Sept 2026
The potato plant is amongst the most significant vegetable crops farmed worldwide. The output of potato crop production is significantly reduced by various leaf diseases, which poses a danger to the world’s agricultural production in terms of both volume and quality. The two most destructive foliar infections for potato plants are early and late blight triggered by Alternaria solani and Phytophthora infestans. In actuality, farm owners predict these problems by focusing primarily on the alteration in the color of the potato leaves, which is typically problematic owing to uncertainty and significant time commitment. In these circumstances, it is vital to develop computer-aided techniques that automatically identify these disorders quickly and reliably, even in their early stages. This paper aims to provide an effective solution to recognize the various types of potato diseases by presenting a deep learning (DL) approach called EfficientPNet. More specifically, we introduce an end-to-end training-oriented approach by using the EfficientNet-V2 network to recognize various potato leaf disorders. A spatial-channel attention method is introduced to concentrate on the damaged areas and enhance the approach’s recognition ability to effectively identify numerous infections. To address the problem of class-imbalanced samples and to improve network generalization ability, the EANet model is tuned using transfer learning, and dense layers are added at the end of the model structure to enhance the feature selection power of the model. The model is tested on an open and challenging dataset called PlantVillage, containing images taken in diverse and complicated background conditions, including various lightning conditions and the different color changes in leaves. The model obtains an accuracy of 98.12% on the task of classifying various potato plant leaf diseases such as late blight, early blight, and healthy leaves in 10,800 images. We have confirmed through the performed experiments that our approach is effective for potato plant leaf disease classification and can robustly tackle distorted samples. Hence, farmers can save money and harvest by using the EfficientPNet tool.
Why it matches plant phenotyping methodsジャガイモ葉の画像から病害状態を分類する深層学習手法を開発・評価しており、植物病害フェノタイピングが中心的な貢献である。
abstractThis paper aims to provide an effective solution to recognize the various types of potato diseases by presenting a deep learning (DL) approach called EfficientPNet.
Reproduction assets found保存済みの本文根拠を更新済みルールで再検証し、公開資産1件を確認しました。Dataset · publicData Availability Statement: A standard online dataset PlantVillage [49] is utilized in this paper to
evaluate EfficientPNet model. It can be downloaded from https://data.mendeley.com/datasets/
tywbtsjrjv/1 [accessed on 12 January 2023].Open asset ↗tywbtsjrjv/1pdf-page:16 lines:1-60Code / dataset availability confirmedEurope PMC · Crossref · checked 7 Sept 2026
Abstract Potatoes are ubiquitous and the fourth most consumed staple food in the world. Moreover, the demand is growing daily as a result of the global market. Diseases such as late blight and early blight greatly affect the quality and quantity of potatoes. Interpreting these diseases manually is cumbersome, making it more difficult to identify which potato leaves are infected with one of the diseases. Fortunately, the diseases of the potato leaves can be determined based on the leaf conditions. Using heavy architectures for convolutional neural networks, like GoogleNet, Resnet15, VGG16, and Xception, this suggested study introduces a method that uses deep learning to categorize the two varieties of illnesses and produces a precise classifier. In the first 40 CNN epochs, we were able to attain 97% accuracy, proving the viability of the deep neural network strategy.Also, a deeper analysis of various model building techniques like transfer learning, ensemble, and non-transfer techniques are done and by comparing their accuracy scores the better technique suited for this problem statement is justified.
Why it matches plant phenotyping methodsジャガイモ葉の画像状態から病害を分類するCNN手法が研究の中心であり、植物の病害状態を直接推定する画像ベース表現型解析に該当する。
abstractthis suggested study introduces a method that uses deep learning to categorize the two varieties of illnesses and produces a precise classifier.
