← PhenoCode Atlas

Method

From search to reusable evidence.

Automated discovery and analysis build an unverified research index. Curator approval is still required before a resource enters the Catalog.

01Scholarly APIs

Literature search

No AI model
Input
OpenAlex · Crossref · Europe PMC · arXiv · bioRxiv
Process
Collect metadata, identifiers, titles, and abstracts, then merge duplicate records.
Output
Unique paper records
02OpenAI API

Relevance screening

GPT-5.6 Luna · low reasoning
Input
Title + abstract
Process
Identify papers that contribute a plant phenotyping method, application, benchmark, or methods review.
Output
Relevant · Needs evidence · Out of scope
03Local Minisforum

Semantic keywords

Qwen3.8 27B
Input
Title + abstract
Process
Assign terms from the controlled taxonomy for crop, trait, organ, measurement method, task, and environment.
Output
Canonical research facets
04Local Minisforum

Vector embedding

Qwen3-Embedding-8B · 1,024 dimensions
Input
Title + abstract
Process
Create a normalized semantic vector for related-paper retrieval and the literature map.
Output
Cloudflare Vectorize index
05Local DGX Spark

Research asset audit

GLM-5.3-Flash EXL3
Input
Available full text or extracted PDF text
Process
Find paper-specific code, datasets, model weights, and supplements with their supporting passage and source URL.
Output
Evidence-backed asset status