Reproduction assets foundThe paper's plant-phenotyping input is the public PlantVillage potato leaf image dataset from Kaggle, explicitly stated as the source of all training/validation images and confirmed in the data availability statement. No author code or models are deposited.Dataset · publicThe dataset was obtained from Kaggle and is available at:
https://www.kaggle.com/abdallahalidev/plantvillagedataset.Open asset ↗Kaggle · abdallahalidev/plantvillagedatasetpdf-page:8 lines:1-45Code / dataset availability confirmedEurope PMC · checked 7 Sept 2026
PotatoMRI / PETTissueClassificationWater status / transpiration
Magnetic Resonance Imaging is a powerful non-destructive tool in the study of plant tissues. For potato tubers, it greatly assists the study of tissue defects and tissue evolution during storage. This paper describes the MRI analysis of potato tubers with internal defects in their flesh tissue at eight sampling dates from 14 to 33 weeks after harvest. Spatialized multi-exponential T2 relaxometry was used to generate bi-exponential T2 maps, coupled with a classification scheme to identify the different T2 homogeneous zones within the tubers. Six classes with statistically different relaxation parameters were identified at each sampling date, allowing the defects and the pith and cortex tissues to be detected. A further distinction could be made between three constitutive elements within the flesh, revealing the heterogeneity of this particular tissue. Relaxation parameters for each class and their evolution during storage were successfully analyzed. The work demonstrated the value of MRI for detailed non-invasive plant tissue characterization.
Why it matches plant phenotyping methodsMRIと空間化T2緩和解析を用いて、ジャガイモ塊茎の組織・内部欠陥を非破壊で分類・特性評価する方法が研究の中心であり、植物器官の状態を直接推定している。
abstractSpatialized multi-exponential T2 relaxometry was used to generate bi-exponential T2 maps, coupled with a classification scheme to identify the different T2 homogeneous zones within the tubers.
Reproduction assets foundThe paper's MRI T2 relaxometry data (potato tuber images and relaxation measurements) are openly deposited in a public repository (Recherche Data Gouv, DOI 10.57745/DR2GSS), as stated in the Data Availability Statement. The supplementary material contains only result figures, not datasets or code; no analysis code or模型Dataset · publicThe MRI data presented in this study are openly available at: https://doi.org/10.57745/DR2GSS (accessed on 29 January 2023).Open asset ↗10.57745/DR2GSSlines:388-401Code / dataset availability confirmedEurope PMC · checked 7 Sept 2026
Potato market value is heavily affected by tuber quality traits such as shape, color, and skinning. Despite this, potato breeders often rely on subjective scales that fail to precisely define phenotypes. Individual human evaluators and the environments in which ratings are taken can bias visual quality ratings. Collecting quality trait data using machine vision allows for precise measurements that will remain reliable between evaluators and breeding programs. Here we present TubAR (Tuber Analysis in R), an image analysis program designed to collect data for multiple tuber quality traits at low cost to breeders. To assess the efficacy of TubAR in comparison to visual scales, red-skinned potatoes were evaluated using both methods. Broad sense heritability was consistently higher for skinning, roundness, and length to width ratio using TubAR. TubAR collects essential data on fresh market potato breeding populations while maintaining efficiency by measuring multiple traits through one phenotyping protocol.
Why it matches plant phenotyping methods画像解析プログラムを開発し、ジャガイモ塊茎の形状・皮 traitsを定量化して目視評価と比較検証しているため、植物表現型取得法が中心です。
abstractHere we present TubAR (Tuber Analysis in R), an image analysis program designed to collect data for multiple tuber quality traits at low cost to breeders.
Reproduction assets foundThe paper's authors publicly released the TubAR R package (source code, instructions, vignette, and sample tuber image data) on GitHub, directly implementing the image-analysis phenotyping pipeline described in the paper.Code · publicTubAR is available at https://github.com/shannonlabumn/TubAR . Instructions, a vignette, and sample image data are available for download with the package. Source code can also be found in the github repository.Open asset ↗shannonlabumn/TubARlines:155-197Code / dataset availability confirmedCrossref · checked 14 Sept 2026
Published31 Jan 2023International Journal for Research in Applied Science and Engineering TechnologyCited by 1 · OpenAlex ↗
Abstract: Agriculture is an important part of our economy and has attracted our attention since the Middle Ages. India's population is mainly dependent on agriculture, accounting for 60~70%. Global crop losses from a variety of reasons, including weeds, disease, and arthropods, have increased at an alarming rate, from about 34.9% in 1965 to about 42.1% in the late 1990s. Bacteria and fungi can cause many diseases in plants. Many diseases such as Early blight and late blight are fungi that afflict plants. In our research, we provide CNN models and algorithms for detecting leaf diseases in crops. This study discusses the feasibility of CNNs and Transfer Learning for classifying plant diseases. This model is built using a basic CNN architecture to classify potato diseases. From the Plant Village database, 2,152 samples containing photos of leaves in three classes with images of healthy leaves were obtained and used for initial training to check the feasibility of plain CNN and then dataset with 54306 plant images was used to train the bigger plain CNN and Resnet152v2 and Inceptionv3 Architecture for detecting plant diseases using Transfer Learning. The photos were taken in an unstructured environment. The constructed model obtained a classification accuracy of 97.57%, clearly demonstrating the feasibility of utilizing CNNs to classify plant diseases.
Why it matches plant phenotyping methods植物葉の画像から病害状態をCNNで推定する手法が研究の中心であり、植物病害フェノタイピングに該当する。
abstractwe provide CNN models and algorithms for detecting leaf diseases in crops
Reproduction assets foundThe paper's plant-phenotyping inputs are entirely the public PlantVillage leaf-image dataset (2,152 potato leaf images and 54,306 images across 38 classes), which the authors state they downloaded; no author code, models, or supplementary deposits are mentioned.Dataset · publicThe dataset for the
experiment is downloaded from the Plant Village database which contains different plant leaf images and their labels.Open asset ↗pdf-layout-page:4 lines:1-50Code / dataset availability confirmedEurope PMC · checked 8 Sept 2026
Deep learning (DL) is an effective approach to identifying plant diseases. Among several DL-based techniques, transfer learning (TL) produces significant results in terms of improved accuracy. However, the usefulness of TL has not yet been explored using weights optimized from agricultural datasets. Furthermore, the detection of plant diseases in different organs of various vegetables has not yet been performed using a trained/optimized DL model. Moreover, the presence/detection of multiple diseases in vegetable organs has not yet been investigated. To address these research gaps, a new dataset named NZDLPlantDisease-v2 has been collected for New Zealand vegetables. The dataset includes 28 healthy and defective organs of beans, broccoli, cabbage, cauliflower, kumara, peas, potato, and tomato. This paper presents a transfer learning method that optimizes weights obtained through agricultural datasets for better outcomes in plant disease identification. First, several DL architectures are compared to obtain the best-suited model, and then, data augmentation techniques are applied. The Faster Region-based Convolutional Neural Network (RCNN) Inception ResNet-v2 attained the highest mean average precision (mAP) compared to the other DL models including different versions of Faster RCNN, Single-Shot Multibox Detector (SSD), Region-based Fully Convolutional Networks (RFCN), RetinaNet, and EfficientDet. Next, weight optimization is performed on datasets including PlantVillage, NZDLPlantDisease-v1, and DeepWeeds using image resizers, interpolators, initializers, batch normalization, and DL optimizers. Updated/optimized weights are then used to retrain the Faster RCNN Inception ResNet-v2 model on the proposed dataset. Finally, the results are compared with the model trained/optimized using a large dataset, such as Common Objects in Context (COCO). The final mAP improves by 9.25% and is found to be 91.33%. Moreover, the robustness of the methodology is demonstrated by testing the final model on an external dataset and using the stratified k-fold cross-validation method.
Why it matches plant phenotyping methods植物病害の症状を画像から検出する深層学習手法を開発し、データセット、モデル比較、外部検証、交差検証まで行っており、植物状態の取得・推定が中心である。
abstractThis paper presents a transfer learning method that optimizes weights obtained through agricultural datasets for better outcomes in plant disease identification.
Reproduction assets foundThe paper's NZDLPlantDisease-v2 plant disease image dataset is explicitly stated as publicly available on the authors' GitHub repository.Dataset · publicThe dataset presented in this study is made publicly available in a GitHub repository: https://github.com/kmarif/NZDLPlantDisease-v2 .Open asset ↗kmarif/NZDLPlantDisease-v2 · NZDLPlantDisease-v2lines:981-1043Code / dataset availability confirmedOpenAlex · Crossref · checked 15 Sept 2026
With the ongoing cost decrease of genotyping and sequencing technologies, accurate and fast phenotyping remains the bottleneck in the utilizing of plant genetic resources for breeding and breeding research. Although cost-efficient high-throughput phenotyping platforms are emerging for specific traits and/or species, manual phenotyping is still widely used and is a time- and money-consuming step. Approaches that improve data recording, processing or handling are pivotal steps towards the efficient use of genetic resources and are demanded by the research community. Therefore, we developed PhenoApp, an open-source Android app for tablets and smartphones to facilitate the digital recording of phenotypical data in the field and in greenhouses. It is a versatile tool that offers the possibility to fully customize the descriptors/scales for any possible scenario, also in accordance with international information standards such as MIAPPE (Minimum Information About a Plant Phenotyping Experiment) and FAIR (Findable, Accessible, Interoperable, and Reusable) data principles. Furthermore, PhenoApp enables the use of pre-integrated ready-to-use BBCH (Biologische Bundesanstalt für Land- und Forstwirtschaft, Bundessortenamt und CHemische Industrie) scales for apple, cereals, grapevine, maize, potato, rapeseed and rice. Additional BBCH scales can easily be added. The simple and adaptable structure of input and output files enables an easy data handling by either spreadsheet software or even the integration in the workflow of laboratory information management systems (LIMS). PhenoApp is therefore a decisive contribution to increase efficiency of digital data acquisition in genebank management but also contributes to breeding and breeding research by accelerating the labour intensive and time-consuming acquisition of phenotyping data.
Why it matches plant phenotyping methods植物表現型データのデジタル記録・取得を目的とするオープンソースアプリの開発であり、表現型測定ワークフローが中心的です。
abstractTherefore, we developed PhenoApp, an open-source Android app for tablets and smartphones to facilitate the digital recording of phenotypical data in the field and in greenhouses.
Reproduction assets foundThe paper describes PhenoApp, an open-source Android phenotyping app. Authors provide the app's source code (Gitea, archived on Zenodo) and underlying example input/output phenotype data files on Zenodo under CC0. The SHAPE II project website is a project page, not a paper-specific data deposit, and is excluded.Code · publice ‘in’ folder of the app main directory and no additional source data is required).
-
Output_example.xls (sample output file created by PhenoApp).
Data are available under the terms of the
Creative Commons Zero “No rights reserved” data waiver (CC0 1.0 Public domain dedication).
Software availability
Source code available from:
https://gitea.julius-kuehn.de/JKI/pheno-app
Archived source code at time of publication:
https://doi.org/10.5281/zenodo.5525779
36
License:
Apache-2.0
Acknowledgements
We are grateful to Moritz Cappel, Teresa Claus and Claudia Vogel for ongoing testing, recommendations and bug report of PhenoApp during development.
Funding Statement
This work was supported by grants fOpen asset ↗gitea.julius-kuehn.de · JKI/pheno-applines:333-433Code · publicput_example.xls (sample output file created by PhenoApp).
Data are available under the terms of the
Creative Commons Zero “No rights reserved” data waiver (CC0 1.0 Public domain dedication).
Software availability
Source code available from:
https://gitea.julius-kuehn.de/JKI/pheno-app
Archived source code at time of publication:
https://doi.org/10.5281/zenodo.5525779
36
License:
Apache-2.0
Acknowledgements
We are grateful to Moritz Cappel, Teresa Claus and Claudia Vogel for ongoing testing, recommendations and bug report of PhenoApp during development.
Funding Statement
This work was supported by grants from the German Federal Ministry of Education and Research to FS (SelWineQ, FKZ 031B0889Open asset ↗Zenodo · 10.5281/zenodo.5525779lines:333-433Code / dataset availability confirmedCrossref · checked 14 Sept 2026
Various plant diseases are major threats to agriculture. For timely control of different plant diseases in effective manner, automated identification of diseases are highly beneficial. So far, different techniques have been used to identify the diseases in plants. Deep learning is among the most widely used techniques in recent times due to its impressive results. In this work, we have proposed two methods namely shallow VGG with RF and shallow VGG with Xgboost to identify the diseases. The proposed model is compared with other hand-crafted and deep learning-based approaches. The experiments are carried on three different plants namely corn, potato, and tomato. The considered diseases in corns are Blight, Common rust, and Gray leaf spot, diseases in potatoes are early blight and late blight, and tomato diseases are bacterial spot, early blight, and late blight. The result shows that our implemented shallow VGG with Xgboost model outperforms different deep learning models in terms of accuracy, precision, recall, f1-score, and specificity. Shallow Visual Geometric Group (VGG) with Xgboost gives the highest accuracy rate of 94.47% in corn, 98.74% in potato, and 93.91% in the tomato dataset. The models are also tested with field images of potato, corn, and tomato. Even in field image the average accuracy obtained using shallow VGG with Xgboost are 94.22%, 97.36%, and 93.14%, respectively.
Why it matches plant phenotyping methods植物画像から病害状態を分類するCNN手法の開発・比較・検証が研究の中心であり、植物病害という表現型状態を直接推定しているため採用。
abstractIn this work, we have proposed two methods namely shallow VGG with RF and shallow VGG with Xgboost to identify the diseases.
Reproduction assets foundThe paper's corn disease classification experiments directly use the public Kaggle 'Corn or Maize Plant Leaf Diseases' dataset (4188 images), cited with an explicit public URL. The PlantVillage subset and authors' field images have no public deposit (data availability is on-request only), and no author analysis code orDataset · public39. Corn or Maize Plant Leaf Diseases. Available online: https://www.kaggle.com/smaranjitghose/corn-or-maize-leaf-disease-dataset (accessed on 15 January 2021).
40. Nachtigall, L.G.; Araujo, R.M.; Nachtigall, G.R. Classification of apple tree disorders using convolutional neural networks.
In Proceedings of the 2016 IEEE 28th International Conference on Tools with Artificial Intelligence (ICTAI), San Jose, CA, USA,
6–8 November 2016; pp. 472–476.
41. Wang,Open asset ↗Kaggle · smaranjitghose/corn-or-maize-leaf-disease-datasetpdf-raw-page:19 lines:53-58Code / dataset availability confirmedCrossref · checked 9 Sept 2026
Abstract Background Drought is a major consequence of global heating that has negative impacts on agriculture. Potato is a drought-sensitive crop; tuber growth and dry matter content may both be impacted. Moreover, water deficit can induce physiological disorders such as glassy tubers and internal rust spots. The response of potato plants to drought is complex and can be affected by cultivar type, climatic and soil conditions, and the point at which water stress occurs during growth. The characterization of adaptive responses in plants presents a major phenotyping challenge. There is therefore a demand for the development of non-invasive analytical techniques to improve phenotyping. Results This project aimed to take advantage of innovative approaches in MRI, phenotyping and molecular biology to evaluate the effects of water stress on potato plants during growth. Plants were cultivated in pots under different water conditions. A control group of plants were cultivated under optimal water uptake conditions. Other groups were cultivated under mild and severe water deficiency conditions (40 and 20% of field capacity, respectively) applied at different tuber growth phases (initiation, filling). Water stress was evaluated by monitoring soil water potential. Two fully-equipped imaging cabinets were set up to characterize plant morphology using high definition color cameras (top and side views) and to measure plant stress using RGB cameras. The response of potato plants to water stress depended on the intensity and duration of the stress. Three-dimensional morphological images of the underground organs of potato plants in pots were recorded using a 1.5 T MRI scanner. A significant difference in growth kinetics was observed at the early growth stages between the control and stressed plants. Quantitative PCR analysis was carried out at molecular level on the expression patterns of selected drought-responsive genes. Variations in stress levels were seen to modulate ABA and drought-responsive ABA-dependent and ABA-independent genes. Conclusions This methodology, when applied to the phenotyping of potato under water deficit conditions, provides a quantitative analysis of leaves and tubers properties at microstructural and molecular levels. The approaches thus developed could therefore be effective in the multi-scale characterization of plant response to water stress, from organ development to gene expression.
Why it matches plant phenotyping methodsジャガイモの水ストレス表現型を取得するための非侵襲的イメージング・生理計測手法と装置構成が研究の中心であり、単なる生物学的測定ではない。
abstractThere is therefore a demand for the development of non-invasive analytical techniques to improve phenotyping.
Reproduction assets foundThe paper's MRI phenotyping data (3D images of potato tubers in pots under water deficit) are openly deposited in Data INRAE with an explicit DOI, as stated in the Availability of data and materials section. No author analysis code or trained models are reported.Dataset · publicThe MRI data presented in this study are openly available in Data INRAE ( https://data.inrae.fr/ ) repository at: https://data.inrae.fr/dataset.xhtml?persistentId=doi:10.15454/SFAXAA ).Open asset ↗Data INRAE · doi:10.15454/SFAXAAlines:160-172Code / dataset availability confirmedCrossref · Europe PMC · checked 9 Sept 2026
The control of plant leaf diseases is crucial as it affects the quality and production of plant species with an effect on the economy of any country. Automated identification and classification of plant leaf diseases is, therefore, essential for the reduction of economic losses and the conservation of specific species. Various Machine Learning (ML) models have previously been proposed to detect and identify plant leaf disease; however, they lack usability due to hardware sophistication, limited scalability and realistic use inefficiency. By implementing automatic detection and classification of leaf diseases in fruit trees (apple, grape, peach and strawberry) and vegetable plants (potato and tomato) through scalable transfer learning on Amazon Web Services (AWS) SageMaker and importing it into AWS DeepLens for real-time functional usability, our proposed DeepLens Classification and Detection Model (DCDM) addresses such limitations. Scalability and ubiquitous access to our approach is provided by cloud integration. Our experiments on an extensive image data set of healthy and unhealthy fruit trees and vegetable plant leaves showed 98.78% accuracy with a real-time diagnosis of diseases of plant leaves. To train DCDM deep learning model, we used forty thousand images and then evaluated it on ten thousand images. It takes an average of 0.349s to test an image for disease diagnosis and classification using AWS DeepLens, providing the consumer with disease information in less than a second.
Why it matches plant phenotyping methods植物葉の病害状態を画像から自動推定する深層学習・クラウド実装を開発・評価しており、植物フェノタイピング手法が中心です。
abstractAutomated identification and classification of plant leaf diseases is, therefore, essential
Reproduction assets foundThe paper's Data Availability statement explicitly links a public Kaggle plant-disease image dataset used for training/testing and an authors' GitHub code repository. The TensorFlow plant_village catalog URL is a generic mirror of the same public dataset rather than a paper-specific deposit.Dataset · publicData Availability: Dataset is available from the below link: https://www.kaggle.com/emmarex/plantdiseaseOpen asset ↗kaggle · emmarex/plantdiseaselines:123-130Code · publicGithub Code Repo Link: https://github.com/umairnawazz/Plant-Disease-DetectionOpen asset ↗github · umairnawazz/Plant-Disease-Detectionlines:123-130Code / dataset availability confirmedCrossref · Europe PMC · checked 9 Sept 2026
Abstract We present a new large-scale three-fold annotated microscopy image dataset, aiming to advance the plant cell biology research by exploring different cell microstructures including cell size and shape, cell wall thickness, intercellular space, etc. in deep learning (DL) framework. This dataset includes 9,811 unstained and 6,127 stained (safranin-o, toluidine blue-o, and lugol’s-iodine) images with three-fold annotation including physical, morphological, and tissue grading based on weight, different section area, and tissue zone respectively. In addition, we prepared ground truth segmentation labels for three different tuber weights. We have validated the pertinence of annotations by performing multi-label cell classification, employing convolutional neural network (CNN), VGG16, for unstained and stained images. The accuracy has been achieved up to 0.94, while, F2-score reaches to 0.92. Furthermore, the ground truth labels have been verified by semantic segmentation algorithm using UNet architecture which presents the mean intersection of union up to 0.70. Hence, the overall results show that the data are very much efficient and could enrich the domain of microscopy plant cell analysis for DL-framework.
Why it matches plant phenotyping methodsジャガイモ塊茎の細胞形態・組織特性を対象とする大規模画像データセットを構築し、分類・セグメンテーションで検証しており、植物フェノタイピング用データ資源が中心である。
titleA large-scale optical microscopy image dataset of potato tuber for deep learning based plant cell assessment
Reproduction assets foundThe paper's potato tuber microscopy image dataset (raw stained/unstained images plus ground truth segmentation labels) is publicly deposited on figshare by the authors.Dataset · publicThis dataset is publicly available on figshare47 (https://doi.org/10.6084/m9.figshare.c.4955669) which can be
downloaded as a zip file.Open asset ↗figshare · 10.6084/m9.figshare.c.4955669pdf-page:5 lines:1-35Code / dataset availability confirmedEurope PMC · Crossref · checked 9 Sept 2026
Rapeseed is an important oil crop in China. Timely estimation of rapeseed stand count at early growth stages provides useful information for precision fertilization, irrigation, and yield prediction. Based on the nature of rapeseed, the number of tillering leaves is strongly related to its growth stages. However, no field study has been reported on estimating rapeseed stand count by the number of leaves recognized with convolutional neural networks (CNNs) in unmanned aerial vehicle (UAV) imagery. The objectives of this study were to provide a case for rapeseed stand counting with reference to the existing knowledge of the number of leaves per plant and to determine the optimal timing for counting after rapeseed emergence at leaf development stages with one to seven leaves. A CNN model was developed to recognize leaves in UAV-based imagery, and rapeseed stand count was estimated with the number of recognized leaves. The performance of leaf detection was compared using sample sizes of 16, 24, 32, 40, and 48 pixels. Leaf overcounting occurred when a leaf was much bigger than others as this bigger leaf was recognized as several smaller leaves. Results showed CNN-based leaf count achieved the best performance at the four- to six-leaf stage with F-scores greater than 90% after calibration with overcounting rate. On average, 806 out of 812 plants were correctly estimated on 53 days after planting (DAP) at the four- to six-leaf stage, which was considered as the optimal observation timing. For the 32-pixel patch size, root mean square error (RMSE) was 9 plants with relative RMSE (rRMSE) of 2.22% on 53 DAP, while the mean RMSE was 12 with mean rRMSE of 2.89% for all patch sizes. A sample size of 32 pixels was suggested to be optimal accounting for balancing performance and efficiency. The results of this study confirmed that it was feasible to estimate rapeseed stand count in field automatically, rapidly, and accurately. This study provided a special perspective in phenotyping and cultivation management for estimating seedling count for crops that have recognizable leaves at their early growth stage, such as soybean and potato.
Why it matches plant phenotyping methodsUAV画像とCNNを用いて rapeseed の葉を認識し、植物体数（stand count）を自動推定する手法の開発・性能評価が研究の中心であるため、植物フェノタイピング方法論に該当します。
abstractA CNN model was developed to recognize leaves in UAV-based imagery, and rapeseed stand count was estimated with the number of recognized leaves.
Reproduction assets foundThe paper's data availability statement explicitly deposits the 'Rapeseed_seedling_counting' data (supporting the UAV imagery-based stand count findings) in a public GitHub repository with an authors' URL, qualifying as a paper-specific public asset.Dataset · publicThe “Rapeseed_seedling_counting” data that support the findings of this study are available in “LARSC-Lab/Rapeseed_seedling_counting” in GitHub, which can be found at https://github.com/LARSC-Lab/Rapeseed_seedling_counting .Open asset ↗LARSC-Lab/Rapeseed_seedling_countinglines:590-664Code / dataset availability confirmedCrossref · checked 10 Sept 2026
Abstract. Ground reference data are a prerequisite for the calibration, update, and validation of retrieval models facilitating the monitoring of land parameters based on Earth Observation data. Here, we describe the acquisition of a comprehensive ground reference database which was created to test and validate the recently developed Earth Observation Land Data Assimilation System (EO-LDAS) and products derived from remote sensing observations in the visible and infrared range. In situ data were collected for seven crop types (winter barley, winter wheat, spring wheat, durum, winter rape, potato, and sugar beet) cultivated on the agricultural Gebesee test site, central Germany, in 2013 and 2014. The database contains information on hyperspectral surface reflectance factors, the evolution of biophysical and biochemical plant parameters, phenology, surface conditions, atmospheric states, and a set of ground control points. Ground reference data were gathered at an approximately weekly resolution and on different spatial scales to investigate variations within and between acreages. In situ data collected less than 1 day apart from satellite acquisitions (RapidEye, SPOT 5, Landsat-7 and -8) with a cloud coverage ≤ 25 % are available for 10 and 15 days in 2013 and 2014, respectively. The measurements show that the investigated growing seasons were characterized by distinct meteorological conditions causing interannual variations in the parameter evolution. Here, the experimental design of the field campaigns, and methods employed in the determination of all parameters, are described in detail. Insights into the database are provided and potential fields of application are discussed. The data will contribute to a further development of crop monitoring methods based on remote sensing techniques. The database is freely available at PANGAEA (https://doi.org/10.1594/PANGAEA.874251).
Why it matches plant phenotyping methods複数作物の植物パラメータ、表現型、ハイパースペクトル反射を体系的に取得した地上基準データベースであり、取得設計と各パラメータの測定法を詳細に記述して、リモートセンシングモデルの校正・検証に用いる点が中心的です。
abstractwe describe the acquisition of a comprehensive ground reference database which was created to test and validate the recently developed Earth Observation Land Data Assimilation System (EO-LDAS) and products derived from remote sensing observations
Reproduction assets foundThis is a data descriptor paper whose plant-phenotyping measurements (biophysical/biochemical plant parameters, phenology, hyperspectral reflectance, FVC/PSM, soil moisture, photos, survey data) are explicitly deposited as public PANGAEA datasets with DOIs listed in the text. Multiple paper-specific public assets are直接Dataset · publicThe database is freely available at PANGAEA
(https://doi.org/10.1594/PANGAEA.874251).Open asset ↗PANGAEA · 10.1594/PANGAEA.874251pdf-page:1 lines:1-54Code / dataset availability confirmedCrossref · checked 13 Sept 2026
Abstract. Ground reference data are a prerequisite for the calibration, update and validation of retrieval models facilitating the monitoring of land parameters based on Earth Observation data. Here, we describe the acquisition of a comprehensive ground reference database which was elaborated to test and validate the recently developed Earth Observation Land Data Assimilation System (EO-LDAS). In situ data was collected for seven crop types (winter barley, winter wheat, spring wheat, durum, winter rape, potato and sugar beet) cultivated on the agricultural Gebesee test site, central Germany, in 2013 and 2014. The database contains information on hyperspectral surface reflectance, the evolution of biophysical and biochemical plant parameters, phenology, surface conditions, atmospheric states, and a set of ground control points. Ground reference data was gathered with an approximately weekly resolution and on different spatial scales to investigate variations within and between acreages. In situ data collected less than 1 day apart from satellite acquisitions (RapidEye, SPOT5, Landsat-7 and -8) with a cloud coverage ≤ 25 % is available for 10 and 16 days in 2013 and 2014, respectively. The measurements show that the investigated growing seasons were characterized by distinct meteorological conditions causing interannual variations in the parameter evolution. In the article, the experimental design of the field campaigns, and methods employed in the determination of all parameters are described in detail. Insights into the database are provided and potential fields of application are discussed. We hope these data will contribute to a further development of crop monitoring methods based on remote sensing techniques. The database is freely available at PANGAEA (doi:10.1594/PANGAEA.874251).
Why it matches plant phenotyping methods作物の生育・生物物理／生化学的パラメータと反射スペクトル等を反復取得する地上観測データベースを構築し、衛星リモートセンシング検索モデルの校正・検証に用いる方法とデータが中心であるため、植物フェノタイピングのデータセット／測定基盤として含める。
abstractHere, we describe the acquisition of a comprehensive ground reference database which was elaborated to test and validate the recently developed Earth Observation Land Data Assimilation System (EO-LDAS).
Reproduction assets foundThis is a data descriptor paper whose entire contribution is a public ground-reference plant-phenotyping database (biophysical/biochemical plant parameters, phenology, hyperspectral reflectance, FVC/PSM imagery-derived traits) hosted on PANGAEA. The article text explicitly provides public PANGAEA DOIs for the main 2013Dataset · publicThe database is freely available at PANGAEA
(https://doi.org/10.1594/PANGAEA.874251).Open asset ↗PANGAEA · 10.1594/PANGAEA.874251pdf-page:1 lines:1-54